Wall clock time and date at job start Wed Apr 1 2020 06:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46751 * 2 1 4 4 H 1.09006 * 109.47001 * 305.00013 * 3 2 1 5 5 C 1.52996 * 109.47337 * 185.00015 * 3 2 1 6 6 O 1.42897 * 109.47666 * 64.99782 * 3 2 1 7 7 C 1.35689 * 117.00594 * 210.00248 * 6 3 2 8 8 C 1.38892 * 119.62530 * 180.25423 * 7 6 3 9 9 C 1.39571 * 118.94223 * 180.26682 * 8 7 6 10 10 C 1.48164 * 120.88852 * 179.75669 * 9 8 7 11 11 O 1.21517 * 120.00260 * 359.72132 * 10 9 8 12 12 N 1.34782 * 120.00217 * 179.72665 * 10 9 8 13 13 C 1.46494 * 120.00107 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47037 * 175.90924 * 13 12 10 15 15 N 1.46502 * 112.85196 * 292.02808 * 14 13 12 16 16 C 1.36939 * 119.99904 * 294.78610 * 15 14 13 17 17 H 1.07996 * 119.99666 * 353.80236 * 16 15 14 18 18 C 1.38803 * 119.99801 * 173.80441 * 16 15 14 19 19 N 1.31623 * 120.00119 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00412 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47093 * 90.00012 * 20 18 16 22 22 H 1.48492 * 109.47412 * 210.00450 * 20 18 16 23 23 H 1.48511 * 109.46813 * 330.00322 * 20 18 16 24 24 C 1.53782 * 113.61339 * 160.71829 * 14 13 12 25 25 C 1.53782 * 87.08184 * 220.02221 * 24 14 13 26 26 C 1.53782 * 87.08081 * 25.43284 * 25 24 14 27 27 C 1.39963 * 118.22062 * 359.48462 * 9 8 7 28 28 C 1.37974 * 119.13107 * 0.27609 * 27 9 8 29 29 N 1.31910 * 120.98052 * 359.97349 * 28 27 9 30 30 H 1.09003 * 109.46701 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47220 * 299.99830 * 1 2 3 32 32 H 1.08999 * 109.47248 * 60.00283 * 1 2 3 33 33 H 1.08994 * 109.46983 * 239.99732 * 2 1 3 34 34 H 1.08999 * 109.47248 * 119.99717 * 2 1 3 35 35 H 1.09010 * 109.46917 * 59.99494 * 5 3 2 36 36 H 1.08995 * 109.47634 * 179.97438 * 5 3 2 37 37 H 1.08998 * 109.47183 * 300.00275 * 5 3 2 38 38 H 1.07995 * 120.52972 * 0.05261 * 8 7 6 39 39 H 0.96997 * 119.99709 * 359.97438 * 12 10 9 40 40 H 1.08994 * 109.47239 * 295.90832 * 13 12 10 41 41 H 1.08997 * 109.46958 * 55.91283 * 13 12 10 42 42 H 0.97003 * 119.99621 * 114.77863 * 15 14 13 43 43 H 0.96999 * 120.00221 * 179.97438 * 19 18 16 44 44 H 1.08993 * 113.61574 * 334.56981 * 24 14 13 45 45 H 1.09003 * 113.61314 * 105.47495 * 24 14 13 46 46 H 1.08997 * 113.61164 * 270.88668 * 25 24 14 47 47 H 1.08996 * 113.61645 * 139.98368 * 25 24 14 48 48 H 1.09000 * 113.61619 * 220.01967 * 26 25 24 49 49 H 1.08997 * 113.61344 * 89.12018 * 26 25 24 50 50 H 1.08004 * 120.43626 * 180.24628 * 27 9 8 51 51 H 1.08006 * 119.51016 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5647 1.4445 -0.1257 6 8 1.6619 2.0815 1.2210 7 6 1.4504 3.4210 1.1755 8 6 1.0859 4.0982 2.3322 9 6 0.8665 5.4750 2.2680 10 6 0.4709 6.2392 3.4742 11 8 0.3286 5.6668 4.5366 12 7 0.2689 7.5693 3.3931 13 6 -0.1227 8.3248 4.5855 14 6 -0.1868 9.8155 4.2466 15 7 1.1297 10.3911 3.9607 16 6 2.0763 10.4590 4.9479 17 1 1.8216 10.1817 5.9602 18 6 3.3630 10.8841 4.6476 19 7 4.2727 10.9498 5.5965 20 14 3.8037 11.3631 2.8966 21 1 3.5460 12.8123 2.7000 22 1 5.2403 11.0781 2.6521 23 1 2.9748 10.5794 1.9456 24 6 -1.0178 10.6389 5.2447 25 6 -1.5610 11.4139 4.0326 26 6 -1.2527 10.1624 3.1937 27 6 1.0356 6.1154 1.0350 28 6 1.4045 5.3685 -0.0648 29 7 1.5985 4.0673 0.0322 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.8531 0.9571 -1.0572 36 1 3.9280 2.4721 -0.1262 37 1 3.9994 0.9055 0.7160 38 1 0.9708 3.5672 3.2655 39 1 0.3828 8.0263 2.5451 40 1 -1.1019 7.9868 4.9244 41 1 0.6110 8.1630 5.3752 42 1 1.3308 10.7241 3.0721 43 1 5.1720 11.2466 5.3865 44 1 -1.7770 10.0561 5.7662 45 1 -0.4141 11.2480 5.9175 46 1 -0.9575 12.2803 3.7622 47 1 -2.6245 11.6424 4.1013 48 1 -0.8386 10.3868 2.2107 49 1 -2.0761 9.4494 3.1545 50 1 0.8790 7.1803 0.9456 51 1 1.5371 5.8565 -1.0192 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273180925.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:42:09 Heat of formation + Delta-G solvation = -31.075460 kcal Electronic energy + Delta-G solvation = -30635.857398 eV Core-core repulsion = 26535.663085 eV Total energy + Delta-G solvation = -4100.194313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.99532 -40.97857 -40.03880 -39.08885 -35.61844 -35.26216 -35.16861 -33.74920 -32.56363 -31.54421 -30.72968 -29.11876 -26.69943 -26.16194 -25.36565 -24.76899 -24.27541 -23.13500 -22.35679 -21.37355 -20.11337 -19.82639 -19.43136 -18.35754 -17.69253 -16.96814 -16.84718 -16.80604 -16.48415 -16.32311 -16.01470 -15.73935 -15.52109 -15.20061 -14.98119 -14.78010 -14.74758 -14.71295 -14.53493 -14.15021 -14.00172 -13.55642 -13.22712 -13.10046 -13.02109 -12.96926 -12.90237 -12.69415 -12.55701 -12.20300 -12.04616 -11.79067 -11.78481 -11.63161 -11.62295 -11.57053 -11.39788 -11.08010 -10.94866 -10.84340 -10.66853 -10.10480 -9.60104 -9.29951 -7.98880 -5.34228 -0.43485 0.06112 1.37106 1.43412 1.50646 1.72158 1.80315 2.21128 2.51045 2.73707 3.21628 3.29995 3.44223 3.49084 3.74780 3.75215 3.85582 3.91885 3.95764 3.97586 3.97933 4.08233 4.17929 4.18644 4.41571 4.55819 4.58376 4.62506 4.66884 4.70953 4.72405 4.77453 4.87279 4.93126 4.96853 4.99650 5.01071 5.04293 5.10743 5.14641 5.19117 5.27512 5.34367 5.36411 5.38775 5.45367 5.65174 5.85740 6.21124 6.24436 6.44627 6.69538 7.08030 7.11487 7.84476 8.04586 9.22837 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.002600 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.336783 B =10765.890815 C =11770.050669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C 0.079 3.921 4 H 0.089 0.911 5 C -0.166 4.166 6 O -0.310 6.310 7 C 0.317 3.683 8 C -0.156 4.156 9 C -0.058 4.058 10 C 0.549 3.451 11 O -0.578 6.578 12 N -0.686 5.686 13 C 0.127 3.873 14 C 0.160 3.840 15 N -0.722 5.722 16 C -0.214 4.214 17 H 0.048 0.952 18 C -0.069 4.069 19 N -0.989 5.989 20 Si 0.953 3.047 21 H -0.280 1.280 22 H -0.307 1.307 23 H -0.234 1.234 24 C -0.153 4.153 25 C -0.121 4.121 26 C -0.125 4.125 27 C -0.174 4.174 28 C 0.146 3.854 29 N -0.529 5.529 30 H 0.070 0.930 31 H 0.039 0.961 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.045 0.955 37 H 0.059 0.941 38 H 0.136 0.864 39 H 0.411 0.589 40 H 0.077 0.923 41 H 0.029 0.971 42 H 0.371 0.629 43 H 0.254 0.746 44 H 0.093 0.907 45 H 0.041 0.959 46 H 0.068 0.932 47 H 0.087 0.913 48 H 0.082 0.918 49 H 0.110 0.890 50 H 0.168 0.832 51 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.847 -14.965 -19.524 27.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C 0.024 3.976 4 H 0.107 0.893 5 C -0.224 4.224 6 O -0.218 6.218 7 C 0.138 3.862 8 C -0.178 4.178 9 C -0.068 4.068 10 C 0.336 3.664 11 O -0.458 6.458 12 N -0.335 5.335 13 C 0.001 3.999 14 C 0.069 3.931 15 N -0.364 5.364 16 C -0.345 4.345 17 H 0.066 0.934 18 C -0.259 4.259 19 N -0.639 5.639 20 Si 0.780 3.220 21 H -0.206 1.206 22 H -0.235 1.235 23 H -0.158 1.158 24 C -0.193 4.193 25 C -0.158 4.158 26 C -0.162 4.162 27 C -0.194 4.194 28 C -0.009 4.009 29 N -0.254 5.254 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.154 0.846 39 H 0.249 0.751 40 H 0.096 0.904 41 H 0.047 0.953 42 H 0.205 0.795 43 H 0.063 0.937 44 H 0.111 0.889 45 H 0.060 0.940 46 H 0.086 0.914 47 H 0.106 0.894 48 H 0.100 0.900 49 H 0.128 0.872 50 H 0.185 0.815 51 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -11.638 -16.043 -19.078 27.510 hybrid contribution 1.066 1.171 0.466 1.651 sum -10.572 -14.872 -18.612 26.065 Atomic orbital electron populations 1.21755 0.95399 1.02444 1.01450 1.21729 0.96602 0.93023 1.04183 1.22686 0.95809 0.93919 0.85228 0.89345 1.22208 0.94387 1.02182 1.03601 1.86301 1.82328 1.15582 1.37614 1.19598 0.92048 0.85225 0.89308 1.21064 1.04372 0.93595 0.98795 1.20080 0.99224 0.93290 0.94254 1.18487 0.77271 0.82777 0.87883 1.90745 1.53376 1.70441 1.31263 1.45553 1.67832 1.06374 1.13772 1.21769 0.98894 0.92486 0.86766 1.21104 0.85060 0.88752 0.98183 1.42258 1.10810 1.73179 1.10175 1.18758 0.90008 1.35541 0.90205 0.93373 1.25555 0.95810 1.02887 1.01694 1.69915 1.03945 1.55755 1.34309 0.85438 0.76926 0.78586 0.81004 1.20647 1.23503 1.15779 1.23338 0.99055 0.99387 0.97492 1.22602 1.01214 0.96646 0.95360 1.23170 0.97444 0.98293 0.97334 1.22476 1.02304 1.02999 0.91670 1.23065 0.90906 0.87031 0.99941 1.67245 1.19641 1.12652 1.25839 0.91068 0.94155 0.92501 0.87565 0.91161 0.88749 0.93561 0.92197 0.84609 0.75125 0.90447 0.95263 0.79489 0.93686 0.88854 0.93979 0.91375 0.89446 0.89953 0.87190 0.81479 0.77571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.81 71.98 0.71 -1.46 16 2 C -0.12 -1.58 5.64 30.59 0.17 -1.41 16 3 C 0.08 1.42 2.49 30.59 0.08 1.50 16 4 H 0.09 1.61 6.98 -2.38 -0.02 1.59 16 5 C -0.17 -2.71 9.53 71.98 0.69 -2.02 16 6 O -0.31 -7.64 9.30 -90.07 -0.84 -8.48 16 7 C 0.32 8.24 7.45 84.80 0.63 8.87 16 8 C -0.16 -4.56 9.61 22.75 0.22 -4.34 16 9 C -0.06 -1.62 5.91 -19.90 -0.12 -1.74 16 10 C 0.55 18.73 7.80 86.88 0.68 19.41 16 11 O -0.58 -24.51 16.44 -3.77 -0.06 -24.57 16 12 N -0.69 -20.85 5.40 -465.67 -2.51 -23.36 16 13 C 0.13 4.37 5.08 86.38 0.44 4.81 16 14 C 0.16 5.16 0.82 4.13 0.00 5.17 16 15 N -0.72 -29.47 4.98 -300.96 -1.50 -30.97 16 16 C -0.21 -11.55 9.53 84.03 0.80 -10.74 16 17 H 0.05 2.97 8.06 -2.91 -0.02 2.95 16 18 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 19 N -0.99 -63.39 13.97 21.65 0.30 -63.09 16 20 Si 0.95 42.97 27.68 68.60 1.90 44.87 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.31 -14.63 7.11 99.48 0.71 -13.93 16 23 H -0.23 -8.77 6.62 99.48 0.66 -8.11 16 24 C -0.15 -4.71 7.28 31.12 0.23 -4.48 16 25 C -0.12 -2.92 7.99 31.12 0.25 -2.67 16 26 C -0.12 -2.74 6.98 31.12 0.22 -2.52 16 27 C -0.17 -3.49 9.61 22.63 0.22 -3.27 16 28 C 0.15 2.56 11.17 84.62 0.94 3.51 16 29 N -0.53 -11.75 8.61 -309.13 -2.66 -14.42 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.04 0.73 7.82 -2.38 -0.02 0.71 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.14 4.29 7.74 -2.91 -0.02 4.27 16 39 H 0.41 10.06 6.37 -92.71 -0.59 9.47 16 40 H 0.08 2.39 8.01 -2.39 -0.02 2.37 16 41 H 0.03 1.30 7.80 -2.39 -0.02 1.28 16 42 H 0.37 14.04 5.80 -92.71 -0.54 13.50 16 43 H 0.25 15.67 8.31 -92.71 -0.77 14.90 16 44 H 0.09 2.46 8.01 -2.39 -0.02 2.44 16 45 H 0.04 1.60 7.87 -2.39 -0.02 1.58 16 46 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.08 1.58 8.09 -2.39 -0.02 1.56 16 49 H 0.11 1.91 8.10 -2.39 -0.02 1.89 16 50 H 0.17 2.41 6.53 -2.91 -0.02 2.39 16 51 H 0.21 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -77.15 416.23 1.00 -76.15 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: -0.24 Total: 38.75 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 6.62 Total: 5.12 kcal Atomic # 7 Polarization: -125.47 SS G_CDS: -6.37 Total: -131.84 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.90 Total: -33.05 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.90 Total: 44.87 kcal Total: -77.15 1.00 -76.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273180925.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.076 kcal (2) G-P(sol) polarization free energy of solvation -77.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds