Wall clock time and date at job start Wed Apr 1 2020 05:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47153 * 2 1 4 4 N 1.46505 * 109.47166 * 120.00218 * 2 1 3 5 5 C 1.34774 * 120.00083 * 84.99841 * 4 2 1 6 6 O 1.21272 * 120.00195 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99619 * 179.97438 * 5 4 2 8 8 C 1.53005 * 109.46827 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.46871 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.46937 * 180.02562 * 9 8 7 11 11 O 1.21283 * 120.00489 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99979 * 180.02562 * 10 9 8 13 13 C 1.46494 * 120.00110 * 3.00057 * 12 10 9 14 14 C 1.50699 * 109.47341 * 229.65708 * 13 12 10 15 15 H 1.08002 * 119.99934 * 243.51001 * 14 13 12 16 16 C 1.37873 * 120.00129 * 63.50696 * 14 13 12 17 17 N 1.31510 * 119.99989 * 186.18836 * 16 14 13 18 18 Si 1.86796 * 119.99962 * 6.19169 * 16 14 13 19 19 H 1.48500 * 109.47221 * 84.31653 * 18 16 14 20 20 H 1.48509 * 109.46876 * 204.31931 * 18 16 14 21 21 H 1.48504 * 109.47014 * 324.31299 * 18 16 14 22 22 C 1.46503 * 119.99916 * 183.00436 * 12 10 9 23 23 C 1.50697 * 109.47161 * 274.90130 * 22 12 10 24 24 C 1.38664 * 120.42237 * 274.77447 * 23 22 12 25 25 C 1.38624 * 118.42188 * 179.78231 * 24 23 22 26 26 C 1.38229 * 119.16109 * 0.51446 * 25 24 23 27 27 N 1.31858 * 120.76260 * 359.72841 * 26 25 24 28 28 C 1.31886 * 121.72415 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47337 * 60.00204 * 1 2 3 30 30 H 1.08999 * 109.46807 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47284 * 299.99602 * 1 2 3 32 32 H 1.09003 * 109.47160 * 240.00019 * 2 1 3 33 33 H 1.09004 * 109.47298 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46832 * 300.00105 * 3 2 1 35 35 H 1.09003 * 109.47072 * 59.99965 * 3 2 1 36 36 H 0.97001 * 119.99157 * 264.99631 * 4 2 1 37 37 H 1.09001 * 109.47382 * 60.00680 * 7 5 4 38 38 H 1.08998 * 109.47709 * 300.00428 * 7 5 4 39 39 H 1.08990 * 109.46959 * 60.00507 * 8 7 5 40 40 H 1.09000 * 109.47322 * 299.99835 * 8 7 5 41 41 H 1.09006 * 109.47404 * 59.99963 * 9 8 7 42 42 H 1.08998 * 109.47449 * 300.00205 * 9 8 7 43 43 H 1.09001 * 109.47260 * 109.65529 * 13 12 10 44 44 H 1.09004 * 109.47493 * 349.65956 * 13 12 10 45 45 H 0.97008 * 120.00238 * 179.97438 * 17 16 14 46 46 H 1.09003 * 109.46866 * 34.90710 * 22 12 10 47 47 H 1.09008 * 109.46861 * 154.90216 * 22 12 10 48 48 H 1.08002 * 120.79127 * 0.02562 * 24 23 22 49 49 H 1.08007 * 120.42069 * 180.21730 * 25 24 23 50 50 H 1.07998 * 119.61965 * 179.74697 * 26 25 24 51 51 H 1.08000 * 119.61522 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1470 -2.0322 1.1944 6 8 1.8591 -2.6677 0.2024 7 6 2.6500 -2.7425 2.4247 8 6 2.7019 -4.2484 2.1587 9 6 3.2119 -4.9696 3.4080 10 6 3.2636 -6.4527 3.1458 11 8 2.9263 -6.8899 2.0660 12 7 3.6848 -7.2934 4.1114 13 6 4.0295 -6.7729 5.4366 14 6 5.3786 -7.3030 5.8492 15 1 5.4651 -7.9457 6.7129 16 6 6.5022 -6.9676 5.1241 17 7 7.6589 -7.5250 5.4085 18 14 6.3816 -5.7215 3.7377 19 1 6.4880 -4.3492 4.2950 20 1 7.4846 -5.9497 2.7698 21 1 5.0765 -5.8752 3.0461 22 6 3.7978 -8.7278 3.8356 23 6 2.4597 -9.3873 4.0488 24 6 2.0760 -9.8041 5.3145 25 6 0.8342 -10.4018 5.4641 26 6 0.0299 -10.5711 4.3527 27 7 0.4297 -10.1668 3.1630 28 6 1.6018 -9.5892 2.9845 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9562 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.2491 -0.1823 1.9894 37 1 1.9777 -2.5437 3.2594 38 1 3.6492 -2.3825 2.6692 39 1 3.3743 -4.4469 1.3242 40 1 1.7027 -4.6088 1.9140 41 1 2.5391 -4.7710 4.2423 42 1 4.2109 -4.6093 3.6532 43 1 3.2777 -7.0912 6.1589 44 1 4.0621 -5.6839 5.4022 45 1 8.4495 -7.2893 4.8981 46 1 4.1153 -8.8754 2.8034 47 1 4.5324 -9.1704 4.5085 48 1 2.7275 -9.6628 6.1642 49 1 0.5014 -10.7354 6.4359 50 1 -0.9372 -11.0396 4.4601 51 1 1.8947 -9.2708 1.9949 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104046695.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:02 Heat of formation + Delta-G solvation = -56.730302 kcal Electronic energy + Delta-G solvation = -30818.672841 eV Core-core repulsion = 26717.366050 eV Total energy + Delta-G solvation = -4101.306791 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.46893 -40.91679 -40.45527 -37.18001 -36.95879 -35.36914 -34.59014 -33.55799 -32.75691 -32.45573 -29.77187 -29.71451 -28.11657 -27.22640 -24.63231 -24.29519 -24.05379 -22.80007 -21.91552 -21.33442 -20.09255 -18.82307 -18.17674 -18.13336 -17.85631 -17.63708 -17.12353 -16.89112 -16.69319 -16.61596 -16.02502 -15.87562 -15.24661 -15.21814 -14.95170 -14.67541 -14.62294 -14.20192 -14.15279 -13.90926 -13.80240 -13.65396 -13.36860 -13.08748 -12.99890 -12.93781 -12.80795 -12.70601 -12.52525 -12.32148 -12.31070 -12.29067 -12.07241 -11.92673 -11.66819 -11.23216 -10.93671 -10.81770 -10.77441 -10.56178 -10.40632 -10.11665 -9.89590 -9.27902 -8.36024 -6.45369 0.17566 0.37217 1.17894 1.28888 1.43827 1.64911 1.96753 2.16385 2.33317 2.43817 2.95921 3.11909 3.56121 3.69278 3.75820 3.93828 3.95315 3.98577 4.01737 4.08883 4.13282 4.15172 4.17524 4.30779 4.44795 4.50074 4.56210 4.60194 4.68460 4.72582 4.75146 4.80743 4.82533 4.87175 4.91375 4.98993 5.02851 5.05874 5.11128 5.24116 5.24430 5.30257 5.32398 5.40277 5.45801 5.57644 5.67305 5.82960 6.23935 6.58824 6.62550 6.83083 7.04630 7.26783 7.30238 7.40137 8.76318 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009544 B = 0.003087 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.932358 B = 9068.444038 C =11362.542576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.128 3.872 3 C -0.151 4.151 4 N -0.716 5.716 5 C 0.508 3.492 6 O -0.589 6.589 7 C -0.135 4.135 8 C -0.079 4.079 9 C -0.143 4.143 10 C 0.509 3.491 11 O -0.593 6.593 12 N -0.598 5.598 13 C 0.203 3.797 14 C -0.528 4.528 15 H 0.047 0.953 16 C 0.042 3.958 17 N -0.930 5.930 18 Si 0.898 3.102 19 H -0.248 1.248 20 H -0.319 1.319 21 H -0.212 1.212 22 C 0.168 3.832 23 C -0.149 4.149 24 C -0.066 4.066 25 C -0.165 4.165 26 C 0.085 3.915 27 N -0.515 5.515 28 C 0.101 3.899 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.417 0.583 37 H 0.131 0.869 38 H 0.118 0.882 39 H 0.042 0.958 40 H 0.053 0.947 41 H 0.122 0.878 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.265 0.735 46 H 0.056 0.944 47 H 0.091 0.909 48 H 0.143 0.857 49 H 0.170 0.830 50 H 0.185 0.815 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.775 14.298 -0.316 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.024 3.976 3 C -0.208 4.208 4 N -0.369 5.369 5 C 0.296 3.704 6 O -0.469 6.469 7 C -0.175 4.175 8 C -0.118 4.118 9 C -0.182 4.182 10 C 0.300 3.700 11 O -0.476 6.476 12 N -0.329 5.329 13 C 0.084 3.916 14 C -0.566 4.566 15 H 0.065 0.935 16 C -0.160 4.160 17 N -0.569 5.569 18 Si 0.725 3.275 19 H -0.172 1.172 20 H -0.247 1.247 21 H -0.136 1.136 22 C 0.045 3.955 23 C -0.152 4.152 24 C -0.092 4.092 25 C -0.184 4.184 26 C -0.073 4.073 27 N -0.224 5.224 28 C -0.055 4.055 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.255 0.745 37 H 0.149 0.851 38 H 0.136 0.864 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.140 0.860 42 H 0.112 0.888 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.109 0.891 48 H 0.160 0.840 49 H 0.188 0.812 50 H 0.202 0.798 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.506 13.541 -2.292 19.976 hybrid contribution 1.615 0.249 0.144 1.641 sum -12.891 13.790 -2.148 18.999 Atomic orbital electron populations 1.22142 0.94994 1.01142 1.03442 1.21015 0.94495 0.94178 0.87937 1.22013 1.01686 0.92859 1.04260 1.46073 1.67017 1.06236 1.17593 1.21149 0.76555 0.82928 0.89770 1.90711 1.51877 1.67173 1.37176 1.21731 1.05344 0.93947 0.96473 1.20890 1.01294 0.93669 0.95898 1.22166 1.04502 0.90529 1.01029 1.20880 0.75384 0.90164 0.83610 1.90603 1.51277 1.79556 1.26154 1.49077 1.63639 1.06052 1.14181 1.19744 0.94705 0.96473 0.80663 1.21327 0.91238 1.31190 1.12891 0.93488 1.25707 0.94784 0.96807 0.98655 1.70051 1.00924 1.43522 1.42358 0.87068 0.79325 0.81022 0.80074 1.17219 1.24709 1.13583 1.19852 0.92946 0.81714 1.01028 1.21279 0.98498 1.00279 0.95188 1.21767 0.96771 0.94132 0.96534 1.22471 0.94217 0.99959 1.01735 1.23344 1.00683 0.95843 0.87380 1.67692 1.16124 1.11222 1.27339 1.22580 0.89481 0.94417 0.99013 0.90407 0.95063 0.90854 0.92423 0.91968 0.89995 0.90259 0.74528 0.85130 0.86405 0.93911 0.92768 0.86023 0.88786 0.92620 0.91515 0.92637 0.92552 0.89114 0.83958 0.81220 0.79771 0.84605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.48 71.98 0.68 -1.77 16 2 C 0.13 2.07 3.18 44.99 0.14 2.21 16 3 C -0.15 -1.35 9.38 71.98 0.68 -0.67 16 4 N -0.72 -11.64 5.08 -442.54 -2.25 -13.89 16 5 C 0.51 12.49 7.79 87.66 0.68 13.17 16 6 O -0.59 -21.03 15.64 -3.01 -0.05 -21.08 16 7 C -0.14 -2.73 5.70 29.85 0.17 -2.56 16 8 C -0.08 -2.41 3.79 30.60 0.12 -2.30 16 9 C -0.14 -4.37 3.50 29.85 0.10 -4.26 16 10 C 0.51 20.10 5.23 87.66 0.46 20.56 16 11 O -0.59 -27.25 14.87 -3.04 -0.05 -27.29 16 12 N -0.60 -23.47 1.71 -830.49 -1.42 -24.89 16 13 C 0.20 7.71 5.39 85.63 0.46 8.18 16 14 C -0.53 -25.41 8.42 25.60 0.22 -25.19 16 15 H 0.05 2.52 8.06 -2.91 -0.02 2.49 16 16 C 0.04 2.17 5.46 84.65 0.46 2.63 16 17 N -0.93 -53.34 13.96 21.45 0.30 -53.04 16 18 Si 0.90 39.13 24.37 68.60 1.67 40.80 16 19 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 20 H -0.32 -15.36 7.11 99.48 0.71 -14.66 16 21 H -0.21 -8.69 2.19 99.48 0.22 -8.47 16 22 C 0.17 6.73 5.32 85.63 0.46 7.18 16 23 C -0.15 -5.29 5.44 -19.78 -0.11 -5.40 16 24 C -0.07 -1.94 9.88 22.46 0.22 -1.72 16 25 C -0.16 -3.92 10.11 22.36 0.23 -3.69 16 26 C 0.08 2.20 11.18 84.69 0.95 3.14 16 27 N -0.51 -17.49 10.36 -195.84 -2.03 -19.52 16 28 C 0.10 3.75 10.53 84.67 0.89 4.64 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 1.28 7.58 -2.39 -0.02 1.26 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.42 3.68 8.60 -92.71 -0.80 2.89 16 37 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.04 1.57 8.06 -2.39 -0.02 1.55 16 40 H 0.05 1.88 8.06 -2.39 -0.02 1.86 16 41 H 0.12 2.89 7.86 -2.38 -0.02 2.87 16 42 H 0.09 2.83 4.12 -2.39 -0.01 2.82 16 43 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.07 2.25 5.11 -2.38 -0.01 2.24 16 45 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 46 H 0.06 2.40 7.54 -2.39 -0.02 2.38 16 47 H 0.09 3.87 6.82 -2.38 -0.02 3.86 16 48 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 49 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 50 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 51 H 0.14 5.46 7.58 -2.91 -0.02 5.44 16 Total: -1.00 -76.57 407.33 2.63 -73.95 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: -0.36 Total: 30.82 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 6.81 Total: 14.14 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -5.40 Total: -111.33 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: -0.09 Total: -48.37 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.67 Total: 40.80 kcal Total: -76.57 2.63 -73.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104046695.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.216 kcal (2) G-P(sol) polarization free energy of solvation -76.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds