Wall clock time and date at job start Wed Apr 1 2020 05:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47168 * 2 1 4 4 N 1.46509 * 109.46973 * 179.97438 * 3 2 1 5 5 C 1.36933 * 119.99733 * 264.01464 * 4 3 2 6 6 H 1.08000 * 119.99593 * 187.77982 * 5 4 3 7 7 C 1.38810 * 120.00455 * 7.77416 * 5 4 3 8 8 N 1.31620 * 119.99381 * 25.65799 * 7 5 4 9 9 Si 1.86801 * 120.00316 * 205.65557 * 7 5 4 10 10 H 1.48493 * 109.47058 * 84.98800 * 9 7 5 11 11 H 1.48501 * 109.47065 * 204.99177 * 9 7 5 12 12 H 1.48504 * 109.46909 * 324.99050 * 9 7 5 13 13 C 1.46495 * 119.99602 * 84.01438 * 4 3 2 14 14 C 1.50697 * 109.47464 * 269.99508 * 13 4 3 15 15 O 1.21283 * 119.99474 * 0.02562 * 14 13 4 16 16 N 1.34773 * 120.00518 * 180.02562 * 14 13 4 17 17 C 1.46502 * 119.99666 * 0.02562 * 16 14 13 18 18 C 1.53001 * 109.47077 * 270.00016 * 17 16 14 19 19 C 1.50699 * 109.46840 * 180.02562 * 18 17 16 20 20 N 1.34781 * 120.00023 * 180.02562 * 19 18 17 21 21 O 1.21274 * 120.00380 * 359.97438 * 19 18 17 22 22 C 1.46502 * 120.00189 * 180.02562 * 16 14 13 23 23 C 1.50697 * 109.47187 * 90.00023 * 22 16 14 24 24 C 1.38231 * 120.00168 * 90.00424 * 23 22 16 25 25 C 1.38234 * 120.00130 * 179.97438 * 24 23 22 26 26 C 1.38233 * 119.99853 * 359.97394 * 25 24 23 27 27 C 1.38234 * 120.00339 * 0.27679 * 26 25 24 28 28 C 1.38236 * 119.99752 * 269.97265 * 23 22 16 29 29 H 1.09007 * 109.47188 * 59.99678 * 1 2 3 30 30 H 1.08994 * 109.47324 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47001 * 300.00409 * 1 2 3 32 32 H 1.08997 * 109.47333 * 239.99807 * 2 1 3 33 33 H 1.09004 * 109.46956 * 119.99851 * 2 1 3 34 34 H 1.09001 * 109.47316 * 60.00173 * 3 2 1 35 35 H 1.08997 * 109.47429 * 299.99684 * 3 2 1 36 36 H 0.97005 * 119.99463 * 179.97438 * 8 7 5 37 37 H 1.09009 * 109.46951 * 150.00147 * 13 4 3 38 38 H 1.09003 * 109.47668 * 30.00285 * 13 4 3 39 39 H 1.08993 * 109.47456 * 30.00179 * 17 16 14 40 40 H 1.09003 * 109.46966 * 150.00433 * 17 16 14 41 41 H 1.09007 * 109.47199 * 300.00214 * 18 17 16 42 42 H 1.08997 * 109.47340 * 59.99847 * 18 17 16 43 43 H 0.97010 * 119.99656 * 359.97438 * 20 19 18 44 44 H 0.96998 * 120.00765 * 179.97438 * 20 19 18 45 45 H 1.08997 * 109.46713 * 329.99455 * 22 16 14 46 46 H 1.08999 * 109.46577 * 209.99824 * 22 16 14 47 47 H 1.08004 * 119.99982 * 359.97231 * 24 23 22 48 48 H 1.07997 * 119.99982 * 179.97438 * 25 24 23 49 49 H 1.08003 * 120.00070 * 180.02562 * 26 25 24 50 50 H 1.07999 * 120.00692 * 179.72453 * 27 26 25 51 51 H 1.08002 * 120.00022 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1892 1.5662 1.1803 6 1 5.2618 1.6926 1.1718 7 6 3.5043 1.5295 2.3871 8 7 2.3518 0.8992 2.4706 9 14 4.2181 2.3744 3.8924 10 1 3.8363 3.8094 3.8823 11 1 3.6873 1.7296 5.1203 12 1 5.6982 2.2559 3.8713 13 6 4.2380 1.3099 -1.2609 14 6 4.4894 -0.1485 -1.5451 15 8 4.0946 -0.9940 -0.7703 16 7 5.1527 -0.5133 -2.6601 17 6 5.6300 0.5081 -3.5956 18 6 4.5475 0.7891 -4.6397 19 6 5.0387 1.8393 -5.6024 20 7 4.2478 2.2491 -6.6139 21 8 6.1453 2.3164 -5.4665 22 6 5.3965 -1.9312 -2.9366 23 6 4.2503 -2.4909 -3.7390 24 6 4.2900 -2.4528 -5.1202 25 6 3.2388 -2.9667 -5.8563 26 6 2.1482 -3.5191 -5.2111 27 6 2.1061 -3.5524 -3.8298 28 6 3.1595 -3.0429 -3.0938 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.8733 0.8732 3.3141 37 1 5.1905 1.8345 -1.1845 38 1 3.6493 1.7417 -2.0703 39 1 5.8547 1.4243 -3.0497 40 1 6.5315 0.1516 -4.0939 41 1 4.3227 -0.1272 -5.1858 42 1 3.6459 1.1455 -4.1416 43 1 3.3624 1.8677 -6.7224 44 1 4.5637 2.9253 -7.2334 45 1 5.4816 -2.4753 -1.9960 46 1 6.3221 -2.0370 -3.5025 47 1 5.1423 -2.0216 -5.6243 48 1 3.2696 -2.9366 -6.9354 49 1 1.3270 -3.9209 -5.7862 50 1 1.2520 -3.9800 -3.3257 51 1 3.1286 -3.0727 -2.0146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058911509.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:19 Heat of formation + Delta-G solvation = -18.397938 kcal Electronic energy + Delta-G solvation = -32415.732272 eV Core-core repulsion = 28316.087697 eV Total energy + Delta-G solvation = -4099.644574 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.08129 -39.30894 -38.53394 -36.02840 -35.11559 -33.81670 -32.42489 -31.81047 -31.13221 -30.89669 -30.24604 -27.45064 -25.48950 -25.40882 -24.10233 -22.50741 -22.06146 -21.14589 -20.56914 -19.81703 -18.63479 -17.55453 -17.02599 -16.81821 -16.66625 -16.29391 -15.71003 -15.31785 -15.13259 -14.82187 -14.67026 -14.47081 -13.81802 -13.65643 -13.38782 -13.37993 -13.06285 -12.99361 -12.81564 -12.76612 -12.47165 -12.26106 -11.89491 -11.73538 -11.41082 -11.36497 -11.11878 -10.95974 -10.89753 -10.81608 -10.57614 -10.39571 -10.16415 -10.07152 -9.90146 -9.87036 -9.65717 -9.09080 -9.03629 -8.85697 -8.65401 -8.25848 -8.19898 -6.83576 -5.68894 -2.99777 1.33419 1.44711 2.51560 3.17541 3.44201 3.51116 3.52163 3.52738 3.61180 3.98791 4.55423 4.74732 4.83379 4.85573 4.95231 4.99974 5.04929 5.16821 5.27956 5.40946 5.48023 5.53056 5.54904 5.63711 5.67502 5.78769 5.87341 6.03642 6.06091 6.13467 6.16539 6.26636 6.33114 6.36952 6.45890 6.58006 6.58782 6.66119 6.72089 6.74417 6.93678 7.04900 7.06134 7.12289 7.32134 7.42986 7.72719 7.90144 7.95317 8.10535 8.33762 8.39686 9.06871 9.29237 9.89238 10.32850 11.33765 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009833 B = 0.003966 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.731592 B = 7058.080897 C = 8447.333294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.172 3.828 4 N -0.568 5.568 5 C -0.249 4.249 6 H 0.073 0.927 7 C 0.003 3.997 8 N -0.885 5.885 9 Si 0.897 3.103 10 H -0.289 1.289 11 H -0.294 1.294 12 H -0.282 1.282 13 C 0.133 3.867 14 C 0.474 3.526 15 O -0.497 6.497 16 N -0.624 5.624 17 C 0.133 3.867 18 C -0.170 4.170 19 C 0.522 3.478 20 N -0.859 5.859 21 O -0.544 6.544 22 C 0.149 3.851 23 C -0.095 4.095 24 C -0.116 4.116 25 C -0.129 4.129 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.090 4.090 29 H 0.026 0.974 30 H 0.030 0.970 31 H 0.048 0.952 32 H 0.025 0.975 33 H 0.099 0.901 34 H 0.090 0.910 35 H -0.002 1.002 36 H 0.250 0.750 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.402 0.598 44 H 0.399 0.601 45 H 0.089 0.911 46 H 0.075 0.925 47 H 0.117 0.883 48 H 0.116 0.884 49 H 0.116 0.884 50 H 0.119 0.881 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.069 -4.182 -20.211 20.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C 0.047 3.953 4 N -0.285 5.285 5 C -0.378 4.378 6 H 0.091 0.909 7 C -0.195 4.195 8 N -0.530 5.530 9 Si 0.727 3.273 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.208 1.208 13 C 0.001 3.999 14 C 0.260 3.740 15 O -0.368 6.368 16 N -0.361 5.361 17 C 0.008 3.992 18 C -0.211 4.211 19 C 0.307 3.693 20 N -0.422 5.422 21 O -0.421 6.421 22 C 0.026 3.974 23 C -0.096 4.096 24 C -0.135 4.135 25 C -0.147 4.147 26 C -0.142 4.142 27 C -0.139 4.139 28 C -0.109 4.109 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.016 0.984 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.230 0.770 44 H 0.230 0.770 45 H 0.107 0.893 46 H 0.094 0.906 47 H 0.135 0.865 48 H 0.134 0.866 49 H 0.134 0.866 50 H 0.137 0.863 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.472 -4.431 -19.250 19.759 hybrid contribution -0.188 0.213 0.178 0.336 sum 0.284 -4.217 -19.072 19.535 Atomic orbital electron populations 1.21682 0.99404 0.98972 0.99587 1.22045 0.91577 0.99940 1.02251 1.20992 0.81312 0.94970 0.98046 1.44276 1.01927 1.81292 1.01027 1.19215 0.92116 1.42917 0.83516 0.90912 1.24704 0.97633 1.00021 0.97124 1.70217 1.16928 1.41102 1.24707 0.86372 0.78425 0.79812 0.82661 1.21615 1.22018 1.20795 1.20996 0.97743 0.90300 0.90884 1.23665 0.76176 0.95103 0.79050 1.90664 1.47618 1.52894 1.45659 1.48673 1.59444 1.04686 1.23286 1.21160 0.94847 0.92948 0.90255 1.22331 1.02226 0.98787 0.97748 1.20684 0.84769 0.82585 0.81230 1.43927 1.20350 1.45653 1.32306 1.90754 1.20573 1.57423 1.73346 1.20294 0.94182 0.83324 0.99603 1.20362 0.97193 0.98269 0.93784 1.20983 0.98687 1.00322 0.93493 1.21037 0.94447 0.99849 0.99376 1.21106 0.98236 1.00186 0.94667 1.21205 0.98652 0.99959 0.94062 1.21324 0.92732 0.95906 1.00922 0.95495 0.95091 0.93249 0.95642 0.88220 0.89159 0.98366 0.93915 0.90822 0.91928 0.89294 0.90278 0.88113 0.88347 0.77031 0.77042 0.89256 0.90631 0.86510 0.86554 0.86572 0.86295 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.91 37.16 0.37 -2.43 16 2 C -0.12 -2.81 4.74 -26.73 -0.13 -2.94 16 3 C 0.17 4.13 4.92 -4.04 -0.02 4.11 16 4 N -0.57 -13.90 2.12 -174.61 -0.37 -14.27 16 5 C -0.25 -6.75 9.70 -15.06 -0.15 -6.89 16 6 H 0.07 1.96 7.94 -52.49 -0.42 1.55 16 7 C 0.00 0.09 4.89 -17.43 -0.09 0.00 16 8 N -0.89 -24.88 8.63 55.49 0.48 -24.40 16 9 Si 0.90 21.79 29.62 -169.99 -5.04 16.75 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.13 2.65 4.74 -5.20 -0.02 2.62 16 14 C 0.47 9.18 7.39 -10.99 -0.08 9.10 16 15 O -0.50 -11.68 13.14 5.55 0.07 -11.61 16 16 N -0.62 -9.19 2.46 -175.06 -0.43 -9.62 16 17 C 0.13 1.63 4.54 -4.04 -0.02 1.61 16 18 C -0.17 -1.75 6.02 -27.88 -0.17 -1.92 16 19 C 0.52 5.53 8.10 -10.98 -0.09 5.44 16 20 N -0.86 -5.86 8.87 31.22 0.28 -5.58 16 21 O -0.54 -7.88 16.82 5.56 0.09 -7.78 16 22 C 0.15 2.00 5.58 -5.19 -0.03 1.97 16 23 C -0.09 -1.21 5.39 -104.63 -0.56 -1.78 16 24 C -0.12 -1.22 7.54 -39.59 -0.30 -1.52 16 25 C -0.13 -1.27 10.05 -39.58 -0.40 -1.66 16 26 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 27 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 28 C -0.09 -1.30 9.70 -39.58 -0.38 -1.68 16 29 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 32 H 0.02 0.60 6.42 -51.93 -0.33 0.27 16 33 H 0.10 2.79 6.36 -51.93 -0.33 2.46 16 34 H 0.09 2.41 5.82 -51.93 -0.30 2.11 16 35 H 0.00 -0.04 7.98 -51.93 -0.41 -0.46 16 36 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.07 1.40 7.29 -51.92 -0.38 1.02 16 38 H 0.06 1.10 7.00 -51.93 -0.36 0.73 16 39 H 0.09 1.18 6.40 -51.93 -0.33 0.85 16 40 H 0.08 0.89 7.85 -51.93 -0.41 0.48 16 41 H 0.10 0.94 5.26 -51.93 -0.27 0.67 16 42 H 0.10 1.06 7.22 -51.93 -0.37 0.69 16 43 H 0.40 1.76 8.83 -40.82 -0.36 1.40 16 44 H 0.40 2.33 8.93 -40.82 -0.36 1.97 16 45 H 0.09 1.39 7.36 -51.93 -0.38 1.00 16 46 H 0.08 0.82 7.84 -51.93 -0.41 0.41 16 47 H 0.12 1.02 7.73 -52.48 -0.41 0.62 16 48 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 49 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 50 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 51 H 0.13 2.19 7.58 -52.49 -0.40 1.79 16 LS Contribution 407.01 15.07 6.13 6.13 Total: -1.00 -33.40 407.01 -9.55 -42.96 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -7.92 Total: 7.00 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -2.86 Total: 0.42 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.04 Total: -53.88 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.17 Total: -19.39 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.04 Total: 16.75 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.40 -9.55 -42.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058911509.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.561 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds