Wall clock time and date at job start Wed Apr 1 2020 05:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47153 * 2 1 4 4 N 1.46505 * 109.47166 * 120.00218 * 2 1 3 5 5 C 1.34774 * 120.00083 * 84.99841 * 4 2 1 6 6 O 1.21272 * 120.00195 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99619 * 179.97438 * 5 4 2 8 8 C 1.53005 * 109.46827 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.46871 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.46937 * 180.02562 * 9 8 7 11 11 O 1.21283 * 120.00489 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99979 * 180.02562 * 10 9 8 13 13 C 1.46494 * 120.00110 * 3.00057 * 12 10 9 14 14 C 1.50699 * 109.47341 * 229.65708 * 13 12 10 15 15 H 1.08002 * 119.99934 * 243.51001 * 14 13 12 16 16 C 1.37873 * 120.00129 * 63.50696 * 14 13 12 17 17 N 1.31510 * 119.99989 * 186.18836 * 16 14 13 18 18 Si 1.86796 * 119.99962 * 6.19169 * 16 14 13 19 19 H 1.48500 * 109.47221 * 84.31653 * 18 16 14 20 20 H 1.48509 * 109.46876 * 204.31931 * 18 16 14 21 21 H 1.48504 * 109.47014 * 324.31299 * 18 16 14 22 22 C 1.46503 * 119.99916 * 183.00436 * 12 10 9 23 23 C 1.50697 * 109.47161 * 274.90130 * 22 12 10 24 24 C 1.38664 * 120.42237 * 274.77447 * 23 22 12 25 25 C 1.38624 * 118.42188 * 179.78231 * 24 23 22 26 26 C 1.38229 * 119.16109 * 0.51446 * 25 24 23 27 27 N 1.31858 * 120.76260 * 359.72841 * 26 25 24 28 28 C 1.31886 * 121.72415 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47337 * 60.00204 * 1 2 3 30 30 H 1.08999 * 109.46807 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47284 * 299.99602 * 1 2 3 32 32 H 1.09003 * 109.47160 * 240.00019 * 2 1 3 33 33 H 1.09004 * 109.47298 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46832 * 300.00105 * 3 2 1 35 35 H 1.09003 * 109.47072 * 59.99965 * 3 2 1 36 36 H 0.97001 * 119.99157 * 264.99631 * 4 2 1 37 37 H 1.09001 * 109.47382 * 60.00680 * 7 5 4 38 38 H 1.08998 * 109.47709 * 300.00428 * 7 5 4 39 39 H 1.08990 * 109.46959 * 60.00507 * 8 7 5 40 40 H 1.09000 * 109.47322 * 299.99835 * 8 7 5 41 41 H 1.09006 * 109.47404 * 59.99963 * 9 8 7 42 42 H 1.08998 * 109.47449 * 300.00205 * 9 8 7 43 43 H 1.09001 * 109.47260 * 109.65529 * 13 12 10 44 44 H 1.09004 * 109.47493 * 349.65956 * 13 12 10 45 45 H 0.97008 * 120.00238 * 179.97438 * 17 16 14 46 46 H 1.09003 * 109.46866 * 34.90710 * 22 12 10 47 47 H 1.09008 * 109.46861 * 154.90216 * 22 12 10 48 48 H 1.08002 * 120.79127 * 0.02562 * 24 23 22 49 49 H 1.08007 * 120.42069 * 180.21730 * 25 24 23 50 50 H 1.07998 * 119.61965 * 179.74697 * 26 25 24 51 51 H 1.08000 * 119.61522 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1470 -2.0322 1.1944 6 8 1.8591 -2.6677 0.2024 7 6 2.6500 -2.7425 2.4247 8 6 2.7019 -4.2484 2.1587 9 6 3.2119 -4.9696 3.4080 10 6 3.2636 -6.4527 3.1458 11 8 2.9263 -6.8899 2.0660 12 7 3.6848 -7.2934 4.1114 13 6 4.0295 -6.7729 5.4366 14 6 5.3786 -7.3030 5.8492 15 1 5.4651 -7.9457 6.7129 16 6 6.5022 -6.9676 5.1241 17 7 7.6589 -7.5250 5.4085 18 14 6.3816 -5.7215 3.7377 19 1 6.4880 -4.3492 4.2950 20 1 7.4846 -5.9497 2.7698 21 1 5.0765 -5.8752 3.0461 22 6 3.7978 -8.7278 3.8356 23 6 2.4597 -9.3873 4.0488 24 6 2.0760 -9.8041 5.3145 25 6 0.8342 -10.4018 5.4641 26 6 0.0299 -10.5711 4.3527 27 7 0.4297 -10.1668 3.1630 28 6 1.6018 -9.5892 2.9845 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9562 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.2491 -0.1823 1.9894 37 1 1.9777 -2.5437 3.2594 38 1 3.6492 -2.3825 2.6692 39 1 3.3743 -4.4469 1.3242 40 1 1.7027 -4.6088 1.9140 41 1 2.5391 -4.7710 4.2423 42 1 4.2109 -4.6093 3.6532 43 1 3.2777 -7.0912 6.1589 44 1 4.0621 -5.6839 5.4022 45 1 8.4495 -7.2893 4.8981 46 1 4.1153 -8.8754 2.8034 47 1 4.5324 -9.1704 4.5085 48 1 2.7275 -9.6628 6.1642 49 1 0.5014 -10.7354 6.4359 50 1 -0.9372 -11.0396 4.4601 51 1 1.8947 -9.2708 1.9949 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104046695.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:03 Heat of formation + Delta-G solvation = -35.179830 kcal Electronic energy + Delta-G solvation = -30817.738342 eV Core-core repulsion = 26717.366050 eV Total energy + Delta-G solvation = -4100.372292 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.10017 -39.88379 -39.04042 -36.28313 -35.38795 -34.09004 -32.84075 -32.09223 -31.77202 -31.29498 -28.55853 -28.00200 -27.55376 -25.82984 -23.23973 -23.07154 -22.46337 -21.61970 -20.99765 -20.36652 -18.52401 -17.25407 -16.87166 -16.74597 -16.55625 -16.35536 -16.11965 -15.56419 -15.51815 -15.07234 -14.78495 -14.53757 -14.13701 -14.02212 -13.56125 -13.43988 -13.34934 -13.02873 -12.83865 -12.72831 -12.66946 -12.60662 -12.50538 -12.02228 -11.78136 -11.68381 -11.63379 -11.44980 -11.26478 -11.15390 -10.97006 -10.77210 -10.70727 -10.58004 -9.96116 -9.86108 -9.51437 -9.46930 -9.27710 -9.15621 -9.05025 -8.83780 -8.55372 -7.64198 -6.37337 -4.44863 1.42835 1.62845 2.60761 2.91662 3.00462 3.09379 3.27924 3.61496 3.87627 4.22011 4.29957 4.48270 4.70421 4.75817 4.77472 4.88082 4.93035 5.10077 5.11510 5.14001 5.22495 5.32407 5.33402 5.35631 5.39597 5.44031 5.47599 5.58646 5.59932 5.63124 5.67672 5.79605 5.83726 5.90373 5.95222 6.06985 6.26485 6.31873 6.34008 6.39378 6.42668 6.59338 6.60524 6.66238 6.79140 7.06903 7.19769 7.35226 7.40403 8.15587 8.16589 8.29845 8.39842 8.66907 8.98047 9.25308 10.72097 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009544 B = 0.003087 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.932358 B = 9068.444038 C =11362.542576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 C -0.160 4.160 4 N -0.734 5.734 5 C 0.513 3.487 6 O -0.533 6.533 7 C -0.143 4.143 8 C -0.086 4.086 9 C -0.147 4.147 10 C 0.520 3.480 11 O -0.565 6.565 12 N -0.596 5.596 13 C 0.196 3.804 14 C -0.539 4.539 15 H 0.078 0.922 16 C 0.089 3.911 17 N -0.879 5.879 18 Si 0.849 3.151 19 H -0.276 1.276 20 H -0.291 1.291 21 H -0.225 1.225 22 C 0.162 3.838 23 C -0.138 4.138 24 C -0.061 4.061 25 C -0.182 4.182 26 C 0.084 3.916 27 N -0.493 5.493 28 C 0.117 3.883 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.399 0.601 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.036 0.964 44 H 0.042 0.958 45 H 0.268 0.732 46 H 0.074 0.926 47 H 0.108 0.892 48 H 0.137 0.863 49 H 0.129 0.871 50 H 0.147 0.853 51 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.386 11.830 -2.316 16.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.030 3.970 3 C -0.218 4.218 4 N -0.387 5.387 5 C 0.300 3.700 6 O -0.408 6.408 7 C -0.183 4.183 8 C -0.124 4.124 9 C -0.187 4.187 10 C 0.309 3.691 11 O -0.445 6.445 12 N -0.329 5.329 13 C 0.077 3.923 14 C -0.577 4.577 15 H 0.096 0.904 16 C -0.118 4.118 17 N -0.514 5.514 18 Si 0.678 3.322 19 H -0.202 1.202 20 H -0.218 1.218 21 H -0.150 1.150 22 C 0.039 3.961 23 C -0.141 4.141 24 C -0.087 4.087 25 C -0.202 4.202 26 C -0.073 4.073 27 N -0.202 5.202 28 C -0.040 4.040 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.233 0.767 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.126 0.874 48 H 0.155 0.845 49 H 0.146 0.854 50 H 0.165 0.835 51 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.099 11.009 -4.337 16.923 hybrid contribution 0.975 1.143 0.720 1.666 sum -11.123 12.152 -3.617 16.867 Atomic orbital electron populations 1.22184 0.95377 1.02740 1.01892 1.20915 0.94157 0.92751 0.89220 1.22073 1.01746 0.95116 1.02823 1.46192 1.68562 1.07258 1.16707 1.20841 0.77101 0.81938 0.90093 1.90724 1.49151 1.65803 1.35153 1.21754 1.03030 0.97431 0.96125 1.21047 1.03546 0.90504 0.97326 1.22152 1.03412 0.93570 0.99558 1.20168 0.76048 0.88595 0.84276 1.90603 1.50154 1.78747 1.25012 1.49228 1.63696 1.05807 1.14127 1.19782 0.96635 0.95339 0.80525 1.21147 0.89396 1.32764 1.14424 0.90401 1.25043 0.95087 0.95128 0.96500 1.69918 1.00035 1.41025 1.40462 0.87759 0.79890 0.81614 0.82969 1.20214 1.21777 1.14950 1.20020 0.91949 0.81527 1.02626 1.21528 0.99475 0.98968 0.94115 1.21614 0.95593 0.94045 0.97453 1.22076 0.95815 1.02160 1.00133 1.22653 0.99306 0.97114 0.88272 1.67699 1.16520 1.10589 1.25383 1.22868 0.88546 0.92987 0.99630 0.91764 0.91979 0.92564 0.89525 0.91965 0.91024 0.92096 0.76704 0.88763 0.88863 0.90630 0.90580 0.89572 0.89248 0.94534 0.93971 0.92182 0.90767 0.87424 0.84545 0.85351 0.83549 0.82524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.48 37.16 0.35 -1.02 16 2 C 0.13 1.17 3.18 -67.93 -0.22 0.95 16 3 C -0.16 -0.94 9.38 37.16 0.35 -0.59 16 4 N -0.73 -6.75 5.08 -53.81 -0.27 -7.03 16 5 C 0.51 6.60 7.79 -10.99 -0.09 6.52 16 6 O -0.53 -9.23 15.64 5.56 0.09 -9.14 16 7 C -0.14 -1.66 5.70 -27.88 -0.16 -1.82 16 8 C -0.09 -1.36 3.79 -26.73 -0.10 -1.46 16 9 C -0.15 -2.44 3.50 -27.88 -0.10 -2.54 16 10 C 0.52 10.42 5.23 -10.99 -0.06 10.36 16 11 O -0.56 -12.63 14.87 5.56 0.08 -12.54 16 12 N -0.60 -11.87 1.71 -176.43 -0.30 -12.17 16 13 C 0.20 3.91 5.39 -5.20 -0.03 3.88 16 14 C -0.54 -12.99 8.42 -34.44 -0.29 -13.28 16 15 H 0.08 2.05 8.06 -52.49 -0.42 1.63 16 16 C 0.09 2.28 5.46 -17.82 -0.10 2.18 16 17 N -0.88 -24.44 13.96 55.43 0.77 -23.66 16 18 Si 0.85 18.99 24.37 -169.99 -4.14 14.85 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.22 -4.74 2.19 56.52 0.12 -4.62 16 22 C 0.16 3.15 5.32 -5.19 -0.03 3.12 16 23 C -0.14 -2.43 5.44 -104.49 -0.57 -3.00 16 24 C -0.06 -0.95 9.88 -39.28 -0.39 -1.34 16 25 C -0.18 -2.49 10.11 -39.44 -0.40 -2.89 16 26 C 0.08 1.21 11.18 -17.54 -0.20 1.02 16 27 N -0.49 -8.59 10.36 -13.25 -0.14 -8.72 16 28 C 0.12 2.11 10.53 -17.55 -0.18 1.93 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.40 2.50 8.60 -40.82 -0.35 2.14 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.37 8.06 -51.93 -0.42 0.95 16 40 H 0.08 1.31 8.06 -51.93 -0.42 0.90 16 41 H 0.09 1.22 7.86 -51.93 -0.41 0.81 16 42 H 0.09 1.51 4.12 -51.93 -0.21 1.29 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.04 0.79 5.11 -51.93 -0.27 0.53 16 45 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.07 1.48 7.54 -51.93 -0.39 1.09 16 47 H 0.11 2.20 6.82 -51.92 -0.35 1.85 16 48 H 0.14 2.05 8.06 -52.49 -0.42 1.62 16 49 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 50 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 51 H 0.16 2.94 7.58 -52.49 -0.40 2.54 16 LS Contribution 407.33 15.07 6.14 6.14 Total: -1.00 -32.41 407.33 -8.49 -40.90 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -8.52 Total: 9.34 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -2.20 Total: 2.04 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.06 Total: -51.58 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: 0.17 Total: -21.68 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.14 Total: 14.85 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.41 -8.49 -40.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104046695.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.724 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds