Wall clock time and date at job start Wed Apr 1 2020 05:14:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53001 * 109.47286 * 2 1
4 4 N 1.46505 * 109.46982 * 180.02562 * 3 2 1
5 5 C 1.36935 * 119.99857 * 265.25555 * 4 3 2
6 6 H 1.08000 * 120.00296 * 336.44580 * 5 4 3
7 7 C 1.38806 * 119.99738 * 156.45461 * 5 4 3
8 8 N 1.31613 * 120.00614 * 5.36188 * 7 5 4
9 9 Si 1.86801 * 119.99825 * 185.37171 * 7 5 4
10 10 H 1.48500 * 109.47578 * 89.99438 * 9 7 5
11 11 H 1.48499 * 109.47245 * 209.99414 * 9 7 5
12 12 H 1.48503 * 109.47182 * 329.99369 * 9 7 5
13 13 C 1.46500 * 119.99685 * 85.25512 * 4 3 2
14 14 C 1.50695 * 109.47146 * 269.99800 * 13 4 3
15 15 O 1.21278 * 120.00053 * 0.02562 * 14 13 4
16 16 N 1.34778 * 120.00112 * 180.02562 * 14 13 4
17 17 C 1.46497 * 120.00197 * 179.97438 * 16 14 13
18 18 C 1.50703 * 109.47446 * 179.97438 * 17 16 14
19 19 O 1.21288 * 119.99506 * 0.02562 * 18 17 16
20 20 N 1.34769 * 119.99984 * 180.02562 * 18 17 16
21 21 C 1.39927 * 120.00016 * 183.98079 * 20 18 17
22 22 C 1.38898 * 120.06524 * 325.60103 * 21 20 18
23 23 C 1.38091 * 119.92791 * 180.02562 * 22 21 20
24 24 C 1.38305 * 120.06910 * 359.97434 * 23 22 21
25 25 C 1.38252 * 120.14173 * 0.02903 * 24 23 22
26 26 C 1.38130 * 120.07290 * 0.24921 * 25 24 23
27 27 C 1.50703 * 120.03901 * 179.72748 * 26 25 24
28 28 C 1.53002 * 109.46819 * 265.00382 * 27 26 25
29 29 H 1.08996 * 109.47720 * 59.99254 * 1 2 3
30 30 H 1.08999 * 109.47297 * 179.97438 * 1 2 3
31 31 H 1.09002 * 109.46882 * 299.99692 * 1 2 3
32 32 H 1.09002 * 109.46882 * 240.00308 * 2 1 3
33 33 H 1.09003 * 109.47339 * 120.00745 * 2 1 3
34 34 H 1.09002 * 109.46908 * 60.00324 * 3 2 1
35 35 H 1.09000 * 109.47180 * 300.00243 * 3 2 1
36 36 H 0.97003 * 120.00585 * 180.02562 * 8 7 5
37 37 H 1.09000 * 109.46753 * 149.99639 * 13 4 3
38 38 H 1.08999 * 109.47020 * 29.99991 * 13 4 3
39 39 H 0.97000 * 120.00127 * 359.97438 * 16 14 13
40 40 H 1.09000 * 109.47324 * 59.99881 * 17 16 14
41 41 H 1.09004 * 109.47346 * 300.00173 * 17 16 14
42 42 H 0.96997 * 120.00325 * 3.97391 * 20 18 17
43 43 H 1.08004 * 120.03666 * 359.97438 * 22 21 20
44 44 H 1.07999 * 119.96493 * 180.02562 * 23 22 21
45 45 H 1.08002 * 119.92649 * 180.02562 * 24 23 22
46 46 H 1.08003 * 119.96209 * 179.97438 * 25 24 23
47 47 H 1.09002 * 109.46566 * 24.99520 * 27 26 25
48 48 H 1.08999 * 109.47451 * 144.99845 * 27 26 25
49 49 H 1.09002 * 109.46848 * 299.98966 * 28 27 26
50 50 H 1.08999 * 109.47547 * 59.99522 * 28 27 26
51 51 H 1.09002 * 109.46945 * 180.02562 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5050 1.4424 -0.0006
5 6 4.1902 1.5403 1.1810
6 1 3.7181 1.9868 2.0436
7 6 5.4916 1.0658 1.2699
8 7 6.1041 0.6187 0.1942
9 14 6.3736 1.0614 2.9165
10 1 6.1204 -0.2268 3.6105
11 1 7.8329 1.2267 2.6969
12 1 5.8688 2.1810 3.7515
13 6 4.2369 1.3376 -1.2654
14 6 4.4879 -0.1142 -1.5817
15 8 4.0938 -0.9765 -0.8254
16 7 5.1503 -0.4545 -2.7050
17 6 5.3948 -1.8658 -3.0123
18 6 6.1476 -1.9737 -4.3134
19 8 6.4505 -0.9702 -4.9236
20 7 6.4842 -3.1851 -4.7987
21 6 7.2548 -3.2830 -5.9626
22 6 7.1008 -2.3498 -6.9797
23 6 7.8623 -2.4494 -8.1273
24 6 8.7780 -3.4769 -8.2643
25 6 8.9335 -4.4074 -7.2537
26 6 8.1707 -4.3166 -6.1057
27 6 8.3366 -5.3350 -5.0072
28 6 7.2928 -6.4409 -5.1753
29 1 -0.3634 0.5139 -0.8899
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8932 -0.5138 -0.8900
33 1 1.8933 -0.5140 0.8899
34 1 1.6767 1.9563 0.8900
35 1 1.6766 1.9564 -0.8900
36 1 7.0134 0.2868 0.2564
37 1 5.1894 1.8605 -1.1783
38 1 3.6475 1.7870 -2.0645
39 1 5.4653 0.2352 -3.3101
40 1 4.4426 -2.3890 -3.0995
41 1 5.9841 -2.3150 -2.2128
42 1 6.1924 -3.9891 -4.3412
43 1 6.3856 -1.5474 -6.8735
44 1 7.7434 -1.7239 -8.9183
45 1 9.3727 -3.5524 -9.1626
46 1 9.6491 -5.2088 -7.3639
47 1 9.3358 -5.7673 -5.0606
48 1 8.2010 -4.8513 -4.0399
49 1 6.2936 -6.0086 -5.1220
50 1 7.4283 -6.9246 -6.1427
51 1 7.4124 -7.1773 -4.3806
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000122996702.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:14:44
Heat of formation + Delta-G solvation = -24.289389 kcal
Electronic energy + Delta-G solvation = -30842.855685 eV
Core-core repulsion = 26742.955638 eV
Total energy + Delta-G solvation = -4099.900047 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.25 seconds
Orbital eigenvalues (eV)
-40.81720 -38.96007 -37.99903 -35.60688 -35.11594 -34.05052 -33.25411 -32.82332
-30.53771 -30.28297 -29.50706 -28.02281 -25.95339 -25.44731 -24.10614 -23.09021
-22.00713 -21.09216 -20.47673 -20.05757 -19.31662 -18.02300 -17.17269 -16.69343
-16.16097 -15.81663 -15.59616 -15.24296 -14.87847 -14.73267 -14.35486 -14.16108
-13.92722 -13.86162 -13.73911 -13.50899 -13.31117 -13.12020 -12.88517 -12.61993
-12.41615 -12.17988 -12.05358 -11.86134 -11.82251 -11.40608 -11.23743 -11.17522
-11.12954 -10.93860 -10.71986 -10.52974 -10.46111 -10.24551 -9.98129 -9.84160
-9.80214 -9.55022 -8.89285 -8.71352 -8.27668 -8.21593 -8.01776 -6.74277
-5.77935 -3.16773 1.11868 1.26582 2.51943 2.85998 3.41551 3.47701
3.48353 3.65328 4.23648 4.36164 4.49199 4.60965 4.61483 4.64217
4.90828 4.95816 5.06586 5.17562 5.28259 5.37624 5.42582 5.46929
5.57386 5.62649 5.63817 5.68663 5.77273 5.84662 5.86151 5.89532
5.95894 6.15473 6.19449 6.27445 6.32180 6.37398 6.42694 6.46841
6.57514 6.64558 6.70937 6.90745 6.94231 7.14662 7.17036 7.33519
7.45079 7.51770 7.78806 8.00082 8.38760 8.72568 9.23424 9.76860
9.92302 10.33341 11.30705
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012783 B = 0.002502 C = 0.002359
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2189.805713 B =11186.396794 C =11865.743265
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.138 4.138
3 C 0.150 3.850
4 N -0.578 5.578
5 C -0.242 4.242
6 H 0.073 0.927
7 C 0.007 3.993
8 N -0.908 5.908
9 Si 0.910 3.090
10 H -0.289 1.289
11 H -0.293 1.293
12 H -0.281 1.281
13 C 0.171 3.829
14 C 0.537 3.463
15 O -0.537 6.537
16 N -0.740 5.740
17 C 0.114 3.886
18 C 0.512 3.488
19 O -0.515 6.515
20 N -0.674 5.674
21 C 0.152 3.848
22 C -0.119 4.119
23 C -0.107 4.107
24 C -0.136 4.136
25 C -0.102 4.102
26 C -0.110 4.110
27 C -0.088 4.088
28 C -0.148 4.148
29 H 0.043 0.957
30 H 0.040 0.960
31 H 0.045 0.955
32 H 0.059 0.941
33 H 0.060 0.940
34 H 0.046 0.954
35 H 0.031 0.969
36 H 0.253 0.747
37 H 0.111 0.889
38 H 0.028 0.972
39 H 0.398 0.602
40 H 0.085 0.915
41 H 0.090 0.910
42 H 0.411 0.589
43 H 0.141 0.859
44 H 0.124 0.876
45 H 0.120 0.880
46 H 0.123 0.877
47 H 0.075 0.925
48 H 0.072 0.928
49 H 0.053 0.947
50 H 0.058 0.942
51 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.915 -10.725 -15.891 19.267
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.178 4.178
3 C 0.024 3.976
4 N -0.297 5.297
5 C -0.371 4.371
6 H 0.091 0.909
7 C -0.190 4.190
8 N -0.555 5.555
9 Si 0.741 3.259
10 H -0.216 1.216
11 H -0.219 1.219
12 H -0.207 1.207
13 C 0.041 3.959
14 C 0.325 3.675
15 O -0.412 6.412
16 N -0.399 5.399
17 C -0.015 4.015
18 C 0.300 3.700
19 O -0.389 6.389
20 N -0.320 5.320
21 C 0.058 3.942
22 C -0.139 4.139
23 C -0.126 4.126
24 C -0.155 4.155
25 C -0.121 4.121
26 C -0.112 4.112
27 C -0.125 4.125
28 C -0.206 4.206
29 H 0.062 0.938
30 H 0.059 0.941
31 H 0.064 0.936
32 H 0.078 0.922
33 H 0.079 0.921
34 H 0.065 0.935
35 H 0.050 0.950
36 H 0.064 0.936
37 H 0.129 0.871
38 H 0.046 0.954
39 H 0.233 0.767
40 H 0.103 0.897
41 H 0.108 0.892
42 H 0.248 0.752
43 H 0.158 0.842
44 H 0.141 0.859
45 H 0.138 0.862
46 H 0.141 0.859
47 H 0.094 0.906
48 H 0.091 0.909
49 H 0.072 0.928
50 H 0.077 0.923
51 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 1.944 -10.584 -15.616 18.965
hybrid contribution 0.843 -0.573 0.814 1.304
sum 2.787 -11.158 -14.803 18.745
Atomic orbital electron populations
1.21794 0.98292 1.00138 1.00437 1.22148 0.92303 1.00408 1.02904
1.20947 0.84415 0.93918 0.98357 1.43782 0.99645 1.83615 1.02645
1.19244 0.95983 1.32158 0.89722 0.90923 1.24940 0.98146 0.98695
0.97183 1.69571 1.12591 1.46932 1.26375 0.86164 0.78417 0.77691
0.83640 1.21635 1.21927 1.20703 1.20559 0.98308 0.90730 0.86320
1.22040 0.74452 0.93826 0.77232 1.90486 1.52137 1.51753 1.46781
1.46060 1.62532 1.04423 1.26916 1.20746 0.99479 0.88953 0.92311
1.21217 0.78848 0.82605 0.87327 1.90669 1.52870 1.35784 1.59572
1.43557 1.52868 1.09564 1.26011 1.17614 0.93260 0.96709 0.86621
1.21337 1.01052 0.99748 0.91771 1.21056 0.96100 0.98056 0.97372
1.21095 0.99599 0.95608 0.99223 1.20809 0.99097 0.99190 0.92979
1.19692 0.96541 0.97683 0.97329 1.20513 1.00450 0.94813 0.96730
1.21779 0.98520 0.98089 1.02194 0.93821 0.94054 0.93617 0.92181
0.92122 0.93533 0.95035 0.93587 0.87122 0.95417 0.76674 0.89694
0.89186 0.75213 0.84162 0.85850 0.86161 0.85935 0.90612 0.90915
0.92813 0.92319 0.92022
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.40 9.91 37.15 0.37 -2.03 16
2 C -0.14 -2.83 5.29 -26.73 -0.14 -2.98 16
3 C 0.15 3.19 5.71 -4.04 -0.02 3.16 16
4 N -0.58 -14.37 2.11 -174.61 -0.37 -14.74 16
5 C -0.24 -6.58 9.67 -15.06 -0.15 -6.73 16
6 H 0.07 1.94 7.80 -52.49 -0.41 1.54 16
7 C 0.01 0.19 5.38 -17.44 -0.09 0.10 16
8 N -0.91 -25.19 8.10 55.49 0.45 -24.74 16
9 Si 0.91 22.20 29.56 -169.99 -5.02 17.18 16
10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
13 C 0.17 4.00 5.47 -5.20 -0.03 3.97 16
14 C 0.54 12.42 5.40 -10.99 -0.06 12.36 16
15 O -0.54 -14.13 13.63 5.56 0.08 -14.05 16
16 N -0.74 -14.24 5.53 -61.47 -0.34 -14.58 16
17 C 0.11 1.82 6.16 -5.19 -0.03 1.78 16
18 C 0.51 7.42 7.74 -10.99 -0.09 7.33 16
19 O -0.51 -8.78 13.08 5.55 0.07 -8.71 16
20 N -0.67 -7.78 4.79 -9.86 -0.05 -7.83 16
21 C 0.15 1.84 6.29 -83.69 -0.53 1.31 16
22 C -0.12 -1.50 8.70 -39.39 -0.34 -1.85 16
23 C -0.11 -1.13 10.04 -39.61 -0.40 -1.53 16
24 C -0.14 -1.27 10.04 -39.55 -0.40 -1.67 16
25 C -0.10 -0.95 9.67 -39.62 -0.38 -1.33 16
26 C -0.11 -1.13 5.15 -104.43 -0.54 -1.67 16
27 C -0.09 -0.72 5.47 -27.88 -0.15 -0.87 16
28 C -0.15 -1.02 9.82 37.16 0.37 -0.65 16
29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16
30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16
32 H 0.06 1.34 6.40 -51.93 -0.33 1.00 16
33 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16
34 H 0.05 0.96 7.98 -51.93 -0.41 0.54 16
35 H 0.03 0.61 7.96 -51.93 -0.41 0.19 16
36 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16
37 H 0.11 2.80 6.44 -51.93 -0.33 2.47 16
38 H 0.03 0.57 7.94 -51.93 -0.41 0.16 16
39 H 0.40 7.36 7.44 -40.82 -0.30 7.05 16
40 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16
41 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16
42 H 0.41 3.69 7.04 -40.82 -0.29 3.40 16
43 H 0.14 1.95 6.19 -52.48 -0.33 1.63 16
44 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16
45 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16
46 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16
47 H 0.08 0.55 8.05 -51.93 -0.42 0.13 16
48 H 0.07 0.64 7.41 -51.93 -0.38 0.25 16
49 H 0.05 0.37 7.32 -51.93 -0.38 -0.01 16
50 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
51 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
LS Contribution 409.64 15.07 6.17 6.17
Total: -1.00 -32.58 409.64 -9.82 -42.40
By element:
Atomic # 1 Polarization: 18.39 SS G_CDS: -8.20 Total: 10.19 kcal
Atomic # 6 Polarization: 11.32 SS G_CDS: -2.61 Total: 8.71 kcal
Atomic # 7 Polarization: -61.58 SS G_CDS: -0.31 Total: -61.88 kcal
Atomic # 8 Polarization: -22.91 SS G_CDS: 0.15 Total: -22.76 kcal
Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal
Total LS contribution 6.17 Total: 6.17 kcal
Total: -32.58 -9.82 -42.40 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000122996702.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.113 kcal
(2) G-P(sol) polarization free energy of solvation -32.580 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.467 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.289 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.25 seconds