Wall clock time and date at job start Wed Apr 1 2020 05:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47297 * 2 1 4 4 N 1.46496 * 109.47291 * 179.97438 * 3 2 1 5 5 C 1.34788 * 120.00139 * 180.02562 * 4 3 2 6 6 O 1.21547 * 119.99524 * 359.97438 * 5 4 3 7 7 C 1.47856 * 120.00161 * 180.02562 * 5 4 3 8 8 C 1.39618 * 120.10952 * 359.97376 * 7 5 4 9 9 C 1.37984 * 120.00845 * 180.02562 * 8 7 5 10 10 C 1.38251 * 120.22083 * 359.97438 * 9 8 7 11 11 C 1.38972 * 120.22519 * 0.02562 * 10 9 8 12 12 N 1.39706 * 120.00597 * 180.02562 * 11 10 9 13 13 C 1.46496 * 120.00217 * 359.97420 * 12 11 10 14 14 C 1.50697 * 109.47748 * 179.97438 * 13 12 11 15 15 O 1.21290 * 119.99520 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00444 * 179.97438 * 14 13 12 17 17 C 1.46494 * 119.99822 * 0.02562 * 16 14 13 18 18 C 1.53002 * 109.47014 * 89.99850 * 17 16 14 19 19 C 1.46501 * 119.99731 * 179.97438 * 16 14 13 20 20 C 1.50704 * 109.46951 * 90.00488 * 19 16 14 21 21 H 1.08004 * 119.99885 * 0.02562 * 20 19 16 22 22 C 1.37870 * 120.00094 * 179.97438 * 20 19 16 23 23 N 1.31517 * 120.00303 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00161 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47045 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47360 * 120.00453 * 24 22 20 27 27 H 1.48500 * 109.47570 * 240.00988 * 24 22 20 28 28 C 1.38685 * 119.99021 * 359.97438 * 11 10 9 29 29 H 1.09002 * 109.47132 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47110 * 300.00024 * 1 2 3 31 31 H 1.08997 * 109.46848 * 60.00567 * 1 2 3 32 32 H 1.09003 * 109.47606 * 239.99981 * 2 1 3 33 33 H 1.09005 * 109.47263 * 119.99916 * 2 1 3 34 34 H 1.09004 * 109.47495 * 59.99783 * 3 2 1 35 35 H 1.09002 * 109.47146 * 299.99686 * 3 2 1 36 36 H 0.97000 * 120.00277 * 359.97438 * 4 3 2 37 37 H 1.08001 * 119.99706 * 0.04756 * 8 7 5 38 38 H 1.07990 * 119.88875 * 179.97438 * 9 8 7 39 39 H 1.08009 * 119.88245 * 180.02562 * 10 9 8 40 40 H 0.97008 * 119.99986 * 179.97438 * 12 11 10 41 41 H 1.08994 * 109.47305 * 300.00662 * 13 12 11 42 42 H 1.09008 * 109.47052 * 59.99991 * 13 12 11 43 43 H 1.09003 * 109.47146 * 209.99453 * 17 16 14 44 44 H 1.09000 * 109.47496 * 329.99681 * 17 16 14 45 45 H 1.08995 * 109.47118 * 299.99714 * 18 17 16 46 46 H 1.08996 * 109.47463 * 60.00280 * 18 17 16 47 47 H 1.09006 * 109.46775 * 180.02562 * 18 17 16 48 48 H 1.08999 * 109.47040 * 209.99808 * 19 16 14 49 49 H 1.08998 * 109.47545 * 330.00626 * 19 16 14 50 50 H 0.96997 * 120.00392 * 179.97438 * 23 22 20 51 51 H 1.08001 * 120.11286 * 179.72937 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1789 2.6097 0.0012 6 8 3.5711 3.6623 0.0008 7 6 5.6575 2.6097 0.0013 8 6 6.3579 1.4019 0.0012 9 6 7.7377 1.4044 0.0018 10 6 8.4315 2.6002 0.0019 11 6 7.7439 3.8079 0.0020 12 7 8.4496 5.0136 0.0015 13 6 9.9145 5.0050 0.0016 14 6 10.4253 6.4228 0.0004 15 8 9.6426 7.3493 0.0001 16 7 11.7518 6.6612 0.0008 17 6 12.6971 5.5421 0.0018 18 6 13.0267 5.1517 -1.4404 19 6 12.2482 8.0396 -0.0009 20 6 12.4178 8.5141 1.4194 21 1 12.1800 7.8548 2.2411 22 6 12.8775 9.7896 1.6698 23 7 13.1676 10.5924 0.6693 24 14 13.0870 10.3781 3.4303 25 1 12.6947 9.2928 4.3650 26 1 14.5072 10.7432 3.6645 27 1 12.2260 11.5658 3.6611 28 6 6.3571 3.8160 0.0014 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9900 0.6024 0.0013 37 1 5.8196 0.4656 0.0004 38 1 8.2775 0.4691 0.0022 39 1 9.5116 2.5957 0.0020 40 1 7.9695 5.8566 0.0012 41 1 10.2748 4.4893 0.8917 42 1 10.2748 4.4887 -0.8882 43 1 13.6114 5.8392 0.5157 44 1 12.2516 4.6905 0.5159 45 1 12.1126 4.8547 -1.9544 46 1 13.4724 6.0032 -1.9546 47 1 13.7298 4.3187 -1.4397 48 1 13.2090 8.0791 -0.5142 49 1 11.5343 8.6823 -0.5159 50 1 13.4906 11.4898 0.8454 51 1 5.8207 4.7534 0.0059 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088524259.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:36 Heat of formation + Delta-G solvation = -77.608786 kcal Electronic energy + Delta-G solvation = -29293.894291 eV Core-core repulsion = 25191.682142 eV Total energy + Delta-G solvation = -4102.212150 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.33619 -40.89071 -39.58583 -37.15370 -36.83116 -36.21407 -34.92180 -33.65858 -32.03512 -31.71211 -31.11862 -29.34425 -27.42844 -27.31779 -24.96644 -24.40722 -23.80910 -23.10678 -22.55581 -21.15313 -20.10059 -19.20854 -18.64365 -18.04428 -17.66252 -17.30039 -16.78184 -16.77631 -16.66628 -16.57319 -16.34925 -15.71146 -15.49209 -15.03021 -14.93646 -14.69023 -14.63983 -14.52223 -14.21992 -14.11800 -13.84424 -13.62983 -13.51981 -13.30753 -13.20843 -13.04916 -12.92631 -12.70499 -12.62633 -12.47805 -12.23164 -12.18152 -12.02451 -11.90694 -11.74679 -11.71585 -11.14043 -11.07081 -10.76064 -10.67505 -10.24589 -9.84526 -9.51345 -8.44242 -8.25355 -6.40033 -0.07083 0.63365 1.34200 1.36991 1.48132 1.68772 1.88585 1.95354 2.16948 2.36318 2.62703 2.99928 3.04759 3.53235 3.71131 3.91335 4.00010 4.07540 4.07920 4.22026 4.28041 4.31790 4.35570 4.35940 4.45518 4.53631 4.63938 4.65971 4.66973 4.76017 4.87705 4.93386 4.99290 5.00207 5.05733 5.15798 5.19357 5.25172 5.27545 5.31977 5.40543 5.41848 5.47125 5.53878 5.54896 5.78098 5.84375 6.02820 6.28958 6.50425 6.58416 6.67407 6.75017 7.16483 7.22686 7.37535 8.81920 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017611 B = 0.001772 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.551179 B =15800.286927 C =16769.846049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.114 3.886 4 N -0.708 5.708 5 C 0.552 3.448 6 O -0.588 6.588 7 C -0.104 4.104 8 C -0.138 4.138 9 C -0.068 4.068 10 C -0.174 4.174 11 C 0.202 3.798 12 N -0.746 5.746 13 C 0.122 3.878 14 C 0.489 3.511 15 O -0.595 6.595 16 N -0.596 5.596 17 C 0.095 3.905 18 C -0.162 4.162 19 C 0.262 3.738 20 C -0.543 4.543 21 H 0.055 0.945 22 C 0.008 3.992 23 N -0.928 5.928 24 Si 0.967 3.033 25 H -0.267 1.267 26 H -0.268 1.268 27 H -0.284 1.284 28 C -0.164 4.164 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.418 0.582 37 H 0.158 0.842 38 H 0.169 0.831 39 H 0.150 0.850 40 H 0.399 0.601 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.075 0.925 44 H 0.108 0.892 45 H 0.061 0.939 46 H 0.036 0.964 47 H 0.099 0.901 48 H 0.026 0.974 49 H -0.005 1.005 50 H 0.267 0.733 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.960 -31.960 -2.554 34.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.010 4.010 4 N -0.361 5.361 5 C 0.341 3.659 6 O -0.470 6.470 7 C -0.108 4.108 8 C -0.158 4.158 9 C -0.086 4.086 10 C -0.197 4.197 11 C 0.099 3.901 12 N -0.377 5.377 13 C -0.005 4.005 14 C 0.277 3.723 15 O -0.477 6.477 16 N -0.326 5.326 17 C -0.027 4.027 18 C -0.220 4.220 19 C 0.140 3.860 20 C -0.582 4.582 21 H 0.073 0.927 22 C -0.191 4.191 23 N -0.567 5.567 24 Si 0.791 3.209 25 H -0.191 1.191 26 H -0.193 1.193 27 H -0.211 1.211 28 C -0.188 4.188 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.256 0.744 37 H 0.175 0.825 38 H 0.187 0.813 39 H 0.167 0.833 40 H 0.235 0.765 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.093 0.907 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.055 0.945 47 H 0.118 0.882 48 H 0.044 0.956 49 H 0.013 0.987 50 H 0.076 0.924 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.496 -30.609 -2.603 33.553 hybrid contribution 0.055 1.796 0.659 1.913 sum -13.441 -28.813 -1.944 31.853 Atomic orbital electron populations 1.21702 0.94294 1.02889 1.02086 1.21692 0.97110 0.93454 1.04032 1.21524 0.78723 0.99295 1.01430 1.45790 1.07767 1.08292 1.74283 1.18688 0.88025 0.83788 0.75440 1.90755 1.71028 1.33296 1.51918 1.19575 0.91499 0.94656 1.05078 1.21342 0.95088 0.96230 1.03189 1.21275 0.93513 0.98395 0.95401 1.21243 1.01334 0.90416 1.06743 1.17855 0.90326 0.86830 0.95083 1.44609 1.04660 1.06286 1.82102 1.21193 0.81582 0.92432 1.05313 1.21189 0.82696 0.92034 0.76378 1.90650 1.56563 1.47776 1.52668 1.48224 1.05470 1.08667 1.70277 1.21868 0.93645 0.88406 0.98770 1.22174 1.02592 1.01943 0.95340 1.18726 0.93148 0.78173 0.95911 1.21749 1.44064 0.99271 0.93102 0.92708 1.25844 0.94854 0.96557 1.01852 1.70054 1.45527 1.08241 1.32923 0.85378 0.78157 0.78084 0.79236 1.19089 1.19268 1.21058 1.20598 0.92491 0.98152 1.07543 0.90848 0.92740 0.92694 0.89893 0.89943 0.92732 0.92660 0.74352 0.82491 0.81343 0.83275 0.76468 0.86975 0.86477 0.90661 0.87441 0.91990 0.94503 0.88203 0.95649 0.98685 0.92425 0.87914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 71.98 0.71 -0.31 16 2 C -0.13 -0.83 6.05 30.59 0.19 -0.65 16 3 C 0.11 1.61 5.67 86.38 0.49 2.10 16 4 N -0.71 -10.72 5.51 -465.96 -2.57 -13.28 16 5 C 0.55 13.71 7.77 86.79 0.67 14.38 16 6 O -0.59 -20.49 16.34 -3.86 -0.06 -20.55 16 7 C -0.10 -2.36 5.87 -20.11 -0.12 -2.48 16 8 C -0.14 -1.88 9.54 22.54 0.21 -1.66 16 9 C -0.07 -0.81 10.02 22.21 0.22 -0.59 16 10 C -0.17 -2.99 9.31 22.45 0.21 -2.78 16 11 C 0.20 5.08 6.65 38.17 0.25 5.33 16 12 N -0.75 -21.90 5.70 -343.26 -1.96 -23.86 16 13 C 0.12 3.21 3.94 85.63 0.34 3.54 16 14 C 0.49 19.57 7.74 87.66 0.68 20.25 16 15 O -0.60 -30.55 15.25 -3.06 -0.05 -30.60 16 16 N -0.60 -24.04 2.46 -826.15 -2.03 -26.07 16 17 C 0.09 2.58 5.93 86.38 0.51 3.09 16 18 C -0.16 -3.53 10.24 71.98 0.74 -2.79 16 19 C 0.26 13.96 5.16 85.63 0.44 14.40 16 20 C -0.54 -31.18 9.39 25.60 0.24 -30.94 16 21 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 22 C 0.01 0.46 5.46 84.65 0.46 0.92 16 23 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 24 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 28 C -0.16 -4.60 9.44 22.67 0.21 -4.38 16 29 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 34 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.42 3.11 6.50 -92.71 -0.60 2.51 16 37 H 0.16 0.84 6.40 -2.91 -0.02 0.82 16 38 H 0.17 0.70 8.06 -2.92 -0.02 0.68 16 39 H 0.15 1.82 6.71 -2.91 -0.02 1.80 16 40 H 0.40 14.06 7.45 -92.70 -0.69 13.37 16 41 H 0.11 2.35 7.20 -2.39 -0.02 2.33 16 42 H 0.12 2.32 6.99 -2.38 -0.02 2.30 16 43 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 44 H 0.11 2.03 6.44 -2.39 -0.02 2.01 16 45 H 0.06 1.22 7.22 -2.39 -0.02 1.20 16 46 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 48 H 0.03 1.38 8.07 -2.39 -0.02 1.36 16 49 H 0.00 -0.31 7.42 -2.39 -0.02 -0.33 16 50 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 51 H 0.10 3.42 7.65 -2.91 -0.02 3.39 16 Total: -1.00 -85.35 421.08 1.77 -83.58 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -0.35 Total: 22.17 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 6.47 Total: 17.45 kcal Atomic # 7 Polarization: -112.96 SS G_CDS: -6.27 Total: -119.23 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -0.11 Total: -51.15 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -85.35 1.77 -83.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088524259.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.969 kcal (2) G-P(sol) polarization free energy of solvation -85.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds