Wall clock time and date at job start Wed Apr 1 2020 05:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.46956 * 2 1 4 4 N 1.46507 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.37096 * 120.00060 * 264.54121 * 4 3 2 6 6 H 1.07994 * 120.00392 * 146.01268 * 5 4 3 7 7 C 1.38951 * 119.99708 * 326.01513 * 5 4 3 8 8 N 1.31414 * 120.00245 * 337.80012 * 7 5 4 9 9 Si 1.86801 * 120.00112 * 157.80581 * 7 5 4 10 10 H 1.48504 * 109.46868 * 89.99740 * 9 7 5 11 11 H 1.48504 * 109.47293 * 209.99652 * 9 7 5 12 12 H 1.48497 * 109.46939 * 330.00087 * 9 7 5 13 13 C 1.34774 * 119.99955 * 84.54069 * 4 3 2 14 14 O 1.21288 * 120.00389 * 359.97438 * 13 4 3 15 15 C 1.50706 * 119.99901 * 180.02562 * 13 4 3 16 16 C 1.52996 * 109.47142 * 179.97438 * 15 13 4 17 17 N 1.46504 * 109.46957 * 180.02562 * 16 15 13 18 18 C 1.34774 * 119.99717 * 180.02562 * 17 16 15 19 19 O 1.21584 * 120.00261 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00014 * 179.97438 * 18 17 16 21 21 C 1.46500 * 119.99582 * 0.02562 * 20 18 17 22 22 C 1.46496 * 120.00179 * 179.97438 * 20 18 17 23 23 C 1.50697 * 109.47653 * 270.00230 * 22 20 18 24 24 C 1.38240 * 119.99998 * 269.73050 * 23 22 20 25 25 C 1.38233 * 119.99673 * 179.76335 * 24 23 22 26 26 C 1.38230 * 120.00472 * 0.50364 * 25 24 23 27 27 C 1.38238 * 120.00005 * 359.74826 * 26 25 24 28 28 C 1.38237 * 120.00023 * 89.99644 * 23 22 20 29 29 H 1.09001 * 109.47317 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47183 * 299.99669 * 1 2 3 31 31 H 1.09003 * 109.47410 * 60.00103 * 1 2 3 32 32 H 1.09007 * 109.47084 * 240.00177 * 2 1 3 33 33 H 1.09003 * 109.47410 * 119.99897 * 2 1 3 34 34 H 1.08993 * 109.47538 * 60.00490 * 3 2 1 35 35 H 1.08997 * 109.47225 * 299.99787 * 3 2 1 36 36 H 0.96998 * 120.00448 * 180.02562 * 8 7 5 37 37 H 1.09006 * 109.46919 * 59.99533 * 15 13 4 38 38 H 1.08999 * 109.46890 * 299.99908 * 15 13 4 39 39 H 1.08998 * 109.47280 * 59.99790 * 16 15 13 40 40 H 1.09003 * 109.46817 * 299.99610 * 16 15 13 41 41 H 0.96991 * 120.00337 * 359.97438 * 17 16 15 42 42 H 1.08998 * 109.46766 * 269.99368 * 21 20 18 43 43 H 1.09001 * 109.47112 * 149.99842 * 21 20 18 44 44 H 1.08994 * 109.47421 * 29.99444 * 21 20 18 45 45 H 1.09006 * 109.47186 * 30.00540 * 22 20 18 46 46 H 1.09005 * 109.47005 * 150.00166 * 22 20 18 47 47 H 1.08002 * 119.99882 * 359.97438 * 24 23 22 48 48 H 1.08002 * 120.00099 * 180.23055 * 25 24 23 49 49 H 1.07996 * 120.00563 * 179.72196 * 26 25 24 50 50 H 1.08000 * 120.00426 * 179.97438 * 27 26 25 51 51 H 1.07996 * 119.99901 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1909 1.5553 1.1810 6 1 5.1326 1.0425 1.3098 7 6 3.6746 2.3295 2.2129 8 7 2.8036 3.2779 1.9504 9 14 4.2185 2.0222 3.9733 10 1 5.4090 2.8566 4.2763 11 1 3.1153 2.3781 4.9016 12 1 4.5636 0.5877 4.1415 13 6 4.1783 1.3317 -1.1628 14 8 3.5715 1.2314 -2.2082 15 6 5.6854 1.3312 -1.1634 16 6 6.1948 1.1936 -2.5995 17 7 7.6598 1.1925 -2.5999 18 6 8.3332 1.0815 -3.7621 19 8 7.7249 0.9819 -4.8101 20 7 9.6810 1.0810 -3.7626 21 6 10.4139 1.2005 -2.4998 22 6 10.4130 0.9598 -5.0258 23 6 10.6635 -0.4960 -5.3237 24 6 11.8180 -1.1057 -4.8696 25 6 12.0455 -2.4424 -5.1387 26 6 11.1234 -3.1667 -5.8707 27 6 9.9713 -2.5557 -6.3293 28 6 9.7413 -1.2203 -6.0558 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 2.4434 3.8186 2.6707 37 1 6.0486 0.4937 -0.5675 38 1 6.0492 2.2657 -0.7363 39 1 5.8315 2.0307 -3.1956 40 1 5.8310 0.2588 -3.0260 41 1 8.1452 1.2724 -1.7640 42 1 10.5961 2.2532 -2.2837 43 1 11.3661 0.6763 -2.5813 44 1 9.8250 0.7610 -1.6948 45 1 9.8238 1.3993 -5.8308 46 1 11.3657 1.4834 -4.9453 47 1 12.5407 -0.5386 -4.3017 48 1 12.9457 -2.9198 -4.7808 49 1 11.3032 -4.2099 -6.0848 50 1 9.2510 -3.1215 -6.9016 51 1 8.8416 -0.7428 -6.4145 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104043165.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:40 Heat of formation + Delta-G solvation = -55.951016 kcal Electronic energy + Delta-G solvation = -30185.209078 eV Core-core repulsion = 26083.936080 eV Total energy + Delta-G solvation = -4101.272998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.40498 -40.54212 -39.88406 -37.24635 -36.66467 -36.12863 -34.55699 -33.29494 -32.87141 -31.76836 -31.27499 -28.23634 -27.77493 -26.98607 -26.17903 -24.15801 -23.42501 -22.46386 -22.26861 -21.23557 -20.80835 -19.21442 -18.39929 -18.00028 -17.80268 -17.24351 -17.03254 -16.58582 -16.28285 -16.10175 -15.94181 -15.83878 -15.57674 -15.15194 -14.88375 -14.86315 -14.34045 -14.26920 -14.20767 -13.85508 -13.70823 -13.49576 -13.39517 -13.29089 -13.17350 -13.00939 -12.78500 -12.65519 -12.56257 -12.36594 -12.33760 -12.10859 -12.05029 -11.95839 -11.84338 -11.51818 -11.33504 -10.97588 -10.38218 -10.24758 -9.80826 -9.75623 -9.51697 -9.48164 -8.28977 -6.02288 0.35922 0.51333 1.44007 1.52679 1.63156 1.66189 2.02085 2.12359 2.33983 2.77478 2.98870 3.08010 3.24362 3.88159 3.89891 3.95655 4.14358 4.17110 4.17210 4.26367 4.28401 4.30573 4.31211 4.37625 4.55176 4.59536 4.65619 4.66830 4.75662 4.80026 4.84850 4.92408 4.96108 4.97462 5.00647 5.08694 5.11453 5.17005 5.21153 5.35764 5.44144 5.47327 5.49107 5.56860 5.57743 5.63207 5.70662 5.91520 6.01478 6.13158 6.43554 6.95196 7.13611 7.54398 7.58900 8.03902 8.73694 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013524 B = 0.002193 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.956560 B =12767.146062 C =13655.862761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C 0.114 3.886 4 N -0.448 5.448 5 C -0.357 4.357 6 H 0.107 0.893 7 C 0.003 3.997 8 N -0.891 5.891 9 Si 0.983 3.017 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.260 1.260 13 C 0.453 3.547 14 O -0.639 6.639 15 C -0.112 4.112 16 C 0.174 3.826 17 N -0.731 5.731 18 C 0.696 3.304 19 O -0.633 6.633 20 N -0.624 5.624 21 C 0.070 3.930 22 C 0.171 3.829 23 C -0.117 4.117 24 C -0.104 4.104 25 C -0.127 4.127 26 C -0.124 4.124 27 C -0.140 4.140 28 C -0.120 4.120 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.038 0.962 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.026 0.974 36 H 0.272 0.728 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.042 0.958 40 H 0.044 0.956 41 H 0.411 0.589 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.122 0.878 47 H 0.151 0.849 48 H 0.149 0.851 49 H 0.141 0.859 50 H 0.124 0.876 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.376 -7.752 -4.161 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C -0.009 4.009 4 N -0.165 5.165 5 C -0.484 4.484 6 H 0.125 0.875 7 C -0.201 4.201 8 N -0.528 5.528 9 Si 0.807 3.193 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.184 1.184 13 C 0.242 3.758 14 O -0.528 6.528 15 C -0.152 4.152 16 C 0.048 3.952 17 N -0.388 5.388 18 C 0.397 3.603 19 O -0.514 6.514 20 N -0.360 5.360 21 C -0.072 4.072 22 C 0.049 3.951 23 C -0.118 4.118 24 C -0.123 4.123 25 C -0.145 4.145 26 C -0.142 4.142 27 C -0.158 4.158 28 C -0.139 4.139 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.250 0.750 42 H 0.092 0.908 43 H 0.117 0.883 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.140 0.860 47 H 0.169 0.831 48 H 0.167 0.833 49 H 0.158 0.842 50 H 0.142 0.858 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 19.518 -7.683 -5.259 21.625 hybrid contribution -0.438 0.218 0.845 0.976 sum 19.080 -7.465 -4.415 20.959 Atomic orbital electron populations 1.21612 0.93755 1.02335 1.01695 1.21722 0.97220 0.96918 1.00461 1.21421 0.81646 0.96244 1.01627 1.43773 1.05218 1.61941 1.05528 1.19844 1.08287 1.29769 0.90506 0.87517 1.26211 0.96862 0.92837 1.04155 1.70057 1.31244 1.17038 1.34490 0.85094 0.77928 0.79314 0.77004 1.19365 1.21173 1.18372 1.20908 0.90839 0.80868 0.83162 1.90530 1.71579 1.57860 1.32859 1.21344 0.92156 1.05383 0.96282 1.20489 0.78047 1.00665 0.95973 1.45056 1.06574 1.78869 1.08340 1.16128 0.82567 0.77806 0.83756 1.90875 1.68646 1.59518 1.32331 1.47094 1.02772 1.76830 1.09308 1.22046 0.98139 1.03246 0.83720 1.20320 0.97465 0.92083 0.85241 1.20395 0.95461 0.97099 0.98886 1.21349 0.96474 0.95377 0.99062 1.21512 1.00107 0.94449 0.98451 1.21481 0.93920 1.00928 0.97862 1.21371 0.98629 0.94775 1.01053 1.21249 0.98667 0.95177 0.98805 0.90905 0.92398 0.93160 0.94334 0.92326 0.88697 0.95539 0.91820 0.87578 0.87982 0.93939 0.93710 0.75042 0.90775 0.88297 0.90976 0.91446 0.85968 0.83141 0.83306 0.84157 0.85826 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.55 9.91 71.98 0.71 -3.84 16 2 C -0.12 -5.19 6.22 30.59 0.19 -5.00 16 3 C 0.11 5.62 4.90 86.38 0.42 6.04 16 4 N -0.45 -22.40 2.56 -635.54 -1.63 -24.03 16 5 C -0.36 -17.02 8.70 84.04 0.73 -16.29 16 6 H 0.11 4.61 6.97 -2.91 -0.02 4.59 16 7 C 0.00 0.12 4.92 84.93 0.42 0.54 16 8 N -0.89 -45.90 11.34 21.66 0.25 -45.65 16 9 Si 0.98 36.88 29.61 68.60 2.03 38.91 16 10 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 11 H -0.29 -10.88 7.11 99.48 0.71 -10.17 16 12 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 13 C 0.45 22.18 7.60 87.66 0.67 22.84 16 14 O -0.64 -35.39 15.65 -3.05 -0.05 -35.44 16 15 C -0.11 -4.19 4.47 29.85 0.13 -4.05 16 16 C 0.17 6.55 4.96 86.38 0.43 6.98 16 17 N -0.73 -21.45 5.42 -478.54 -2.59 -24.04 16 18 C 0.70 22.10 8.28 179.05 1.48 23.58 16 19 O -0.63 -26.07 15.45 -3.98 -0.06 -26.13 16 20 N -0.62 -13.61 2.86 -869.33 -2.48 -16.09 16 21 C 0.07 0.86 10.20 127.77 1.30 2.17 16 22 C 0.17 3.37 5.53 85.63 0.47 3.84 16 23 C -0.12 -2.43 5.46 -19.87 -0.11 -2.54 16 24 C -0.10 -1.56 9.70 22.27 0.22 -1.34 16 25 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 26 C -0.12 -2.11 10.05 22.27 0.22 -1.89 16 27 C -0.14 -3.08 10.05 22.27 0.22 -2.85 16 28 C -0.12 -3.09 9.70 22.27 0.22 -2.88 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.69 8.14 -2.38 -0.02 1.68 16 33 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.10 4.89 5.35 -2.39 -0.01 4.88 16 35 H 0.03 1.39 7.59 -2.39 -0.02 1.37 16 36 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 37 H 0.11 3.47 7.65 -2.38 -0.02 3.46 16 38 H 0.10 3.64 8.10 -2.39 -0.02 3.62 16 39 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 40 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 41 H 0.41 9.00 6.20 -92.71 -0.58 8.42 16 42 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.10 0.72 8.07 -2.39 -0.02 0.70 16 44 H 0.07 0.85 6.36 -2.39 -0.02 0.83 16 45 H 0.07 1.68 7.36 -2.38 -0.02 1.66 16 46 H 0.12 1.41 8.01 -2.38 -0.02 1.40 16 47 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 48 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 49 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 50 H 0.12 2.45 8.06 -2.91 -0.02 2.42 16 51 H 0.10 3.08 7.58 -2.91 -0.02 3.06 16 Total: -1.00 -73.41 419.75 3.77 -69.64 By element: Atomic # 1 Polarization: 38.79 SS G_CDS: 0.34 Total: 39.14 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: 7.96 Total: 23.69 kcal Atomic # 7 Polarization: -103.35 SS G_CDS: -6.46 Total: -109.81 kcal Atomic # 8 Polarization: -61.46 SS G_CDS: -0.11 Total: -61.57 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.03 Total: 38.91 kcal Total: -73.41 3.77 -69.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104043165.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.692 kcal (2) G-P(sol) polarization free energy of solvation -73.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds