Wall clock time and date at job start Wed Apr 1 2020 06:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46751 * 2 1 4 4 H 1.09006 * 109.47001 * 305.00013 * 3 2 1 5 5 C 1.52996 * 109.47337 * 185.00015 * 3 2 1 6 6 O 1.42897 * 109.47666 * 64.99782 * 3 2 1 7 7 C 1.35689 * 117.00594 * 210.00248 * 6 3 2 8 8 C 1.38892 * 119.62530 * 180.25423 * 7 6 3 9 9 C 1.39571 * 118.94223 * 180.26682 * 8 7 6 10 10 C 1.48164 * 120.88852 * 179.75669 * 9 8 7 11 11 O 1.21517 * 120.00260 * 359.72132 * 10 9 8 12 12 N 1.34782 * 120.00217 * 179.72665 * 10 9 8 13 13 C 1.46494 * 120.00107 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47037 * 175.90924 * 13 12 10 15 15 N 1.46502 * 112.85196 * 292.02808 * 14 13 12 16 16 C 1.36939 * 119.99904 * 294.78610 * 15 14 13 17 17 H 1.07996 * 119.99666 * 353.80236 * 16 15 14 18 18 C 1.38803 * 119.99801 * 173.80441 * 16 15 14 19 19 N 1.31623 * 120.00119 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00412 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47093 * 90.00012 * 20 18 16 22 22 H 1.48492 * 109.47412 * 210.00450 * 20 18 16 23 23 H 1.48511 * 109.46813 * 330.00322 * 20 18 16 24 24 C 1.53782 * 113.61339 * 160.71829 * 14 13 12 25 25 C 1.53782 * 87.08184 * 220.02221 * 24 14 13 26 26 C 1.53782 * 87.08081 * 25.43284 * 25 24 14 27 27 C 1.39963 * 118.22062 * 359.48462 * 9 8 7 28 28 C 1.37974 * 119.13107 * 0.27609 * 27 9 8 29 29 N 1.31910 * 120.98052 * 359.97349 * 28 27 9 30 30 H 1.09003 * 109.46701 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47220 * 299.99830 * 1 2 3 32 32 H 1.08999 * 109.47248 * 60.00283 * 1 2 3 33 33 H 1.08994 * 109.46983 * 239.99732 * 2 1 3 34 34 H 1.08999 * 109.47248 * 119.99717 * 2 1 3 35 35 H 1.09010 * 109.46917 * 59.99494 * 5 3 2 36 36 H 1.08995 * 109.47634 * 179.97438 * 5 3 2 37 37 H 1.08998 * 109.47183 * 300.00275 * 5 3 2 38 38 H 1.07995 * 120.52972 * 0.05261 * 8 7 6 39 39 H 0.96997 * 119.99709 * 359.97438 * 12 10 9 40 40 H 1.08994 * 109.47239 * 295.90832 * 13 12 10 41 41 H 1.08997 * 109.46958 * 55.91283 * 13 12 10 42 42 H 0.97003 * 119.99621 * 114.77863 * 15 14 13 43 43 H 0.96999 * 120.00221 * 179.97438 * 19 18 16 44 44 H 1.08993 * 113.61574 * 334.56981 * 24 14 13 45 45 H 1.09003 * 113.61314 * 105.47495 * 24 14 13 46 46 H 1.08997 * 113.61164 * 270.88668 * 25 24 14 47 47 H 1.08996 * 113.61645 * 139.98368 * 25 24 14 48 48 H 1.09000 * 113.61619 * 220.01967 * 26 25 24 49 49 H 1.08997 * 113.61344 * 89.12018 * 26 25 24 50 50 H 1.08004 * 120.43626 * 180.24628 * 27 9 8 51 51 H 1.08006 * 119.51016 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5647 1.4445 -0.1257 6 8 1.6619 2.0815 1.2210 7 6 1.4504 3.4210 1.1755 8 6 1.0859 4.0982 2.3322 9 6 0.8665 5.4750 2.2680 10 6 0.4709 6.2392 3.4742 11 8 0.3286 5.6668 4.5366 12 7 0.2689 7.5693 3.3931 13 6 -0.1227 8.3248 4.5855 14 6 -0.1868 9.8155 4.2466 15 7 1.1297 10.3911 3.9607 16 6 2.0763 10.4590 4.9479 17 1 1.8216 10.1817 5.9602 18 6 3.3630 10.8841 4.6476 19 7 4.2727 10.9498 5.5965 20 14 3.8037 11.3631 2.8966 21 1 3.5460 12.8123 2.7000 22 1 5.2403 11.0781 2.6521 23 1 2.9748 10.5794 1.9456 24 6 -1.0178 10.6389 5.2447 25 6 -1.5610 11.4139 4.0326 26 6 -1.2527 10.1624 3.1937 27 6 1.0356 6.1154 1.0350 28 6 1.4045 5.3685 -0.0648 29 7 1.5985 4.0673 0.0322 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.8531 0.9571 -1.0572 36 1 3.9280 2.4721 -0.1262 37 1 3.9994 0.9055 0.7160 38 1 0.9708 3.5672 3.2655 39 1 0.3828 8.0263 2.5451 40 1 -1.1019 7.9868 4.9244 41 1 0.6110 8.1630 5.3752 42 1 1.3308 10.7241 3.0721 43 1 5.1720 11.2466 5.3865 44 1 -1.7770 10.0561 5.7662 45 1 -0.4141 11.2480 5.9175 46 1 -0.9575 12.2803 3.7622 47 1 -2.6245 11.6424 4.1013 48 1 -0.8386 10.3868 2.2107 49 1 -2.0761 9.4494 3.1545 50 1 0.8790 7.1803 0.9456 51 1 1.5371 5.8565 -1.0192 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273180925.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:42:11 Heat of formation + Delta-G solvation = -8.390203 kcal Electronic energy + Delta-G solvation = -30634.873691 eV Core-core repulsion = 26535.663085 eV Total energy + Delta-G solvation = -4099.210606 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.99385 -39.72209 -38.83017 -38.03839 -34.55245 -34.14505 -33.35258 -32.69652 -30.75468 -30.57233 -29.96869 -27.74474 -25.43758 -24.99633 -24.17556 -23.46029 -23.37697 -21.94954 -21.31734 -20.29844 -18.96838 -18.22713 -17.70415 -17.35401 -16.60412 -15.96277 -15.80890 -15.57468 -15.22367 -14.91640 -14.64030 -14.53285 -14.30100 -14.22181 -14.13383 -13.93228 -13.58732 -13.39837 -13.08702 -12.84910 -12.74521 -12.41540 -12.18245 -12.08729 -12.03280 -11.94921 -11.52255 -11.42398 -11.25048 -11.03880 -10.99251 -10.91140 -10.51785 -10.33821 -10.24356 -10.11272 -10.00554 -9.75372 -9.63330 -9.56959 -8.96727 -8.69860 -8.67281 -7.39500 -5.84222 -3.22579 0.63480 0.99607 2.71551 2.98571 3.27433 3.30315 3.38135 3.38947 3.77134 4.07258 4.42057 4.50158 4.57292 4.64534 4.77555 4.82769 4.87476 4.92562 4.95619 5.02168 5.08677 5.12641 5.23068 5.26328 5.28956 5.36212 5.44092 5.54157 5.60120 5.60979 5.63048 5.69508 5.76696 5.88198 5.88777 5.94807 5.97446 5.98319 6.05507 6.15333 6.16180 6.19409 6.44384 6.58393 6.73684 6.77454 6.89489 7.08947 7.61934 7.72486 7.91939 8.33844 8.37673 9.10667 9.82146 9.99882 11.33534 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.002600 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.336783 B =10765.890815 C =11770.050669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C 0.085 3.915 4 H 0.090 0.910 5 C -0.170 4.170 6 O -0.297 6.297 7 C 0.321 3.679 8 C -0.135 4.135 9 C -0.044 4.044 10 C 0.552 3.448 11 O -0.533 6.533 12 N -0.696 5.696 13 C 0.118 3.882 14 C 0.178 3.822 15 N -0.724 5.724 16 C -0.243 4.243 17 H 0.092 0.908 18 C 0.010 3.990 19 N -0.928 5.928 20 Si 0.882 3.118 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.277 1.277 24 C -0.147 4.147 25 C -0.130 4.130 26 C -0.148 4.148 27 C -0.182 4.182 28 C 0.137 3.863 29 N -0.530 5.530 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.153 0.847 39 H 0.398 0.602 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.363 0.637 43 H 0.260 0.740 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.057 0.943 48 H 0.063 0.937 49 H 0.082 0.918 50 H 0.141 0.859 51 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.982 -14.929 -14.776 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C 0.029 3.971 4 H 0.108 0.892 5 C -0.228 4.228 6 O -0.204 6.204 7 C 0.142 3.858 8 C -0.157 4.157 9 C -0.054 4.054 10 C 0.337 3.663 11 O -0.411 6.411 12 N -0.345 5.345 13 C -0.007 4.007 14 C 0.085 3.915 15 N -0.366 5.366 16 C -0.372 4.372 17 H 0.110 0.890 18 C -0.187 4.187 19 N -0.575 5.575 20 Si 0.712 3.288 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.187 4.187 25 C -0.167 4.167 26 C -0.186 4.186 27 C -0.203 4.203 28 C -0.018 4.018 29 N -0.254 5.254 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.171 0.829 39 H 0.233 0.767 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.196 0.804 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.100 0.900 50 H 0.159 0.841 51 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.697 -15.994 -14.280 23.532 hybrid contribution 0.561 1.222 -1.106 1.741 sum -9.136 -14.772 -15.385 23.203 Atomic orbital electron populations 1.21765 0.95207 1.01803 1.02360 1.21691 0.96801 0.94280 1.03131 1.22423 0.95274 0.93069 0.86334 0.89204 1.22223 0.95019 1.03065 1.02446 1.86308 1.82366 1.15820 1.35932 1.19612 0.92032 0.84778 0.89387 1.21124 1.02680 0.93178 0.98720 1.20252 0.97544 0.93432 0.94200 1.18023 0.78189 0.82530 0.87522 1.90772 1.51432 1.69548 1.29308 1.45670 1.68350 1.06741 1.13758 1.21955 0.99593 0.91812 0.87355 1.20759 0.85904 0.89664 0.95132 1.42397 1.10178 1.72874 1.11161 1.18923 0.89114 1.38484 0.90719 0.88995 1.24676 0.95774 1.01475 0.96750 1.69693 1.03572 1.52867 1.31378 0.86612 0.77751 0.78390 0.86049 1.21143 1.21801 1.20342 1.23273 0.98988 0.99257 0.97162 1.22652 0.99746 0.97041 0.97278 1.23214 0.98850 0.98632 0.97916 1.22189 1.03465 1.01741 0.92883 1.22330 0.93106 0.87713 0.98680 1.67117 1.19881 1.11764 1.26636 0.92463 0.92067 0.92808 0.90061 0.90868 0.91144 0.91851 0.91896 0.82905 0.76713 0.92210 0.90172 0.80370 0.92968 0.90929 0.90171 0.90127 0.92411 0.91874 0.89977 0.84083 0.81824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.81 37.16 0.36 -0.81 16 2 C -0.12 -0.91 5.64 -26.73 -0.15 -1.06 16 3 C 0.09 0.82 2.49 -26.73 -0.07 0.75 16 4 H 0.09 0.90 6.98 -51.93 -0.36 0.53 16 5 C -0.17 -1.50 9.53 37.16 0.35 -1.15 16 6 O -0.30 -3.64 9.30 -18.77 -0.17 -3.81 16 7 C 0.32 4.23 7.45 -17.16 -0.13 4.10 16 8 C -0.14 -1.92 9.61 -38.84 -0.37 -2.30 16 9 C -0.04 -0.62 5.91 -104.68 -0.62 -1.24 16 10 C 0.55 9.36 7.80 -12.18 -0.09 9.27 16 11 O -0.53 -10.79 16.44 5.35 0.09 -10.70 16 12 N -0.70 -11.03 5.40 -61.15 -0.33 -11.36 16 13 C 0.12 2.05 5.08 -4.04 -0.02 2.03 16 14 C 0.18 3.01 0.82 -131.00 -0.11 2.90 16 15 N -0.72 -15.18 4.98 -46.48 -0.23 -15.41 16 16 C -0.24 -6.35 9.53 -15.06 -0.14 -6.49 16 17 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 18 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 19 N -0.93 -28.38 13.97 55.49 0.78 -27.60 16 20 Si 0.88 20.96 27.68 -169.99 -4.70 16.25 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 23 H -0.28 -6.00 6.62 56.52 0.37 -5.63 16 24 C -0.15 -2.33 7.28 -25.92 -0.19 -2.52 16 25 C -0.13 -1.79 7.99 -25.92 -0.21 -2.00 16 26 C -0.15 -1.97 6.98 -25.92 -0.18 -2.15 16 27 C -0.18 -2.11 9.61 -39.03 -0.38 -2.49 16 28 C 0.14 1.46 11.17 -17.61 -0.20 1.26 16 29 N -0.53 -6.45 8.61 -13.38 -0.12 -6.57 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.56 7.82 -51.93 -0.41 0.15 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.15 2.21 7.74 -52.49 -0.41 1.80 16 39 H 0.40 5.51 6.37 -40.82 -0.26 5.25 16 40 H 0.06 0.95 8.01 -51.93 -0.42 0.53 16 41 H 0.08 1.69 7.80 -51.93 -0.41 1.29 16 42 H 0.36 7.45 5.80 -40.82 -0.24 7.22 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.07 1.01 8.01 -51.93 -0.42 0.60 16 45 H 0.08 1.48 7.87 -51.93 -0.41 1.07 16 46 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 49 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 50 H 0.14 1.36 6.53 -52.48 -0.34 1.02 16 51 H 0.16 1.20 8.06 -52.48 -0.42 0.77 16 LS Contribution 416.23 15.07 6.27 6.27 Total: -1.00 -32.28 416.23 -8.96 -41.24 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -8.31 Total: 13.42 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -2.23 Total: -1.74 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: 0.10 Total: -60.94 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.09 Total: -14.51 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.70 Total: 16.25 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.28 -8.96 -41.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273180925.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.851 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds