Wall clock time and date at job start Wed Apr 1 2020 05:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47297 * 2 1 4 4 N 1.46496 * 109.47291 * 179.97438 * 3 2 1 5 5 C 1.34788 * 120.00139 * 180.02562 * 4 3 2 6 6 O 1.21547 * 119.99524 * 359.97438 * 5 4 3 7 7 C 1.47856 * 120.00161 * 180.02562 * 5 4 3 8 8 C 1.39618 * 120.10952 * 359.97376 * 7 5 4 9 9 C 1.37984 * 120.00845 * 180.02562 * 8 7 5 10 10 C 1.38251 * 120.22083 * 359.97438 * 9 8 7 11 11 C 1.38972 * 120.22519 * 0.02562 * 10 9 8 12 12 N 1.39706 * 120.00597 * 180.02562 * 11 10 9 13 13 C 1.46496 * 120.00217 * 359.97420 * 12 11 10 14 14 C 1.50697 * 109.47748 * 179.97438 * 13 12 11 15 15 O 1.21290 * 119.99520 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00444 * 179.97438 * 14 13 12 17 17 C 1.46494 * 119.99822 * 0.02562 * 16 14 13 18 18 C 1.53002 * 109.47014 * 89.99850 * 17 16 14 19 19 C 1.46501 * 119.99731 * 179.97438 * 16 14 13 20 20 C 1.50704 * 109.46951 * 90.00488 * 19 16 14 21 21 H 1.08004 * 119.99885 * 0.02562 * 20 19 16 22 22 C 1.37870 * 120.00094 * 179.97438 * 20 19 16 23 23 N 1.31517 * 120.00303 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00161 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47045 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47360 * 120.00453 * 24 22 20 27 27 H 1.48500 * 109.47570 * 240.00988 * 24 22 20 28 28 C 1.38685 * 119.99021 * 359.97438 * 11 10 9 29 29 H 1.09002 * 109.47132 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47110 * 300.00024 * 1 2 3 31 31 H 1.08997 * 109.46848 * 60.00567 * 1 2 3 32 32 H 1.09003 * 109.47606 * 239.99981 * 2 1 3 33 33 H 1.09005 * 109.47263 * 119.99916 * 2 1 3 34 34 H 1.09004 * 109.47495 * 59.99783 * 3 2 1 35 35 H 1.09002 * 109.47146 * 299.99686 * 3 2 1 36 36 H 0.97000 * 120.00277 * 359.97438 * 4 3 2 37 37 H 1.08001 * 119.99706 * 0.04756 * 8 7 5 38 38 H 1.07990 * 119.88875 * 179.97438 * 9 8 7 39 39 H 1.08009 * 119.88245 * 180.02562 * 10 9 8 40 40 H 0.97008 * 119.99986 * 179.97438 * 12 11 10 41 41 H 1.08994 * 109.47305 * 300.00662 * 13 12 11 42 42 H 1.09008 * 109.47052 * 59.99991 * 13 12 11 43 43 H 1.09003 * 109.47146 * 209.99453 * 17 16 14 44 44 H 1.09000 * 109.47496 * 329.99681 * 17 16 14 45 45 H 1.08995 * 109.47118 * 299.99714 * 18 17 16 46 46 H 1.08996 * 109.47463 * 60.00280 * 18 17 16 47 47 H 1.09006 * 109.46775 * 180.02562 * 18 17 16 48 48 H 1.08999 * 109.47040 * 209.99808 * 19 16 14 49 49 H 1.08998 * 109.47545 * 330.00626 * 19 16 14 50 50 H 0.96997 * 120.00392 * 179.97438 * 23 22 20 51 51 H 1.08001 * 120.11286 * 179.72937 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1789 2.6097 0.0012 6 8 3.5711 3.6623 0.0008 7 6 5.6575 2.6097 0.0013 8 6 6.3579 1.4019 0.0012 9 6 7.7377 1.4044 0.0018 10 6 8.4315 2.6002 0.0019 11 6 7.7439 3.8079 0.0020 12 7 8.4496 5.0136 0.0015 13 6 9.9145 5.0050 0.0016 14 6 10.4253 6.4228 0.0004 15 8 9.6426 7.3493 0.0001 16 7 11.7518 6.6612 0.0008 17 6 12.6971 5.5421 0.0018 18 6 13.0267 5.1517 -1.4404 19 6 12.2482 8.0396 -0.0009 20 6 12.4178 8.5141 1.4194 21 1 12.1800 7.8548 2.2411 22 6 12.8775 9.7896 1.6698 23 7 13.1676 10.5924 0.6693 24 14 13.0870 10.3781 3.4303 25 1 12.6947 9.2928 4.3650 26 1 14.5072 10.7432 3.6645 27 1 12.2260 11.5658 3.6611 28 6 6.3571 3.8160 0.0014 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9900 0.6024 0.0013 37 1 5.8196 0.4656 0.0004 38 1 8.2775 0.4691 0.0022 39 1 9.5116 2.5957 0.0020 40 1 7.9695 5.8566 0.0012 41 1 10.2748 4.4893 0.8917 42 1 10.2748 4.4887 -0.8882 43 1 13.6114 5.8392 0.5157 44 1 12.2516 4.6905 0.5159 45 1 12.1126 4.8547 -1.9544 46 1 13.4724 6.0032 -1.9546 47 1 13.7298 4.3187 -1.4397 48 1 13.2090 8.0791 -0.5142 49 1 11.5343 8.6823 -0.5159 50 1 13.4906 11.4898 0.8454 51 1 5.8207 4.7534 0.0059 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088524259.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:37 Heat of formation + Delta-G solvation = -53.362777 kcal Electronic energy + Delta-G solvation = -29292.842905 eV Core-core repulsion = 25191.682142 eV Total energy + Delta-G solvation = -4101.160764 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.40633 -39.50082 -38.59247 -36.12540 -35.69782 -35.06593 -33.04045 -32.84042 -31.21141 -30.32413 -30.07251 -27.78273 -26.72326 -25.99363 -23.69797 -23.12235 -22.53382 -22.21306 -22.01640 -20.25775 -18.72650 -18.23064 -16.95845 -16.60431 -16.43683 -16.14630 -16.04398 -16.01063 -15.42201 -15.26402 -14.91706 -14.73282 -14.25361 -14.12349 -13.75446 -13.74325 -13.54397 -13.40389 -13.34049 -13.00783 -12.80919 -12.55145 -12.50959 -12.09873 -12.07431 -11.89072 -11.68376 -11.59421 -11.37105 -11.35576 -11.26800 -10.96061 -10.83828 -10.61550 -10.23585 -10.18805 -10.11691 -9.68969 -9.42072 -9.14091 -9.05127 -8.48796 -7.81318 -7.49603 -6.09672 -4.14783 0.78902 1.43369 2.78453 2.82998 3.19113 3.26865 3.28457 3.35161 3.39420 3.83511 3.90856 4.34102 4.40497 4.49104 4.51017 4.73453 4.75121 4.83533 4.94629 5.09330 5.15198 5.16125 5.16774 5.25232 5.29677 5.31010 5.38309 5.40469 5.47026 5.54697 5.54795 5.63915 5.69385 5.73117 5.78083 5.93725 6.09753 6.11978 6.14415 6.24810 6.31032 6.39792 6.57920 6.92760 7.21117 7.25416 7.35348 7.43120 7.75741 7.86057 7.99509 8.16192 8.26543 8.77779 8.93706 9.50675 10.98482 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017611 B = 0.001772 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.551179 B =15800.286927 C =16769.846049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.730 5.730 5 C 0.559 3.441 6 O -0.535 6.535 7 C -0.090 4.090 8 C -0.156 4.156 9 C -0.076 4.076 10 C -0.179 4.179 11 C 0.221 3.779 12 N -0.728 5.728 13 C 0.103 3.897 14 C 0.500 3.500 15 O -0.537 6.537 16 N -0.591 5.591 17 C 0.103 3.897 18 C -0.170 4.170 19 C 0.246 3.754 20 C -0.529 4.529 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.893 5.893 24 Si 0.898 3.102 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 C -0.135 4.135 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.401 0.599 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.414 0.586 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.050 0.950 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.034 0.966 49 H 0.044 0.956 50 H 0.263 0.737 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.958 -26.692 -3.419 30.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.006 4.006 4 N -0.383 5.383 5 C 0.347 3.653 6 O -0.412 6.412 7 C -0.094 4.094 8 C -0.177 4.177 9 C -0.095 4.095 10 C -0.203 4.203 11 C 0.116 3.884 12 N -0.359 5.359 13 C -0.025 4.025 14 C 0.285 3.715 15 O -0.414 6.414 16 N -0.322 5.322 17 C -0.021 4.021 18 C -0.229 4.229 19 C 0.127 3.873 20 C -0.567 4.567 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.532 5.532 24 Si 0.726 3.274 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.208 1.208 28 C -0.158 4.158 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.236 0.764 37 H 0.136 0.864 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.253 0.747 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.052 0.948 49 H 0.062 0.938 50 H 0.073 0.927 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.520 -25.202 -3.461 29.291 hybrid contribution 0.419 0.256 0.972 1.089 sum -14.101 -24.946 -2.489 28.763 Atomic orbital electron populations 1.21679 0.94470 1.02189 1.02447 1.21742 0.97083 0.95799 1.02780 1.21422 0.79355 0.97189 1.02661 1.45914 1.07329 1.08726 1.76298 1.18401 0.87477 0.83539 0.75910 1.90784 1.70036 1.31227 1.49133 1.19496 0.91832 0.93998 1.04024 1.20888 0.94506 0.96160 1.06137 1.20768 0.93640 0.97468 0.97606 1.20861 1.00049 0.91047 1.08308 1.17714 0.90671 0.86525 0.93526 1.44559 1.04590 1.06184 1.80596 1.21214 0.81777 0.96799 1.02715 1.20147 0.83424 0.89937 0.77987 1.90680 1.55145 1.45305 1.50303 1.48225 1.04120 1.09409 1.70494 1.21484 0.94890 0.89196 0.96523 1.22232 1.01355 1.01719 0.97553 1.19323 0.95008 0.75327 0.97625 1.21453 1.44218 0.98847 0.92222 0.92372 1.24932 0.95246 0.96384 0.97483 1.69937 1.44802 1.07817 1.30670 0.86436 0.77614 0.78847 0.84483 1.19807 1.20925 1.20839 1.20669 0.91735 0.98366 1.05073 0.92150 0.92284 0.92283 0.91243 0.91239 0.91355 0.91350 0.76385 0.86412 0.85619 0.85626 0.74683 0.89679 0.89721 0.89584 0.91653 0.93046 0.91890 0.91946 0.94769 0.93800 0.92707 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.91 37.16 0.37 -0.25 16 2 C -0.14 -0.61 6.05 -26.74 -0.16 -0.77 16 3 C 0.12 0.86 5.67 -4.05 -0.02 0.84 16 4 N -0.73 -6.03 5.51 -61.25 -0.34 -6.36 16 5 C 0.56 6.84 7.77 -12.32 -0.10 6.74 16 6 O -0.53 -8.64 16.34 5.32 0.09 -8.55 16 7 C -0.09 -1.05 5.87 -105.00 -0.62 -1.66 16 8 C -0.16 -1.37 9.54 -39.16 -0.37 -1.75 16 9 C -0.08 -0.66 10.02 -39.67 -0.40 -1.06 16 10 C -0.18 -1.89 9.31 -39.30 -0.37 -2.26 16 11 C 0.22 2.85 6.65 -83.83 -0.56 2.30 16 12 N -0.73 -10.58 5.70 -59.85 -0.34 -10.92 16 13 C 0.10 1.45 3.94 -5.20 -0.02 1.43 16 14 C 0.50 9.81 7.74 -10.99 -0.09 9.72 16 15 O -0.54 -12.92 15.25 5.55 0.08 -12.84 16 16 N -0.59 -11.76 2.46 -175.06 -0.43 -12.19 16 17 C 0.10 1.50 5.93 -4.04 -0.02 1.48 16 18 C -0.17 -2.06 10.24 37.16 0.38 -1.68 16 19 C 0.25 6.23 5.16 -5.19 -0.03 6.21 16 20 C -0.53 -14.71 9.39 -34.44 -0.32 -15.03 16 21 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 24 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 C -0.13 -1.80 9.44 -38.97 -0.37 -2.17 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.40 2.17 6.50 -40.82 -0.27 1.90 16 37 H 0.12 0.66 6.40 -52.49 -0.34 0.32 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.13 1.13 6.71 -52.48 -0.35 0.78 16 40 H 0.41 6.72 7.45 -40.82 -0.30 6.41 16 41 H 0.09 1.06 7.20 -51.93 -0.37 0.68 16 42 H 0.08 1.00 6.99 -51.92 -0.36 0.64 16 43 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 44 H 0.07 0.76 6.44 -51.93 -0.33 0.42 16 45 H 0.05 0.59 7.22 -51.93 -0.38 0.21 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 49 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 50 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 51 H 0.13 1.94 7.65 -52.49 -0.40 1.54 16 LS Contribution 421.08 15.07 6.35 6.35 Total: -1.00 -35.03 421.08 -9.76 -44.79 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -8.10 Total: 4.81 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -2.79 Total: 3.73 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.37 Total: -54.98 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: 0.17 Total: -21.39 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -35.03 -9.76 -44.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088524259.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.573 kcal (2) G-P(sol) polarization free energy of solvation -35.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds