Wall clock time and date at job start Wed Apr 1 2020 05:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47119 * 2 1 4 4 N 1.46906 * 109.47181 * 179.12709 * 3 2 1 5 5 C 1.46898 * 110.99465 * 295.60705 * 4 3 2 6 6 C 1.50704 * 109.47375 * 289.28626 * 5 4 3 7 7 O 1.21285 * 119.99827 * 354.93754 * 6 5 4 8 8 N 1.34779 * 119.99988 * 174.93718 * 6 5 4 9 9 C 1.46498 * 119.99949 * 180.02562 * 8 6 5 10 10 C 1.46899 * 111.00256 * 59.56051 * 4 3 2 11 11 C 1.50695 * 109.46819 * 66.04761 * 10 4 3 12 12 O 1.21292 * 120.00310 * 5.24022 * 11 10 4 13 13 N 1.34776 * 119.99755 * 185.23738 * 11 10 4 14 14 C 1.46501 * 120.00024 * 184.73158 * 13 11 10 15 15 C 1.50701 * 109.46770 * 269.99499 * 14 13 11 16 16 H 1.08000 * 120.00495 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00051 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00025 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00167 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47401 * 89.99901 * 19 17 15 21 21 H 1.48498 * 109.47120 * 210.00562 * 19 17 15 22 22 H 1.48510 * 109.47065 * 330.00091 * 19 17 15 23 23 C 1.39925 * 120.00099 * 4.72252 * 13 11 10 24 24 C 1.38873 * 120.06520 * 68.13572 * 23 13 11 25 25 C 1.38114 * 119.92594 * 179.97438 * 24 23 13 26 26 C 1.38284 * 120.07133 * 359.97438 * 25 24 23 27 27 C 1.38275 * 120.14263 * 0.04628 * 26 25 24 28 28 C 1.38118 * 120.06964 * 359.95351 * 27 26 25 29 29 H 1.09003 * 109.46887 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47253 * 300.00078 * 1 2 3 31 31 H 1.09001 * 109.47072 * 60.00266 * 1 2 3 32 32 H 1.09004 * 109.47122 * 239.99687 * 2 1 3 33 33 H 1.09001 * 109.47072 * 119.99734 * 2 1 3 34 34 H 1.09000 * 109.47399 * 59.12260 * 3 2 1 35 35 H 1.09004 * 109.46799 * 299.12188 * 3 2 1 36 36 H 1.09004 * 109.47614 * 49.28886 * 5 4 3 37 37 H 1.09002 * 109.47083 * 169.29121 * 5 4 3 38 38 H 0.97002 * 120.00099 * 359.97438 * 8 6 5 39 39 H 1.09001 * 109.47070 * 299.99817 * 9 8 6 40 40 H 1.09004 * 109.47440 * 59.99290 * 9 8 6 41 41 H 1.08998 * 109.47291 * 179.97438 * 9 8 6 42 42 H 1.08994 * 109.46833 * 306.05141 * 10 4 3 43 43 H 1.09001 * 109.46757 * 186.04616 * 10 4 3 44 44 H 1.08997 * 109.47382 * 29.99282 * 14 13 11 45 45 H 1.08999 * 109.47612 * 149.99661 * 14 13 11 46 46 H 0.96997 * 119.99873 * 179.97438 * 18 17 15 47 47 H 1.07999 * 120.03988 * 359.69948 * 24 23 13 48 48 H 1.07997 * 119.96420 * 179.97438 * 25 24 23 49 49 H 1.07997 * 119.92647 * 179.97438 * 26 25 24 50 50 H 1.08000 * 119.96999 * 179.97438 * 27 26 25 51 51 H 1.08001 * 120.03571 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4425 0.0211 5 6 4.0174 0.8561 1.2683 6 6 3.7428 1.7959 2.4139 7 8 3.2626 2.8889 2.1999 8 7 4.0307 1.4218 3.6763 9 6 3.7632 2.3352 4.7900 10 6 4.0523 0.7418 -1.1500 11 6 3.7117 1.5126 -2.3993 12 8 3.1624 2.5908 -2.3159 13 7 4.0176 1.0040 -3.6094 14 6 3.7815 1.7971 -4.8183 15 6 2.3922 1.5243 -5.3346 16 1 1.7493 0.8300 -4.8141 17 6 1.9415 2.1620 -6.4710 18 7 2.7241 3.0079 -7.1046 19 14 0.2191 1.8244 -7.1106 20 1 -0.7341 2.7824 -6.4952 21 1 0.1990 1.9850 -8.5867 22 1 -0.1767 0.4370 -6.7582 23 6 4.5608 -0.2815 -3.7110 24 6 3.7868 -1.3907 -3.3961 25 6 4.3258 -2.6583 -3.4980 26 6 5.6343 -2.8235 -3.9135 27 6 6.4077 -1.7211 -4.2273 28 6 5.8746 -0.4508 -4.1276 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6639 1.9609 0.8820 35 1 1.6896 1.9517 -0.8978 36 1 3.5192 -0.0959 1.4519 37 1 5.0917 0.6932 1.1816 38 1 4.4144 0.5475 3.8475 39 1 4.3329 3.2541 4.6512 40 1 2.6989 2.5688 4.8208 41 1 4.0583 1.8623 5.7267 42 1 3.6188 -0.2565 -1.2096 43 1 5.1354 0.6627 -1.0558 44 1 3.8799 2.8568 -4.5827 45 1 4.5121 1.5249 -5.5800 46 1 2.4071 3.4561 -7.9042 47 1 2.7661 -1.2621 -3.0677 48 1 3.7246 -3.5213 -3.2528 49 1 6.0535 -3.8157 -3.9919 50 1 7.4294 -1.8533 -4.5512 51 1 6.4793 0.4099 -4.3725 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056508779.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:24 Heat of formation + Delta-G solvation = -49.993234 kcal Electronic energy + Delta-G solvation = -31845.644515 eV Core-core repulsion = 27744.629866 eV Total energy + Delta-G solvation = -4101.014649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.62903 -40.74240 -39.55697 -38.23035 -36.39649 -35.51440 -34.79942 -33.88461 -31.85904 -31.09346 -30.47987 -29.33876 -28.09132 -27.00736 -25.25228 -24.28144 -23.55737 -23.31040 -22.32638 -21.15422 -20.27311 -18.74666 -18.52875 -17.90295 -17.66641 -17.27446 -17.04107 -16.94900 -16.60945 -16.18452 -16.00242 -15.67950 -15.45155 -15.14332 -15.01359 -14.86783 -14.39437 -14.27704 -14.24391 -14.21660 -13.97696 -13.57640 -13.38123 -13.14733 -13.04943 -12.94414 -12.79690 -12.74897 -12.69698 -12.68855 -12.42417 -12.32954 -12.09546 -12.08437 -11.73191 -11.46237 -11.02984 -10.70890 -10.66568 -10.07846 -10.04661 -9.79900 -9.31885 -9.05797 -8.25380 -6.39848 0.40465 0.53967 1.31663 1.35700 1.44626 1.69498 1.74782 1.96138 2.30408 2.41050 2.90056 3.03569 3.04370 3.61726 3.84837 3.90216 3.92895 4.10108 4.16602 4.24515 4.25053 4.28996 4.32419 4.36441 4.39292 4.50729 4.61141 4.64176 4.64404 4.69363 4.78959 4.82745 4.93333 4.97324 5.01011 5.10099 5.13282 5.14710 5.19433 5.33420 5.45265 5.50317 5.57816 5.66719 5.69200 5.80383 5.87144 5.97396 6.01011 6.12284 6.66167 6.66540 6.78772 7.24935 7.38137 7.44476 8.81791 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009315 B = 0.003638 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.052311 B = 7694.533902 C = 9093.503767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.155 4.155 3 C 0.058 3.942 4 N -0.529 5.529 5 C 0.034 3.966 6 C 0.505 3.495 7 O -0.572 6.572 8 N -0.723 5.723 9 C 0.086 3.914 10 C 0.055 3.945 11 C 0.503 3.497 12 O -0.563 6.563 13 N -0.567 5.567 14 C 0.269 3.731 15 C -0.536 4.536 16 H 0.050 0.950 17 C 0.009 3.991 18 N -0.928 5.928 19 Si 0.965 3.035 20 H -0.281 1.281 21 H -0.272 1.272 22 H -0.261 1.261 23 C 0.127 3.873 24 C -0.136 4.136 25 C -0.101 4.101 26 C -0.118 4.118 27 C -0.102 4.102 28 C -0.141 4.141 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.033 0.967 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.102 0.898 37 H 0.132 0.868 38 H 0.421 0.579 39 H 0.042 0.958 40 H 0.043 0.957 41 H 0.114 0.886 42 H 0.091 0.909 43 H 0.121 0.879 44 H -0.002 1.002 45 H 0.021 0.979 46 H 0.267 0.733 47 H 0.109 0.891 48 H 0.154 0.846 49 H 0.160 0.840 50 H 0.152 0.848 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.246 -18.859 20.772 28.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.194 4.194 3 C -0.070 4.070 4 N -0.252 5.252 5 C -0.096 4.096 6 C 0.292 3.708 7 O -0.450 6.450 8 N -0.377 5.377 9 C -0.058 4.058 10 C -0.075 4.075 11 C 0.292 3.708 12 O -0.440 6.440 13 N -0.296 5.296 14 C 0.149 3.851 15 C -0.575 4.575 16 H 0.069 0.931 17 C -0.190 4.190 18 N -0.568 5.568 19 Si 0.789 3.211 20 H -0.207 1.207 21 H -0.197 1.197 22 H -0.185 1.185 23 C 0.036 3.964 24 C -0.155 4.155 25 C -0.119 4.119 26 C -0.136 4.136 27 C -0.120 4.120 28 C -0.161 4.161 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.119 0.881 37 H 0.150 0.850 38 H 0.258 0.742 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.133 0.867 42 H 0.108 0.892 43 H 0.139 0.861 44 H 0.016 0.984 45 H 0.039 0.961 46 H 0.076 0.924 47 H 0.127 0.873 48 H 0.171 0.829 49 H 0.177 0.823 50 H 0.169 0.831 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.788 -16.828 20.508 27.383 hybrid contribution -1.148 0.062 -0.899 1.459 sum 5.640 -16.767 19.609 26.409 Atomic orbital electron populations 1.21636 0.94864 1.02500 1.01258 1.22153 0.97534 0.97196 1.02511 1.22186 0.86365 0.96392 1.02025 1.61302 1.08579 1.54720 1.00647 1.22157 1.04159 0.96047 0.87273 1.20999 0.77268 0.87589 0.84983 1.90742 1.44650 1.24557 1.85025 1.45660 1.65438 1.21136 1.05474 1.21606 1.00643 0.94148 0.89391 1.21976 1.02576 0.95839 0.87145 1.21230 0.78040 0.86330 0.85174 1.90669 1.42154 1.24333 1.86879 1.45807 1.61545 1.15177 1.07029 1.18756 0.95740 0.89684 0.80886 1.21580 1.00031 1.25674 1.10193 0.93140 1.25834 1.01998 0.94494 0.96713 1.70045 1.38297 1.28808 1.19607 0.85454 0.79024 0.78923 0.77689 1.20678 1.19668 1.18533 1.18016 0.92757 0.84012 1.01594 1.21352 0.98800 0.92725 1.02649 1.21327 0.96233 0.95840 0.98486 1.21542 0.93799 0.99895 0.98369 1.21325 1.01245 0.90842 0.98576 1.21400 0.93744 0.99193 1.01729 0.90604 0.92258 0.94809 0.92344 0.89154 0.91250 0.93550 0.88075 0.84998 0.74241 0.93897 0.93774 0.86715 0.89178 0.86110 0.98384 0.96147 0.92363 0.87259 0.82877 0.82255 0.83076 0.87066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.91 71.98 0.71 -2.77 16 2 C -0.16 -3.84 5.28 30.59 0.16 -3.68 16 3 C 0.06 1.99 4.69 86.30 0.40 2.39 16 4 N -0.53 -16.78 4.03 -905.36 -3.65 -20.44 16 5 C 0.03 0.67 5.33 85.56 0.46 1.12 16 6 C 0.51 12.12 7.42 87.66 0.65 12.77 16 7 O -0.57 -20.94 14.99 -3.05 -0.05 -20.98 16 8 N -0.72 -10.12 5.71 -484.51 -2.77 -12.89 16 9 C 0.09 1.14 10.70 127.77 1.37 2.51 16 10 C 0.05 1.71 4.09 85.56 0.35 2.06 16 11 C 0.50 22.72 7.17 87.66 0.63 23.35 16 12 O -0.56 -31.75 14.20 -3.07 -0.04 -31.79 16 13 N -0.57 -25.97 2.50 -635.31 -1.59 -27.56 16 14 C 0.27 15.40 5.08 85.63 0.43 15.84 16 15 C -0.54 -32.39 9.39 25.60 0.24 -32.15 16 16 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 17 C 0.01 0.51 5.46 84.66 0.46 0.97 16 18 N -0.93 -58.13 13.29 21.45 0.28 -57.85 16 19 Si 0.97 46.74 29.54 68.60 2.03 48.77 16 20 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 23 C 0.13 4.54 4.44 38.15 0.17 4.71 16 24 C -0.14 -4.03 8.27 22.39 0.19 -3.84 16 25 C -0.10 -2.09 10.04 22.25 0.22 -1.87 16 26 C -0.12 -2.13 10.04 22.29 0.22 -1.91 16 27 C -0.10 -2.20 10.04 22.25 0.22 -1.98 16 28 C -0.14 -4.32 9.70 22.39 0.22 -4.11 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 1.51 6.32 -2.38 -0.02 1.50 16 33 H 0.09 1.61 6.26 -2.39 -0.01 1.59 16 34 H 0.07 2.49 6.43 -2.39 -0.02 2.48 16 35 H 0.05 2.08 6.08 -2.38 -0.01 2.06 16 36 H 0.10 1.31 5.97 -2.38 -0.01 1.29 16 37 H 0.13 1.83 7.84 -2.39 -0.02 1.81 16 38 H 0.42 2.25 8.83 -92.71 -0.82 1.43 16 39 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.09 2.37 4.36 -2.39 -0.01 2.36 16 43 H 0.12 3.14 7.87 -2.39 -0.02 3.12 16 44 H 0.00 -0.13 7.49 -2.39 -0.02 -0.14 16 45 H 0.02 1.20 7.87 -2.39 -0.02 1.18 16 46 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 47 H 0.11 3.42 7.97 -2.91 -0.02 3.40 16 48 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 49 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 50 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 51 H 0.11 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -91.43 413.12 1.44 -89.99 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.12 Total: 19.34 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 7.11 Total: 13.42 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -7.73 Total: -118.74 kcal Atomic # 8 Polarization: -52.69 SS G_CDS: -0.09 Total: -52.78 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -91.43 1.44 -89.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056508779.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.993 kcal (2) G-P(sol) polarization free energy of solvation -91.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds