Wall clock time and date at job start Wed Apr 1 2020 05:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47168 * 2 1 4 4 N 1.46509 * 109.46973 * 179.97438 * 3 2 1 5 5 C 1.36933 * 119.99733 * 264.01464 * 4 3 2 6 6 H 1.08000 * 119.99593 * 187.77982 * 5 4 3 7 7 C 1.38810 * 120.00455 * 7.77416 * 5 4 3 8 8 N 1.31620 * 119.99381 * 25.65799 * 7 5 4 9 9 Si 1.86801 * 120.00316 * 205.65557 * 7 5 4 10 10 H 1.48493 * 109.47058 * 84.98800 * 9 7 5 11 11 H 1.48501 * 109.47065 * 204.99177 * 9 7 5 12 12 H 1.48504 * 109.46909 * 324.99050 * 9 7 5 13 13 C 1.46495 * 119.99602 * 84.01438 * 4 3 2 14 14 C 1.50697 * 109.47464 * 269.99508 * 13 4 3 15 15 O 1.21283 * 119.99474 * 0.02562 * 14 13 4 16 16 N 1.34773 * 120.00518 * 180.02562 * 14 13 4 17 17 C 1.46502 * 119.99666 * 0.02562 * 16 14 13 18 18 C 1.53001 * 109.47077 * 270.00016 * 17 16 14 19 19 C 1.50699 * 109.46840 * 180.02562 * 18 17 16 20 20 N 1.34781 * 120.00023 * 180.02562 * 19 18 17 21 21 O 1.21274 * 120.00380 * 359.97438 * 19 18 17 22 22 C 1.46502 * 120.00189 * 180.02562 * 16 14 13 23 23 C 1.50697 * 109.47187 * 90.00023 * 22 16 14 24 24 C 1.38231 * 120.00168 * 90.00424 * 23 22 16 25 25 C 1.38234 * 120.00130 * 179.97438 * 24 23 22 26 26 C 1.38233 * 119.99853 * 359.97394 * 25 24 23 27 27 C 1.38234 * 120.00339 * 0.27679 * 26 25 24 28 28 C 1.38236 * 119.99752 * 269.97265 * 23 22 16 29 29 H 1.09007 * 109.47188 * 59.99678 * 1 2 3 30 30 H 1.08994 * 109.47324 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47001 * 300.00409 * 1 2 3 32 32 H 1.08997 * 109.47333 * 239.99807 * 2 1 3 33 33 H 1.09004 * 109.46956 * 119.99851 * 2 1 3 34 34 H 1.09001 * 109.47316 * 60.00173 * 3 2 1 35 35 H 1.08997 * 109.47429 * 299.99684 * 3 2 1 36 36 H 0.97005 * 119.99463 * 179.97438 * 8 7 5 37 37 H 1.09009 * 109.46951 * 150.00147 * 13 4 3 38 38 H 1.09003 * 109.47668 * 30.00285 * 13 4 3 39 39 H 1.08993 * 109.47456 * 30.00179 * 17 16 14 40 40 H 1.09003 * 109.46966 * 150.00433 * 17 16 14 41 41 H 1.09007 * 109.47199 * 300.00214 * 18 17 16 42 42 H 1.08997 * 109.47340 * 59.99847 * 18 17 16 43 43 H 0.97010 * 119.99656 * 359.97438 * 20 19 18 44 44 H 0.96998 * 120.00765 * 179.97438 * 20 19 18 45 45 H 1.08997 * 109.46713 * 329.99455 * 22 16 14 46 46 H 1.08999 * 109.46577 * 209.99824 * 22 16 14 47 47 H 1.08004 * 119.99982 * 359.97231 * 24 23 22 48 48 H 1.07997 * 119.99982 * 179.97438 * 25 24 23 49 49 H 1.08003 * 120.00070 * 180.02562 * 26 25 24 50 50 H 1.07999 * 120.00692 * 179.72453 * 27 26 25 51 51 H 1.08002 * 120.00022 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1892 1.5662 1.1803 6 1 5.2618 1.6926 1.1718 7 6 3.5043 1.5295 2.3871 8 7 2.3518 0.8992 2.4706 9 14 4.2181 2.3744 3.8924 10 1 3.8363 3.8094 3.8823 11 1 3.6873 1.7296 5.1203 12 1 5.6982 2.2559 3.8713 13 6 4.2380 1.3099 -1.2609 14 6 4.4894 -0.1485 -1.5451 15 8 4.0946 -0.9940 -0.7703 16 7 5.1527 -0.5133 -2.6601 17 6 5.6300 0.5081 -3.5956 18 6 4.5475 0.7891 -4.6397 19 6 5.0387 1.8393 -5.6024 20 7 4.2478 2.2491 -6.6139 21 8 6.1453 2.3164 -5.4665 22 6 5.3965 -1.9312 -2.9366 23 6 4.2503 -2.4909 -3.7390 24 6 4.2900 -2.4528 -5.1202 25 6 3.2388 -2.9667 -5.8563 26 6 2.1482 -3.5191 -5.2111 27 6 2.1061 -3.5524 -3.8298 28 6 3.1595 -3.0429 -3.0938 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.8733 0.8732 3.3141 37 1 5.1905 1.8345 -1.1845 38 1 3.6493 1.7417 -2.0703 39 1 5.8547 1.4243 -3.0497 40 1 6.5315 0.1516 -4.0939 41 1 4.3227 -0.1272 -5.1858 42 1 3.6459 1.1455 -4.1416 43 1 3.3624 1.8677 -6.7224 44 1 4.5637 2.9253 -7.2334 45 1 5.4816 -2.4753 -1.9960 46 1 6.3221 -2.0370 -3.5025 47 1 5.1423 -2.0216 -5.6243 48 1 3.2696 -2.9366 -6.9354 49 1 1.3270 -3.9209 -5.7862 50 1 1.2520 -3.9800 -3.3257 51 1 3.1286 -3.0727 -2.0146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058911509.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:18 Heat of formation + Delta-G solvation = -39.734146 kcal Electronic energy + Delta-G solvation = -32416.657479 eV Core-core repulsion = 28316.087697 eV Total energy + Delta-G solvation = -4100.569782 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.22312 -40.23814 -39.72482 -37.71994 -36.58038 -34.56793 -33.74531 -33.56093 -32.81028 -31.81244 -31.24949 -28.99144 -27.35194 -26.69664 -25.23232 -23.73886 -23.39789 -22.28771 -21.67099 -21.36455 -20.00360 -18.72601 -18.29483 -17.96158 -17.83579 -17.39721 -16.98611 -16.59533 -16.30608 -16.05866 -15.84393 -15.77025 -15.51857 -15.07885 -14.78248 -14.59144 -14.28029 -14.25377 -14.04794 -13.98368 -13.66932 -13.52133 -13.40200 -13.11093 -12.96096 -12.84395 -12.69965 -12.45245 -12.27194 -12.05832 -12.01702 -11.92627 -11.83865 -11.78841 -11.55212 -11.06786 -11.02970 -10.60912 -10.56148 -10.22963 -9.75258 -9.69182 -9.48321 -8.77704 -7.74819 -5.06945 0.42740 0.54633 1.49104 1.50863 1.57834 1.70607 1.97703 2.14365 2.56850 2.78012 3.03057 3.32897 3.69805 3.81215 3.87431 3.99447 4.04259 4.09821 4.20706 4.31640 4.34241 4.43714 4.52145 4.56199 4.62051 4.64821 4.66365 4.72892 4.77361 4.79516 4.83930 4.89093 4.94315 5.08914 5.16232 5.21142 5.25941 5.45053 5.57778 5.60498 5.63868 5.68101 5.73371 5.80244 5.94064 5.98234 6.17086 6.32808 6.36589 6.50994 6.58801 7.24851 7.41550 7.57530 7.95084 8.32631 9.25650 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009833 B = 0.003966 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.731592 B = 7058.080897 C = 8447.333294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 C 0.177 3.823 4 N -0.585 5.585 5 C -0.257 4.257 6 H 0.067 0.933 7 C -0.046 4.046 8 N -0.906 5.906 9 Si 0.955 3.045 10 H -0.284 1.284 11 H -0.301 1.301 12 H -0.279 1.279 13 C 0.131 3.869 14 C 0.476 3.524 15 O -0.548 6.548 16 N -0.610 5.610 17 C 0.128 3.872 18 C -0.159 4.159 19 C 0.525 3.475 20 N -0.838 5.838 21 O -0.587 6.587 22 C 0.150 3.850 23 C -0.104 4.104 24 C -0.109 4.109 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.135 4.135 28 C -0.118 4.118 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.018 0.982 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.022 0.978 36 H 0.243 0.757 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.096 0.904 43 H 0.417 0.583 44 H 0.408 0.592 45 H 0.057 0.943 46 H 0.109 0.891 47 H 0.144 0.856 48 H 0.153 0.847 49 H 0.143 0.857 50 H 0.119 0.881 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.038 -3.761 -24.428 24.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.141 4.141 3 C 0.052 3.948 4 N -0.304 5.304 5 C -0.387 4.387 6 H 0.085 0.915 7 C -0.241 4.241 8 N -0.552 5.552 9 Si 0.785 3.215 10 H -0.211 1.211 11 H -0.228 1.228 12 H -0.205 1.205 13 C 0.000 4.000 14 C 0.263 3.737 15 O -0.423 6.423 16 N -0.345 5.345 17 C 0.005 3.995 18 C -0.199 4.199 19 C 0.310 3.690 20 N -0.402 5.402 21 O -0.468 6.468 22 C 0.028 3.972 23 C -0.105 4.105 24 C -0.127 4.127 25 C -0.137 4.137 26 C -0.138 4.138 27 C -0.153 4.153 28 C -0.137 4.137 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.041 0.959 36 H 0.053 0.947 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.135 0.865 42 H 0.114 0.886 43 H 0.247 0.753 44 H 0.239 0.761 45 H 0.075 0.925 46 H 0.127 0.873 47 H 0.162 0.838 48 H 0.171 0.829 49 H 0.161 0.839 50 H 0.137 0.863 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.443 -4.000 -23.567 23.909 hybrid contribution -0.137 0.026 1.300 1.307 sum 0.306 -3.974 -22.268 22.622 Atomic orbital electron populations 1.21566 0.96781 0.99931 1.00392 1.21750 0.93773 0.99132 0.99432 1.20846 0.81475 0.94845 0.97621 1.44333 1.02242 1.82118 1.01684 1.19399 0.92044 1.42380 0.84854 0.91496 1.25341 0.98445 1.00948 0.99412 1.70406 1.18019 1.42158 1.24600 0.85466 0.77744 0.78779 0.79552 1.21105 1.22800 1.20459 1.21119 0.98141 0.90869 0.89881 1.23170 0.76382 0.94293 0.79863 1.90670 1.50041 1.53858 1.47729 1.48373 1.57685 1.06129 1.22355 1.21325 0.96358 0.91713 0.90149 1.22170 1.00981 0.99581 0.97217 1.20610 0.84364 0.82297 0.81692 1.43742 1.20496 1.44965 1.30983 1.90752 1.22485 1.58951 1.74587 1.20362 0.96233 0.81733 0.98881 1.20243 0.96279 0.99054 0.94961 1.21225 0.99796 0.99611 0.92061 1.21463 0.93219 0.97838 1.01152 1.21436 0.99393 0.99346 0.93609 1.21312 0.98211 1.00371 0.95390 1.21135 0.94844 0.98590 0.99137 0.92795 0.94096 0.94158 0.96359 0.93026 0.92024 0.95944 0.94727 0.90098 0.89246 0.90357 0.88490 0.86499 0.88614 0.75258 0.76090 0.92481 0.87280 0.83803 0.82894 0.83891 0.86273 0.89410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 9.91 71.98 0.71 -4.50 16 2 C -0.10 -4.96 4.74 30.59 0.14 -4.81 16 3 C 0.18 8.69 4.92 86.38 0.43 9.11 16 4 N -0.59 -29.33 2.12 -706.33 -1.49 -30.83 16 5 C -0.26 -14.38 9.70 84.03 0.82 -13.56 16 6 H 0.07 3.72 7.94 -2.91 -0.02 3.70 16 7 C -0.05 -2.60 4.89 84.86 0.42 -2.18 16 8 N -0.91 -53.26 8.63 21.65 0.19 -53.07 16 9 Si 0.95 46.24 29.62 68.60 2.03 48.28 16 10 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 11 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 C 0.13 5.21 4.74 85.63 0.41 5.61 16 14 C 0.48 18.88 7.39 87.66 0.65 19.53 16 15 O -0.55 -27.27 13.14 -3.04 -0.04 -27.31 16 16 N -0.61 -17.67 2.46 -826.16 -2.03 -19.70 16 17 C 0.13 2.88 4.54 86.38 0.39 3.27 16 18 C -0.16 -2.78 6.02 29.85 0.18 -2.60 16 19 C 0.53 9.48 8.10 87.66 0.71 10.19 16 20 N -0.84 -8.32 8.87 -173.54 -1.54 -9.86 16 21 O -0.59 -15.72 16.82 -3.01 -0.05 -15.77 16 22 C 0.15 3.99 5.58 85.63 0.48 4.46 16 23 C -0.10 -2.57 5.39 -19.87 -0.11 -2.67 16 24 C -0.11 -1.87 7.54 22.27 0.17 -1.70 16 25 C -0.12 -1.77 10.05 22.27 0.22 -1.54 16 26 C -0.12 -2.14 10.05 22.27 0.22 -1.91 16 27 C -0.13 -3.30 10.05 22.27 0.22 -3.07 16 28 C -0.12 -3.52 9.70 22.27 0.22 -3.30 16 29 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.02 0.89 6.42 -2.39 -0.02 0.87 16 33 H 0.05 3.05 6.36 -2.38 -0.02 3.04 16 34 H 0.06 3.39 5.82 -2.39 -0.01 3.38 16 35 H 0.02 0.97 7.98 -2.39 -0.02 0.95 16 36 H 0.24 14.06 8.31 -92.70 -0.77 13.29 16 37 H 0.08 3.07 7.29 -2.38 -0.02 3.05 16 38 H 0.09 3.02 7.00 -2.39 -0.02 3.00 16 39 H 0.08 1.97 6.40 -2.39 -0.02 1.96 16 40 H 0.10 1.90 7.85 -2.39 -0.02 1.88 16 41 H 0.12 1.67 5.26 -2.38 -0.01 1.66 16 42 H 0.10 1.78 7.22 -2.39 -0.02 1.77 16 43 H 0.42 1.85 8.83 -92.70 -0.82 1.03 16 44 H 0.41 3.34 8.93 -92.71 -0.83 2.51 16 45 H 0.06 1.89 7.36 -2.39 -0.02 1.87 16 46 H 0.11 2.12 7.84 -2.39 -0.02 2.10 16 47 H 0.14 1.72 7.73 -2.91 -0.02 1.70 16 48 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 49 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 50 H 0.12 2.76 8.06 -2.91 -0.02 2.73 16 51 H 0.09 3.31 7.58 -2.91 -0.02 3.29 16 Total: -1.00 -78.09 407.01 2.65 -75.44 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -0.69 Total: 22.49 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 6.28 Total: 10.34 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -4.88 Total: -113.46 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -0.09 Total: -43.08 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.28 kcal Total: -78.09 2.65 -75.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058911509.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.706 kcal (2) G-P(sol) polarization free energy of solvation -78.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds