Wall clock time and date at job start Wed Apr 1 2020 05:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47119 * 2 1 4 4 N 1.46906 * 109.47181 * 179.12709 * 3 2 1 5 5 C 1.46898 * 110.99465 * 295.60705 * 4 3 2 6 6 C 1.50704 * 109.47375 * 289.28626 * 5 4 3 7 7 O 1.21285 * 119.99827 * 354.93754 * 6 5 4 8 8 N 1.34779 * 119.99988 * 174.93718 * 6 5 4 9 9 C 1.46498 * 119.99949 * 180.02562 * 8 6 5 10 10 C 1.46899 * 111.00256 * 59.56051 * 4 3 2 11 11 C 1.50695 * 109.46819 * 66.04761 * 10 4 3 12 12 O 1.21292 * 120.00310 * 5.24022 * 11 10 4 13 13 N 1.34776 * 119.99755 * 185.23738 * 11 10 4 14 14 C 1.46501 * 120.00024 * 184.73158 * 13 11 10 15 15 C 1.50701 * 109.46770 * 269.99499 * 14 13 11 16 16 H 1.08000 * 120.00495 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00051 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00025 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00167 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47401 * 89.99901 * 19 17 15 21 21 H 1.48498 * 109.47120 * 210.00562 * 19 17 15 22 22 H 1.48510 * 109.47065 * 330.00091 * 19 17 15 23 23 C 1.39925 * 120.00099 * 4.72252 * 13 11 10 24 24 C 1.38873 * 120.06520 * 68.13572 * 23 13 11 25 25 C 1.38114 * 119.92594 * 179.97438 * 24 23 13 26 26 C 1.38284 * 120.07133 * 359.97438 * 25 24 23 27 27 C 1.38275 * 120.14263 * 0.04628 * 26 25 24 28 28 C 1.38118 * 120.06964 * 359.95351 * 27 26 25 29 29 H 1.09003 * 109.46887 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47253 * 300.00078 * 1 2 3 31 31 H 1.09001 * 109.47072 * 60.00266 * 1 2 3 32 32 H 1.09004 * 109.47122 * 239.99687 * 2 1 3 33 33 H 1.09001 * 109.47072 * 119.99734 * 2 1 3 34 34 H 1.09000 * 109.47399 * 59.12260 * 3 2 1 35 35 H 1.09004 * 109.46799 * 299.12188 * 3 2 1 36 36 H 1.09004 * 109.47614 * 49.28886 * 5 4 3 37 37 H 1.09002 * 109.47083 * 169.29121 * 5 4 3 38 38 H 0.97002 * 120.00099 * 359.97438 * 8 6 5 39 39 H 1.09001 * 109.47070 * 299.99817 * 9 8 6 40 40 H 1.09004 * 109.47440 * 59.99290 * 9 8 6 41 41 H 1.08998 * 109.47291 * 179.97438 * 9 8 6 42 42 H 1.08994 * 109.46833 * 306.05141 * 10 4 3 43 43 H 1.09001 * 109.46757 * 186.04616 * 10 4 3 44 44 H 1.08997 * 109.47382 * 29.99282 * 14 13 11 45 45 H 1.08999 * 109.47612 * 149.99661 * 14 13 11 46 46 H 0.96997 * 119.99873 * 179.97438 * 18 17 15 47 47 H 1.07999 * 120.03988 * 359.69948 * 24 23 13 48 48 H 1.07997 * 119.96420 * 179.97438 * 25 24 23 49 49 H 1.07997 * 119.92647 * 179.97438 * 26 25 24 50 50 H 1.08000 * 119.96999 * 179.97438 * 27 26 25 51 51 H 1.08001 * 120.03571 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4425 0.0211 5 6 4.0174 0.8561 1.2683 6 6 3.7428 1.7959 2.4139 7 8 3.2626 2.8889 2.1999 8 7 4.0307 1.4218 3.6763 9 6 3.7632 2.3352 4.7900 10 6 4.0523 0.7418 -1.1500 11 6 3.7117 1.5126 -2.3993 12 8 3.1624 2.5908 -2.3159 13 7 4.0176 1.0040 -3.6094 14 6 3.7815 1.7971 -4.8183 15 6 2.3922 1.5243 -5.3346 16 1 1.7493 0.8300 -4.8141 17 6 1.9415 2.1620 -6.4710 18 7 2.7241 3.0079 -7.1046 19 14 0.2191 1.8244 -7.1106 20 1 -0.7341 2.7824 -6.4952 21 1 0.1990 1.9850 -8.5867 22 1 -0.1767 0.4370 -6.7582 23 6 4.5608 -0.2815 -3.7110 24 6 3.7868 -1.3907 -3.3961 25 6 4.3258 -2.6583 -3.4980 26 6 5.6343 -2.8235 -3.9135 27 6 6.4077 -1.7211 -4.2273 28 6 5.8746 -0.4508 -4.1276 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6639 1.9609 0.8820 35 1 1.6896 1.9517 -0.8978 36 1 3.5192 -0.0959 1.4519 37 1 5.0917 0.6932 1.1816 38 1 4.4144 0.5475 3.8475 39 1 4.3329 3.2541 4.6512 40 1 2.6989 2.5688 4.8208 41 1 4.0583 1.8623 5.7267 42 1 3.6188 -0.2565 -1.2096 43 1 5.1354 0.6627 -1.0558 44 1 3.8799 2.8568 -4.5827 45 1 4.5121 1.5249 -5.5800 46 1 2.4071 3.4561 -7.9042 47 1 2.7661 -1.2621 -3.0677 48 1 3.7246 -3.5213 -3.2528 49 1 6.0535 -3.8157 -3.9919 50 1 7.4294 -1.8533 -4.5512 51 1 6.4793 0.4099 -4.3725 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056508779.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:25 Heat of formation + Delta-G solvation = -23.152464 kcal Electronic energy + Delta-G solvation = -31844.480612 eV Core-core repulsion = 27744.629866 eV Total energy + Delta-G solvation = -4099.850746 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.28824 -39.63546 -38.31621 -36.96207 -34.73488 -34.62567 -32.87105 -32.62381 -30.75558 -29.68663 -29.29790 -27.97470 -26.47667 -26.13134 -23.74541 -22.78287 -22.37027 -22.11412 -21.18176 -20.13420 -18.88100 -17.42352 -16.77182 -16.53128 -16.41935 -16.16826 -15.94583 -15.50003 -15.34866 -14.80648 -14.75035 -14.37236 -14.23644 -13.94632 -13.78557 -13.55756 -13.28157 -13.16876 -13.10788 -12.78734 -12.50960 -12.43385 -12.26390 -11.91669 -11.70265 -11.66498 -11.54318 -11.45502 -11.28515 -11.16093 -10.95214 -10.83770 -10.61924 -10.34997 -10.13789 -9.89106 -9.68847 -9.28321 -9.17026 -8.72823 -8.58098 -8.41566 -8.06293 -7.62048 -6.03498 -4.07538 1.54289 1.61268 2.62468 2.91525 3.32577 3.33360 3.38652 3.41506 3.66265 3.99901 4.19911 4.46157 4.65006 4.89261 4.93251 4.99204 5.03001 5.13747 5.14649 5.18185 5.19813 5.29854 5.31609 5.33735 5.35497 5.43058 5.51137 5.57288 5.65669 5.76071 5.78629 5.87525 5.93767 6.01794 6.18641 6.21224 6.23360 6.24086 6.55490 6.58186 6.70025 6.79497 6.90146 7.05063 7.09322 7.19657 7.36579 7.39966 7.51846 7.92071 8.20557 8.21252 8.39118 8.89514 9.05659 9.56736 11.04921 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009315 B = 0.003638 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.052311 B = 7694.533902 C = 9093.503767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.166 4.166 3 C 0.048 3.952 4 N -0.498 5.498 5 C 0.032 3.968 6 C 0.510 3.490 7 O -0.508 6.508 8 N -0.744 5.744 9 C 0.090 3.910 10 C 0.032 3.968 11 C 0.514 3.486 12 O -0.500 6.500 13 N -0.566 5.566 14 C 0.251 3.749 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.167 3.833 24 C -0.126 4.126 25 C -0.111 4.111 26 C -0.136 4.136 27 C -0.109 4.109 28 C -0.126 4.126 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.399 0.601 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.047 0.953 45 H 0.034 0.966 46 H 0.263 0.737 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.117 0.883 50 H 0.121 0.879 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.294 -13.535 19.088 24.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C -0.080 4.080 4 N -0.220 5.220 5 C -0.100 4.100 6 C 0.296 3.704 7 O -0.380 6.380 8 N -0.398 5.398 9 C -0.054 4.054 10 C -0.099 4.099 11 C 0.300 3.700 12 O -0.373 6.373 13 N -0.296 5.296 14 C 0.133 3.867 15 C -0.561 4.561 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.199 1.199 23 C 0.075 3.925 24 C -0.146 4.146 25 C -0.129 4.129 26 C -0.154 4.154 27 C -0.128 4.128 28 C -0.145 4.145 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.232 0.768 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.115 0.885 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.136 0.864 50 H 0.139 0.861 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.781 -11.400 18.772 22.711 hybrid contribution -0.967 -1.546 -0.427 1.873 sum 4.814 -12.946 18.345 22.963 Atomic orbital electron populations 1.21633 0.95111 1.01326 1.02248 1.22243 0.97331 0.99631 1.01277 1.22500 0.85403 0.94684 1.05403 1.61513 1.08946 1.52742 0.98804 1.22009 1.02242 0.95605 0.90131 1.20640 0.78063 0.88283 0.83460 1.90753 1.41443 1.21883 1.83970 1.45816 1.67129 1.20219 1.06681 1.21479 1.01619 0.94236 0.88093 1.22153 1.01250 0.96354 0.90103 1.20102 0.79460 0.86703 0.83697 1.90703 1.39299 1.21439 1.85891 1.46002 1.61403 1.13766 1.08384 1.19397 0.96772 0.91448 0.79074 1.21341 0.99183 1.25674 1.09923 0.92488 1.24900 0.97678 0.94882 0.96495 1.69923 1.36272 1.28004 1.19129 0.86512 0.84540 0.78638 0.77839 1.20487 1.21140 1.19945 1.17754 0.91369 0.85504 0.97918 1.21359 0.99323 0.92003 1.01873 1.20958 0.95458 0.96459 1.00051 1.21043 0.94601 0.98452 1.01299 1.20971 0.99747 0.92124 0.99926 1.21353 0.94429 0.97800 1.00966 0.93011 0.92882 0.92082 0.91814 0.92612 0.90014 0.88131 0.91589 0.87956 0.76804 0.92284 0.92398 0.90926 0.91541 0.88529 0.93512 0.94800 0.92697 0.86163 0.86263 0.86448 0.86126 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.16 0.37 -1.41 16 2 C -0.17 -2.14 5.28 -26.73 -0.14 -2.28 16 3 C 0.05 0.77 4.69 -3.82 -0.02 0.75 16 4 N -0.50 -7.79 4.03 -237.51 -0.96 -8.75 16 5 C 0.03 0.35 5.33 -4.97 -0.03 0.32 16 6 C 0.51 6.36 7.42 -10.98 -0.08 6.28 16 7 O -0.51 -8.92 14.99 5.55 0.08 -8.84 16 8 N -0.74 -6.11 5.71 -67.07 -0.38 -6.49 16 9 C 0.09 0.67 10.70 59.85 0.64 1.31 16 10 C 0.03 0.50 4.09 -4.98 -0.02 0.48 16 11 C 0.51 10.81 7.17 -10.99 -0.08 10.73 16 12 O -0.50 -12.77 14.20 5.55 0.08 -12.69 16 13 N -0.57 -12.13 2.50 -114.74 -0.29 -12.41 16 14 C 0.25 6.60 5.08 -5.19 -0.03 6.57 16 15 C -0.52 -14.91 9.39 -34.44 -0.32 -15.23 16 16 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 17 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 18 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 19 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.17 2.95 4.44 -83.70 -0.37 2.58 16 24 C -0.13 -1.96 8.27 -39.39 -0.33 -2.29 16 25 C -0.11 -1.39 10.04 -39.61 -0.40 -1.79 16 26 C -0.14 -1.58 10.04 -39.55 -0.40 -1.98 16 27 C -0.11 -1.37 10.04 -39.61 -0.40 -1.77 16 28 C -0.13 -1.96 9.70 -39.39 -0.38 -2.34 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.86 6.32 -51.93 -0.33 0.53 16 33 H 0.06 0.60 6.26 -51.93 -0.33 0.27 16 34 H 0.08 1.37 6.43 -51.93 -0.33 1.04 16 35 H 0.10 2.03 6.08 -51.93 -0.32 1.72 16 36 H 0.07 0.58 5.97 -51.93 -0.31 0.27 16 37 H 0.10 0.90 7.84 -51.93 -0.41 0.50 16 38 H 0.40 1.87 8.83 -40.82 -0.36 1.51 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.92 4.36 -51.93 -0.23 0.69 16 43 H 0.10 1.32 7.87 -51.93 -0.41 0.91 16 44 H 0.05 1.38 7.49 -51.93 -0.39 0.99 16 45 H 0.03 0.91 7.87 -51.93 -0.41 0.50 16 46 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.12 1.91 7.97 -52.49 -0.42 1.49 16 48 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 49 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 50 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 51 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 413.12 15.07 6.23 6.23 Total: -1.00 -36.65 413.12 -9.61 -46.25 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -8.00 Total: 3.94 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -2.08 Total: 1.65 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.89 Total: -53.71 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: 0.16 Total: -21.53 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.65 -9.61 -46.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056508779.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.102 kcal (2) G-P(sol) polarization free energy of solvation -36.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds