Wall clock time and date at job start Wed Apr 1 2020 05:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.46956 * 2 1 4 4 N 1.46507 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.37096 * 120.00060 * 264.54121 * 4 3 2 6 6 H 1.07994 * 120.00392 * 146.01268 * 5 4 3 7 7 C 1.38951 * 119.99708 * 326.01513 * 5 4 3 8 8 N 1.31414 * 120.00245 * 337.80012 * 7 5 4 9 9 Si 1.86801 * 120.00112 * 157.80581 * 7 5 4 10 10 H 1.48504 * 109.46868 * 89.99740 * 9 7 5 11 11 H 1.48504 * 109.47293 * 209.99652 * 9 7 5 12 12 H 1.48497 * 109.46939 * 330.00087 * 9 7 5 13 13 C 1.34774 * 119.99955 * 84.54069 * 4 3 2 14 14 O 1.21288 * 120.00389 * 359.97438 * 13 4 3 15 15 C 1.50706 * 119.99901 * 180.02562 * 13 4 3 16 16 C 1.52996 * 109.47142 * 179.97438 * 15 13 4 17 17 N 1.46504 * 109.46957 * 180.02562 * 16 15 13 18 18 C 1.34774 * 119.99717 * 180.02562 * 17 16 15 19 19 O 1.21584 * 120.00261 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00014 * 179.97438 * 18 17 16 21 21 C 1.46500 * 119.99582 * 0.02562 * 20 18 17 22 22 C 1.46496 * 120.00179 * 179.97438 * 20 18 17 23 23 C 1.50697 * 109.47653 * 270.00230 * 22 20 18 24 24 C 1.38240 * 119.99998 * 269.73050 * 23 22 20 25 25 C 1.38233 * 119.99673 * 179.76335 * 24 23 22 26 26 C 1.38230 * 120.00472 * 0.50364 * 25 24 23 27 27 C 1.38238 * 120.00005 * 359.74826 * 26 25 24 28 28 C 1.38237 * 120.00023 * 89.99644 * 23 22 20 29 29 H 1.09001 * 109.47317 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47183 * 299.99669 * 1 2 3 31 31 H 1.09003 * 109.47410 * 60.00103 * 1 2 3 32 32 H 1.09007 * 109.47084 * 240.00177 * 2 1 3 33 33 H 1.09003 * 109.47410 * 119.99897 * 2 1 3 34 34 H 1.08993 * 109.47538 * 60.00490 * 3 2 1 35 35 H 1.08997 * 109.47225 * 299.99787 * 3 2 1 36 36 H 0.96998 * 120.00448 * 180.02562 * 8 7 5 37 37 H 1.09006 * 109.46919 * 59.99533 * 15 13 4 38 38 H 1.08999 * 109.46890 * 299.99908 * 15 13 4 39 39 H 1.08998 * 109.47280 * 59.99790 * 16 15 13 40 40 H 1.09003 * 109.46817 * 299.99610 * 16 15 13 41 41 H 0.96991 * 120.00337 * 359.97438 * 17 16 15 42 42 H 1.08998 * 109.46766 * 269.99368 * 21 20 18 43 43 H 1.09001 * 109.47112 * 149.99842 * 21 20 18 44 44 H 1.08994 * 109.47421 * 29.99444 * 21 20 18 45 45 H 1.09006 * 109.47186 * 30.00540 * 22 20 18 46 46 H 1.09005 * 109.47005 * 150.00166 * 22 20 18 47 47 H 1.08002 * 119.99882 * 359.97438 * 24 23 22 48 48 H 1.08002 * 120.00099 * 180.23055 * 25 24 23 49 49 H 1.07996 * 120.00563 * 179.72196 * 26 25 24 50 50 H 1.08000 * 120.00426 * 179.97438 * 27 26 25 51 51 H 1.07996 * 119.99901 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1909 1.5553 1.1810 6 1 5.1326 1.0425 1.3098 7 6 3.6746 2.3295 2.2129 8 7 2.8036 3.2779 1.9504 9 14 4.2185 2.0222 3.9733 10 1 5.4090 2.8566 4.2763 11 1 3.1153 2.3781 4.9016 12 1 4.5636 0.5877 4.1415 13 6 4.1783 1.3317 -1.1628 14 8 3.5715 1.2314 -2.2082 15 6 5.6854 1.3312 -1.1634 16 6 6.1948 1.1936 -2.5995 17 7 7.6598 1.1925 -2.5999 18 6 8.3332 1.0815 -3.7621 19 8 7.7249 0.9819 -4.8101 20 7 9.6810 1.0810 -3.7626 21 6 10.4139 1.2005 -2.4998 22 6 10.4130 0.9598 -5.0258 23 6 10.6635 -0.4960 -5.3237 24 6 11.8180 -1.1057 -4.8696 25 6 12.0455 -2.4424 -5.1387 26 6 11.1234 -3.1667 -5.8707 27 6 9.9713 -2.5557 -6.3293 28 6 9.7413 -1.2203 -6.0558 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 2.4434 3.8186 2.6707 37 1 6.0486 0.4937 -0.5675 38 1 6.0492 2.2657 -0.7363 39 1 5.8315 2.0307 -3.1956 40 1 5.8310 0.2588 -3.0260 41 1 8.1452 1.2724 -1.7640 42 1 10.5961 2.2532 -2.2837 43 1 11.3661 0.6763 -2.5813 44 1 9.8250 0.7610 -1.6948 45 1 9.8238 1.3993 -5.8308 46 1 11.3657 1.4834 -4.9453 47 1 12.5407 -0.5386 -4.3017 48 1 12.9457 -2.9198 -4.7808 49 1 11.3032 -4.2099 -6.0848 50 1 9.2510 -3.1215 -6.9016 51 1 8.8416 -0.7428 -6.4145 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104043165.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:41 Heat of formation + Delta-G solvation = -38.343195 kcal Electronic energy + Delta-G solvation = -30184.445546 eV Core-core repulsion = 26083.936080 eV Total energy + Delta-G solvation = -4100.509466 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.30281 -39.11207 -38.61388 -35.82081 -35.29798 -34.62412 -32.86184 -32.03664 -31.35400 -31.02591 -29.89490 -27.50182 -26.24275 -25.60800 -24.61280 -22.71803 -22.67826 -21.53154 -20.62238 -19.96110 -19.06893 -18.06848 -17.06284 -16.69982 -16.42815 -15.93560 -15.78199 -15.24821 -15.16488 -14.79295 -14.58907 -14.35067 -14.15030 -13.82743 -13.63954 -13.50930 -13.48054 -13.07095 -12.89511 -12.79101 -12.66134 -12.52723 -12.24172 -11.96689 -11.67009 -11.43820 -11.38572 -11.33659 -11.09992 -11.09654 -10.97518 -10.77186 -10.65417 -10.40591 -10.26527 -10.03876 -9.74495 -9.12738 -9.05652 -9.00148 -8.91170 -8.52736 -8.46269 -7.56825 -6.44016 -4.10485 1.12507 1.27613 2.72680 3.04520 3.16198 3.19462 3.33595 3.68661 3.86132 4.00578 4.08036 4.62588 4.65451 4.78454 4.85234 4.87673 4.94361 4.97641 5.05761 5.25788 5.33513 5.42343 5.50231 5.51826 5.57888 5.73252 5.80003 5.83908 5.84948 5.92534 5.96391 6.12477 6.28352 6.30016 6.33297 6.39098 6.49712 6.51007 6.51856 6.55199 6.57684 6.69887 6.77014 6.83643 6.86778 6.97851 7.12097 7.31707 7.46572 7.87819 8.04270 8.31753 8.72574 9.01707 9.47700 9.91634 10.57114 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013524 B = 0.002193 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.956560 B =12767.146062 C =13655.862761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.115 3.885 4 N -0.437 5.437 5 C -0.342 4.342 6 H 0.090 0.910 7 C 0.044 3.956 8 N -0.855 5.855 9 Si 0.912 3.088 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.269 1.269 13 C 0.471 3.529 14 O -0.603 6.603 15 C -0.130 4.130 16 C 0.154 3.846 17 N -0.743 5.743 18 C 0.705 3.295 19 O -0.586 6.586 20 N -0.633 5.633 21 C 0.079 3.921 22 C 0.173 3.827 23 C -0.107 4.107 24 C -0.109 4.109 25 C -0.128 4.128 26 C -0.119 4.119 27 C -0.124 4.124 28 C -0.091 4.091 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.107 0.893 35 H 0.051 0.949 36 H 0.270 0.730 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.394 0.606 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.041 -6.610 -6.695 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.009 4.009 4 N -0.155 5.155 5 C -0.470 4.470 6 H 0.107 0.893 7 C -0.163 4.163 8 N -0.491 5.491 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.193 1.193 13 C 0.259 3.741 14 O -0.490 6.490 15 C -0.171 4.171 16 C 0.030 3.970 17 N -0.398 5.398 18 C 0.406 3.594 19 O -0.463 6.463 20 N -0.370 5.370 21 C -0.064 4.064 22 C 0.050 3.950 23 C -0.108 4.108 24 C -0.127 4.127 25 C -0.146 4.146 26 C -0.138 4.138 27 C -0.142 4.142 28 C -0.110 4.110 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.124 0.876 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.229 0.771 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.112 0.888 46 H 0.101 0.899 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 16.116 -6.540 -7.828 19.073 hybrid contribution 0.573 -0.153 1.689 1.790 sum 16.689 -6.692 -6.139 19.000 Atomic orbital electron populations 1.21652 0.96599 1.00423 1.01390 1.21835 0.94730 0.99491 1.01269 1.21449 0.81322 0.94506 1.03588 1.43477 1.04860 1.62217 1.04897 1.19398 1.07493 1.29415 0.90647 0.89267 1.25326 0.96999 0.93544 1.00400 1.69946 1.29907 1.16066 1.33217 0.86194 0.78466 0.79092 0.82480 1.20251 1.20683 1.19337 1.20066 0.88718 0.81476 0.83838 1.90559 1.70324 1.56385 1.31719 1.21499 0.95796 1.03976 0.95789 1.20978 0.75945 1.03128 0.96899 1.45392 1.08121 1.78850 1.07486 1.15852 0.81099 0.77918 0.84484 1.90900 1.67151 1.57590 1.30678 1.47029 1.04261 1.78405 1.07331 1.21725 0.97428 1.01586 0.85696 1.20178 0.96597 0.91791 0.86428 1.20324 0.94870 0.97043 0.98611 1.21024 0.97021 0.94993 0.99706 1.21091 0.99513 0.94455 0.99534 1.21168 0.94575 0.99741 0.98286 1.21220 0.97473 0.95149 1.00365 1.21305 0.98738 0.94106 0.96803 0.93653 0.93030 0.93106 0.92825 0.92469 0.87568 0.93010 0.91955 0.89996 0.89058 0.91093 0.91315 0.77112 0.92459 0.91042 0.91359 0.88838 0.89867 0.86362 0.86287 0.86327 0.86111 0.85143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.91 37.15 0.37 -2.07 16 2 C -0.13 -2.78 6.22 -26.74 -0.17 -2.94 16 3 C 0.11 2.74 4.90 -4.04 -0.02 2.72 16 4 N -0.44 -10.76 2.56 -114.81 -0.29 -11.05 16 5 C -0.34 -8.28 8.70 -14.93 -0.13 -8.41 16 6 H 0.09 2.02 6.97 -52.49 -0.37 1.65 16 7 C 0.04 1.06 4.92 -17.47 -0.09 0.97 16 8 N -0.86 -21.91 11.34 55.50 0.63 -21.28 16 9 Si 0.91 18.57 29.61 -169.99 -5.03 13.54 16 10 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 11 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 12 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 13 C 0.47 11.23 7.60 -10.98 -0.08 11.15 16 14 O -0.60 -15.91 15.65 5.55 0.09 -15.82 16 15 C -0.13 -2.45 4.47 -27.88 -0.12 -2.58 16 16 C 0.15 2.81 4.96 -4.04 -0.02 2.79 16 17 N -0.74 -10.98 5.42 -65.23 -0.35 -11.33 16 18 C 0.71 11.01 8.28 -86.92 -0.72 10.29 16 19 O -0.59 -11.31 15.45 5.29 0.08 -11.23 16 20 N -0.63 -7.30 2.86 -188.75 -0.54 -7.84 16 21 C 0.08 0.62 10.20 59.85 0.61 1.23 16 22 C 0.17 1.78 5.53 -5.20 -0.03 1.75 16 23 C -0.11 -1.15 5.46 -104.62 -0.57 -1.72 16 24 C -0.11 -0.99 9.70 -39.58 -0.38 -1.37 16 25 C -0.13 -1.13 10.05 -39.59 -0.40 -1.53 16 26 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 27 C -0.12 -1.33 10.05 -39.58 -0.40 -1.72 16 28 C -0.09 -1.10 9.70 -39.58 -0.38 -1.49 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.11 2.66 5.35 -51.93 -0.28 2.38 16 35 H 0.05 1.29 7.59 -51.93 -0.39 0.90 16 36 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 37 H 0.08 1.41 7.65 -51.93 -0.40 1.01 16 38 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16 39 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 40 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 41 H 0.39 4.67 6.20 -40.82 -0.25 4.42 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.43 8.07 -51.93 -0.42 0.02 16 44 H 0.07 0.52 6.36 -51.93 -0.33 0.19 16 45 H 0.09 1.10 7.36 -51.93 -0.38 0.71 16 46 H 0.08 0.61 8.01 -51.93 -0.42 0.19 16 47 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 48 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 49 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 50 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 51 H 0.13 1.77 7.58 -52.49 -0.40 1.37 16 LS Contribution 419.75 15.07 6.33 6.33 Total: -1.00 -31.73 419.75 -10.29 -42.02 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -8.26 Total: 11.12 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -2.93 Total: 5.55 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.56 Total: -51.50 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: 0.17 Total: -27.05 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -31.73 -10.29 -42.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104043165.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.677 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds