Wall clock time and date at job start Wed Apr 1 2020 05:34:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.52998 * 109.46956 * 2 1
4 4 N 1.46507 * 109.47127 * 180.02562 * 3 2 1
5 5 C 1.37096 * 120.00060 * 264.54121 * 4 3 2
6 6 H 1.07994 * 120.00392 * 146.01268 * 5 4 3
7 7 C 1.38951 * 119.99708 * 326.01513 * 5 4 3
8 8 N 1.31414 * 120.00245 * 337.80012 * 7 5 4
9 9 Si 1.86801 * 120.00112 * 157.80581 * 7 5 4
10 10 H 1.48504 * 109.46868 * 89.99740 * 9 7 5
11 11 H 1.48504 * 109.47293 * 209.99652 * 9 7 5
12 12 H 1.48497 * 109.46939 * 330.00087 * 9 7 5
13 13 C 1.34774 * 119.99955 * 84.54069 * 4 3 2
14 14 O 1.21288 * 120.00389 * 359.97438 * 13 4 3
15 15 C 1.50706 * 119.99901 * 180.02562 * 13 4 3
16 16 C 1.52996 * 109.47142 * 179.97438 * 15 13 4
17 17 N 1.46504 * 109.46957 * 180.02562 * 16 15 13
18 18 C 1.34774 * 119.99717 * 180.02562 * 17 16 15
19 19 O 1.21584 * 120.00261 * 359.97438 * 18 17 16
20 20 N 1.34778 * 120.00014 * 179.97438 * 18 17 16
21 21 C 1.46500 * 119.99582 * 0.02562 * 20 18 17
22 22 C 1.46496 * 120.00179 * 179.97438 * 20 18 17
23 23 C 1.50697 * 109.47653 * 270.00230 * 22 20 18
24 24 C 1.38240 * 119.99998 * 269.73050 * 23 22 20
25 25 C 1.38233 * 119.99673 * 179.76335 * 24 23 22
26 26 C 1.38230 * 120.00472 * 0.50364 * 25 24 23
27 27 C 1.38238 * 120.00005 * 359.74826 * 26 25 24
28 28 C 1.38237 * 120.00023 * 89.99644 * 23 22 20
29 29 H 1.09001 * 109.47317 * 179.97438 * 1 2 3
30 30 H 1.08997 * 109.47183 * 299.99669 * 1 2 3
31 31 H 1.09003 * 109.47410 * 60.00103 * 1 2 3
32 32 H 1.09007 * 109.47084 * 240.00177 * 2 1 3
33 33 H 1.09003 * 109.47410 * 119.99897 * 2 1 3
34 34 H 1.08993 * 109.47538 * 60.00490 * 3 2 1
35 35 H 1.08997 * 109.47225 * 299.99787 * 3 2 1
36 36 H 0.96998 * 120.00448 * 180.02562 * 8 7 5
37 37 H 1.09006 * 109.46919 * 59.99533 * 15 13 4
38 38 H 1.08999 * 109.46890 * 299.99908 * 15 13 4
39 39 H 1.08998 * 109.47280 * 59.99790 * 16 15 13
40 40 H 1.09003 * 109.46817 * 299.99610 * 16 15 13
41 41 H 0.96991 * 120.00337 * 359.97438 * 17 16 15
42 42 H 1.08998 * 109.46766 * 269.99368 * 21 20 18
43 43 H 1.09001 * 109.47112 * 149.99842 * 21 20 18
44 44 H 1.08994 * 109.47421 * 29.99444 * 21 20 18
45 45 H 1.09006 * 109.47186 * 30.00540 * 22 20 18
46 46 H 1.09005 * 109.47005 * 150.00166 * 22 20 18
47 47 H 1.08002 * 119.99882 * 359.97438 * 24 23 22
48 48 H 1.08002 * 120.00099 * 180.23055 * 25 24 23
49 49 H 1.07996 * 120.00563 * 179.72196 * 26 25 24
50 50 H 1.08000 * 120.00426 * 179.97438 * 27 26 25
51 51 H 1.07996 * 119.99901 * 0.02562 * 28 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 7 3.5049 1.4425 -0.0006
5 6 4.1909 1.5553 1.1810
6 1 5.1326 1.0425 1.3098
7 6 3.6746 2.3295 2.2129
8 7 2.8036 3.2779 1.9504
9 14 4.2185 2.0222 3.9733
10 1 5.4090 2.8566 4.2763
11 1 3.1153 2.3781 4.9016
12 1 4.5636 0.5877 4.1415
13 6 4.1783 1.3317 -1.1628
14 8 3.5715 1.2314 -2.2082
15 6 5.6854 1.3312 -1.1634
16 6 6.1948 1.1936 -2.5995
17 7 7.6598 1.1925 -2.5999
18 6 8.3332 1.0815 -3.7621
19 8 7.7249 0.9819 -4.8101
20 7 9.6810 1.0810 -3.7626
21 6 10.4139 1.2005 -2.4998
22 6 10.4130 0.9598 -5.0258
23 6 10.6635 -0.4960 -5.3237
24 6 11.8180 -1.1057 -4.8696
25 6 12.0455 -2.4424 -5.1387
26 6 11.1234 -3.1667 -5.8707
27 6 9.9713 -2.5557 -6.3293
28 6 9.7413 -1.2203 -6.0558
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8900
32 1 1.8933 -0.5138 -0.8901
33 1 1.8933 -0.5138 0.8900
34 1 1.6767 1.9563 0.8899
35 1 1.6766 1.9563 -0.8900
36 1 2.4434 3.8186 2.6707
37 1 6.0486 0.4937 -0.5675
38 1 6.0492 2.2657 -0.7363
39 1 5.8315 2.0307 -3.1956
40 1 5.8310 0.2588 -3.0260
41 1 8.1452 1.2724 -1.7640
42 1 10.5961 2.2532 -2.2837
43 1 11.3661 0.6763 -2.5813
44 1 9.8250 0.7610 -1.6948
45 1 9.8238 1.3993 -5.8308
46 1 11.3657 1.4834 -4.9453
47 1 12.5407 -0.5386 -4.3017
48 1 12.9457 -2.9198 -4.7808
49 1 11.3032 -4.2099 -6.0848
50 1 9.2510 -3.1215 -6.9016
51 1 8.8416 -0.7428 -6.4145
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000104043165.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:34:41
Heat of formation + Delta-G solvation = -38.343195 kcal
Electronic energy + Delta-G solvation = -30184.445546 eV
Core-core repulsion = 26083.936080 eV
Total energy + Delta-G solvation = -4100.509466 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-40.30281 -39.11207 -38.61388 -35.82081 -35.29798 -34.62412 -32.86184 -32.03664
-31.35400 -31.02591 -29.89490 -27.50182 -26.24275 -25.60800 -24.61280 -22.71803
-22.67826 -21.53154 -20.62238 -19.96110 -19.06893 -18.06848 -17.06284 -16.69982
-16.42815 -15.93560 -15.78199 -15.24821 -15.16488 -14.79295 -14.58907 -14.35067
-14.15030 -13.82743 -13.63954 -13.50930 -13.48054 -13.07095 -12.89511 -12.79101
-12.66134 -12.52723 -12.24172 -11.96689 -11.67009 -11.43820 -11.38572 -11.33659
-11.09992 -11.09654 -10.97518 -10.77186 -10.65417 -10.40591 -10.26527 -10.03876
-9.74495 -9.12738 -9.05652 -9.00148 -8.91170 -8.52736 -8.46269 -7.56825
-6.44016 -4.10485 1.12507 1.27613 2.72680 3.04520 3.16198 3.19462
3.33595 3.68661 3.86132 4.00578 4.08036 4.62588 4.65451 4.78454
4.85234 4.87673 4.94361 4.97641 5.05761 5.25788 5.33513 5.42343
5.50231 5.51826 5.57888 5.73252 5.80003 5.83908 5.84948 5.92534
5.96391 6.12477 6.28352 6.30016 6.33297 6.39098 6.49712 6.51007
6.51856 6.55199 6.57684 6.69887 6.77014 6.83643 6.86778 6.97851
7.12097 7.31707 7.46572 7.87819 8.04270 8.31753 8.72574 9.01707
9.47700 9.91634 10.57114
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013524 B = 0.002193 C = 0.002050
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2069.956560 B =12767.146062 C =13655.862761
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.135 4.135
3 C 0.115 3.885
4 N -0.437 5.437
5 C -0.342 4.342
6 H 0.090 0.910
7 C 0.044 3.956
8 N -0.855 5.855
9 Si 0.912 3.088
10 H -0.277 1.277
11 H -0.281 1.281
12 H -0.269 1.269
13 C 0.471 3.529
14 O -0.603 6.603
15 C -0.130 4.130
16 C 0.154 3.846
17 N -0.743 5.743
18 C 0.705 3.295
19 O -0.586 6.586
20 N -0.633 5.633
21 C 0.079 3.921
22 C 0.173 3.827
23 C -0.107 4.107
24 C -0.109 4.109
25 C -0.128 4.128
26 C -0.119 4.119
27 C -0.124 4.124
28 C -0.091 4.091
29 H 0.044 0.956
30 H 0.051 0.949
31 H 0.050 0.950
32 H 0.053 0.947
33 H 0.057 0.943
34 H 0.107 0.893
35 H 0.051 0.949
36 H 0.270 0.730
37 H 0.082 0.918
38 H 0.091 0.909
39 H 0.071 0.929
40 H 0.068 0.932
41 H 0.394 0.606
42 H 0.057 0.943
43 H 0.071 0.929
44 H 0.068 0.932
45 H 0.093 0.907
46 H 0.083 0.917
47 H 0.118 0.882
48 H 0.119 0.881
49 H 0.119 0.881
50 H 0.121 0.879
51 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.041 -6.610 -6.695 19.465
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.173 4.173
3 C -0.009 4.009
4 N -0.155 5.155
5 C -0.470 4.470
6 H 0.107 0.893
7 C -0.163 4.163
8 N -0.491 5.491
9 Si 0.738 3.262
10 H -0.203 1.203
11 H -0.207 1.207
12 H -0.193 1.193
13 C 0.259 3.741
14 O -0.490 6.490
15 C -0.171 4.171
16 C 0.030 3.970
17 N -0.398 5.398
18 C 0.406 3.594
19 O -0.463 6.463
20 N -0.370 5.370
21 C -0.064 4.064
22 C 0.050 3.950
23 C -0.108 4.108
24 C -0.127 4.127
25 C -0.146 4.146
26 C -0.138 4.138
27 C -0.142 4.142
28 C -0.110 4.110
29 H 0.063 0.937
30 H 0.070 0.930
31 H 0.069 0.931
32 H 0.072 0.928
33 H 0.075 0.925
34 H 0.124 0.876
35 H 0.070 0.930
36 H 0.080 0.920
37 H 0.100 0.900
38 H 0.109 0.891
39 H 0.089 0.911
40 H 0.087 0.913
41 H 0.229 0.771
42 H 0.075 0.925
43 H 0.090 0.910
44 H 0.086 0.914
45 H 0.112 0.888
46 H 0.101 0.899
47 H 0.136 0.864
48 H 0.137 0.863
49 H 0.137 0.863
50 H 0.139 0.861
51 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 16.116 -6.540 -7.828 19.073
hybrid contribution 0.573 -0.153 1.689 1.790
sum 16.689 -6.692 -6.139 19.000
Atomic orbital electron populations
1.21652 0.96599 1.00423 1.01390 1.21835 0.94730 0.99491 1.01269
1.21449 0.81322 0.94506 1.03588 1.43477 1.04860 1.62217 1.04897
1.19398 1.07493 1.29415 0.90647 0.89267 1.25326 0.96999 0.93544
1.00400 1.69946 1.29907 1.16066 1.33217 0.86194 0.78466 0.79092
0.82480 1.20251 1.20683 1.19337 1.20066 0.88718 0.81476 0.83838
1.90559 1.70324 1.56385 1.31719 1.21499 0.95796 1.03976 0.95789
1.20978 0.75945 1.03128 0.96899 1.45392 1.08121 1.78850 1.07486
1.15852 0.81099 0.77918 0.84484 1.90900 1.67151 1.57590 1.30678
1.47029 1.04261 1.78405 1.07331 1.21725 0.97428 1.01586 0.85696
1.20178 0.96597 0.91791 0.86428 1.20324 0.94870 0.97043 0.98611
1.21024 0.97021 0.94993 0.99706 1.21091 0.99513 0.94455 0.99534
1.21168 0.94575 0.99741 0.98286 1.21220 0.97473 0.95149 1.00365
1.21305 0.98738 0.94106 0.96803 0.93653 0.93030 0.93106 0.92825
0.92469 0.87568 0.93010 0.91955 0.89996 0.89058 0.91093 0.91315
0.77112 0.92459 0.91042 0.91359 0.88838 0.89867 0.86362 0.86287
0.86327 0.86111 0.85143
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.44 9.91 37.15 0.37 -2.07 16
2 C -0.13 -2.78 6.22 -26.74 -0.17 -2.94 16
3 C 0.11 2.74 4.90 -4.04 -0.02 2.72 16
4 N -0.44 -10.76 2.56 -114.81 -0.29 -11.05 16
5 C -0.34 -8.28 8.70 -14.93 -0.13 -8.41 16
6 H 0.09 2.02 6.97 -52.49 -0.37 1.65 16
7 C 0.04 1.06 4.92 -17.47 -0.09 0.97 16
8 N -0.86 -21.91 11.34 55.50 0.63 -21.28 16
9 Si 0.91 18.57 29.61 -169.99 -5.03 13.54 16
10 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16
11 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16
12 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16
13 C 0.47 11.23 7.60 -10.98 -0.08 11.15 16
14 O -0.60 -15.91 15.65 5.55 0.09 -15.82 16
15 C -0.13 -2.45 4.47 -27.88 -0.12 -2.58 16
16 C 0.15 2.81 4.96 -4.04 -0.02 2.79 16
17 N -0.74 -10.98 5.42 -65.23 -0.35 -11.33 16
18 C 0.71 11.01 8.28 -86.92 -0.72 10.29 16
19 O -0.59 -11.31 15.45 5.29 0.08 -11.23 16
20 N -0.63 -7.30 2.86 -188.75 -0.54 -7.84 16
21 C 0.08 0.62 10.20 59.85 0.61 1.23 16
22 C 0.17 1.78 5.53 -5.20 -0.03 1.75 16
23 C -0.11 -1.15 5.46 -104.62 -0.57 -1.72 16
24 C -0.11 -0.99 9.70 -39.58 -0.38 -1.37 16
25 C -0.13 -1.13 10.05 -39.59 -0.40 -1.53 16
26 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16
27 C -0.12 -1.33 10.05 -39.58 -0.40 -1.72 16
28 C -0.09 -1.10 9.70 -39.58 -0.38 -1.49 16
29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16
30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16
31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16
32 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16
33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
34 H 0.11 2.66 5.35 -51.93 -0.28 2.38 16
35 H 0.05 1.29 7.59 -51.93 -0.39 0.90 16
36 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16
37 H 0.08 1.41 7.65 -51.93 -0.40 1.01 16
38 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16
39 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16
40 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16
41 H 0.39 4.67 6.20 -40.82 -0.25 4.42 16
42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
43 H 0.07 0.43 8.07 -51.93 -0.42 0.02 16
44 H 0.07 0.52 6.36 -51.93 -0.33 0.19 16
45 H 0.09 1.10 7.36 -51.93 -0.38 0.71 16
46 H 0.08 0.61 8.01 -51.93 -0.42 0.19 16
47 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16
48 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16
49 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16
50 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16
51 H 0.13 1.77 7.58 -52.49 -0.40 1.37 16
LS Contribution 419.75 15.07 6.33 6.33
Total: -1.00 -31.73 419.75 -10.29 -42.02
By element:
Atomic # 1 Polarization: 19.38 SS G_CDS: -8.26 Total: 11.12 kcal
Atomic # 6 Polarization: 8.48 SS G_CDS: -2.93 Total: 5.55 kcal
Atomic # 7 Polarization: -50.94 SS G_CDS: -0.56 Total: -51.50 kcal
Atomic # 8 Polarization: -27.21 SS G_CDS: 0.17 Total: -27.05 kcal
Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal
Total LS contribution 6.33 Total: 6.33 kcal
Total: -31.73 -10.29 -42.02 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000104043165.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.677 kcal
(2) G-P(sol) polarization free energy of solvation -31.733 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.056 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.343 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds