Wall clock time and date at job start Wed Apr 1 2020 05:14:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53001 * 109.47286 * 2 1
4 4 N 1.46505 * 109.46982 * 180.02562 * 3 2 1
5 5 C 1.36935 * 119.99857 * 265.25555 * 4 3 2
6 6 H 1.08000 * 120.00296 * 336.44580 * 5 4 3
7 7 C 1.38806 * 119.99738 * 156.45461 * 5 4 3
8 8 N 1.31613 * 120.00614 * 5.36188 * 7 5 4
9 9 Si 1.86801 * 119.99825 * 185.37171 * 7 5 4
10 10 H 1.48500 * 109.47578 * 89.99438 * 9 7 5
11 11 H 1.48499 * 109.47245 * 209.99414 * 9 7 5
12 12 H 1.48503 * 109.47182 * 329.99369 * 9 7 5
13 13 C 1.46500 * 119.99685 * 85.25512 * 4 3 2
14 14 C 1.50695 * 109.47146 * 269.99800 * 13 4 3
15 15 O 1.21278 * 120.00053 * 0.02562 * 14 13 4
16 16 N 1.34778 * 120.00112 * 180.02562 * 14 13 4
17 17 C 1.46497 * 120.00197 * 179.97438 * 16 14 13
18 18 C 1.50703 * 109.47446 * 179.97438 * 17 16 14
19 19 O 1.21288 * 119.99506 * 0.02562 * 18 17 16
20 20 N 1.34769 * 119.99984 * 180.02562 * 18 17 16
21 21 C 1.39927 * 120.00016 * 183.98079 * 20 18 17
22 22 C 1.38898 * 120.06524 * 325.60103 * 21 20 18
23 23 C 1.38091 * 119.92791 * 180.02562 * 22 21 20
24 24 C 1.38305 * 120.06910 * 359.97434 * 23 22 21
25 25 C 1.38252 * 120.14173 * 0.02903 * 24 23 22
26 26 C 1.38130 * 120.07290 * 0.24921 * 25 24 23
27 27 C 1.50703 * 120.03901 * 179.72748 * 26 25 24
28 28 C 1.53002 * 109.46819 * 265.00382 * 27 26 25
29 29 H 1.08996 * 109.47720 * 59.99254 * 1 2 3
30 30 H 1.08999 * 109.47297 * 179.97438 * 1 2 3
31 31 H 1.09002 * 109.46882 * 299.99692 * 1 2 3
32 32 H 1.09002 * 109.46882 * 240.00308 * 2 1 3
33 33 H 1.09003 * 109.47339 * 120.00745 * 2 1 3
34 34 H 1.09002 * 109.46908 * 60.00324 * 3 2 1
35 35 H 1.09000 * 109.47180 * 300.00243 * 3 2 1
36 36 H 0.97003 * 120.00585 * 180.02562 * 8 7 5
37 37 H 1.09000 * 109.46753 * 149.99639 * 13 4 3
38 38 H 1.08999 * 109.47020 * 29.99991 * 13 4 3
39 39 H 0.97000 * 120.00127 * 359.97438 * 16 14 13
40 40 H 1.09000 * 109.47324 * 59.99881 * 17 16 14
41 41 H 1.09004 * 109.47346 * 300.00173 * 17 16 14
42 42 H 0.96997 * 120.00325 * 3.97391 * 20 18 17
43 43 H 1.08004 * 120.03666 * 359.97438 * 22 21 20
44 44 H 1.07999 * 119.96493 * 180.02562 * 23 22 21
45 45 H 1.08002 * 119.92649 * 180.02562 * 24 23 22
46 46 H 1.08003 * 119.96209 * 179.97438 * 25 24 23
47 47 H 1.09002 * 109.46566 * 24.99520 * 27 26 25
48 48 H 1.08999 * 109.47451 * 144.99845 * 27 26 25
49 49 H 1.09002 * 109.46848 * 299.98966 * 28 27 26
50 50 H 1.08999 * 109.47547 * 59.99522 * 28 27 26
51 51 H 1.09002 * 109.46945 * 180.02562 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5050 1.4424 -0.0006
5 6 4.1902 1.5403 1.1810
6 1 3.7181 1.9868 2.0436
7 6 5.4916 1.0658 1.2699
8 7 6.1041 0.6187 0.1942
9 14 6.3736 1.0614 2.9165
10 1 6.1204 -0.2268 3.6105
11 1 7.8329 1.2267 2.6969
12 1 5.8688 2.1810 3.7515
13 6 4.2369 1.3376 -1.2654
14 6 4.4879 -0.1142 -1.5817
15 8 4.0938 -0.9765 -0.8254
16 7 5.1503 -0.4545 -2.7050
17 6 5.3948 -1.8658 -3.0123
18 6 6.1476 -1.9737 -4.3134
19 8 6.4505 -0.9702 -4.9236
20 7 6.4842 -3.1851 -4.7987
21 6 7.2548 -3.2830 -5.9626
22 6 7.1008 -2.3498 -6.9797
23 6 7.8623 -2.4494 -8.1273
24 6 8.7780 -3.4769 -8.2643
25 6 8.9335 -4.4074 -7.2537
26 6 8.1707 -4.3166 -6.1057
27 6 8.3366 -5.3350 -5.0072
28 6 7.2928 -6.4409 -5.1753
29 1 -0.3634 0.5139 -0.8899
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8932 -0.5138 -0.8900
33 1 1.8933 -0.5140 0.8899
34 1 1.6767 1.9563 0.8900
35 1 1.6766 1.9564 -0.8900
36 1 7.0134 0.2868 0.2564
37 1 5.1894 1.8605 -1.1783
38 1 3.6475 1.7870 -2.0645
39 1 5.4653 0.2352 -3.3101
40 1 4.4426 -2.3890 -3.0995
41 1 5.9841 -2.3150 -2.2128
42 1 6.1924 -3.9891 -4.3412
43 1 6.3856 -1.5474 -6.8735
44 1 7.7434 -1.7239 -8.9183
45 1 9.3727 -3.5524 -9.1626
46 1 9.6491 -5.2088 -7.3639
47 1 9.3358 -5.7673 -5.0606
48 1 8.2010 -4.8513 -4.0399
49 1 6.2936 -6.0086 -5.1220
50 1 7.4283 -6.9246 -6.1427
51 1 7.4124 -7.1773 -4.3806
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000122996702.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:14:43
Heat of formation + Delta-G solvation = -43.539790 kcal
Electronic energy + Delta-G solvation = -30843.690445 eV
Core-core repulsion = 26742.955638 eV
Total energy + Delta-G solvation = -4100.734807 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.37 seconds
Orbital eigenvalues (eV)
-41.84869 -40.23387 -39.49200 -37.37832 -36.06958 -34.96209 -34.76735 -34.59772
-32.39863 -31.27514 -30.36230 -29.46406 -27.49043 -27.22253 -24.78664 -24.20004
-23.61640 -21.89256 -21.75527 -21.52589 -21.04518 -19.21044 -18.67283 -18.19645
-17.24195 -17.08725 -16.92864 -16.78414 -16.36864 -15.97964 -15.82730 -15.51251
-15.23964 -14.95061 -14.82075 -14.59042 -14.55711 -14.47202 -14.13387 -14.11691
-13.70244 -13.47992 -13.17790 -13.10262 -12.89649 -12.80159 -12.76559 -12.59997
-12.48234 -12.23790 -12.07346 -11.91520 -11.87929 -11.83399 -11.70010 -11.40101
-11.24337 -10.97269 -10.70185 -10.18424 -9.70420 -9.68670 -9.10951 -8.69365
-7.84447 -5.23409 0.26860 0.45032 1.38437 1.44772 1.48551 1.54259
1.77981 2.44413 2.58925 2.83172 2.85590 3.39390 3.50288 3.74194
3.79869 3.90441 4.18821 4.29780 4.30575 4.33126 4.38398 4.45117
4.45571 4.46909 4.57226 4.61545 4.66427 4.72803 4.73807 4.84727
4.97773 5.00534 5.03582 5.07917 5.13471 5.24673 5.31324 5.34862
5.37132 5.42481 5.43153 5.51070 5.58771 5.62504 5.64407 5.76625
5.85573 6.09194 6.26240 6.38157 6.91046 7.00317 7.22420 7.84968
8.09018 8.32649 9.20621
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012783 B = 0.002502 C = 0.002359
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2189.805713 B =11186.396794 C =11865.743265
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.125 4.125
3 C 0.146 3.854
4 N -0.594 5.594
5 C -0.252 4.252
6 H 0.071 0.929
7 C -0.041 4.041
8 N -0.919 5.919
9 Si 0.965 3.035
10 H -0.300 1.300
11 H -0.295 1.295
12 H -0.269 1.269
13 C 0.169 3.831
14 C 0.540 3.460
15 O -0.573 6.573
16 N -0.733 5.733
17 C 0.117 3.883
18 C 0.519 3.481
19 O -0.543 6.543
20 N -0.657 5.657
21 C 0.126 3.874
22 C -0.142 4.142
23 C -0.117 4.117
24 C -0.132 4.132
25 C -0.104 4.104
26 C -0.111 4.111
27 C -0.087 4.087
28 C -0.146 4.146
29 H 0.063 0.937
30 H 0.050 0.950
31 H 0.057 0.943
32 H 0.039 0.961
33 H 0.022 0.978
34 H 0.051 0.949
35 H 0.056 0.944
36 H 0.243 0.757
37 H 0.088 0.912
38 H 0.056 0.944
39 H 0.402 0.598
40 H 0.100 0.900
41 H 0.082 0.918
42 H 0.423 0.577
43 H 0.119 0.881
44 H 0.138 0.862
45 H 0.149 0.851
46 H 0.151 0.849
47 H 0.089 0.911
48 H 0.064 0.936
49 H 0.049 0.951
50 H 0.063 0.937
51 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.002 -11.858 -17.085 20.893
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.165 4.165
3 C 0.021 3.979
4 N -0.314 5.314
5 C -0.382 4.382
6 H 0.089 0.911
7 C -0.236 4.236
8 N -0.566 5.566
9 Si 0.795 3.205
10 H -0.228 1.228
11 H -0.222 1.222
12 H -0.194 1.194
13 C 0.039 3.961
14 C 0.328 3.672
15 O -0.450 6.450
16 N -0.391 5.391
17 C -0.011 4.011
18 C 0.307 3.693
19 O -0.420 6.420
20 N -0.303 5.303
21 C 0.033 3.967
22 C -0.162 4.162
23 C -0.135 4.135
24 C -0.150 4.150
25 C -0.122 4.122
26 C -0.113 4.113
27 C -0.125 4.125
28 C -0.203 4.203
29 H 0.082 0.918
30 H 0.069 0.931
31 H 0.076 0.924
32 H 0.058 0.942
33 H 0.041 0.959
34 H 0.069 0.931
35 H 0.074 0.926
36 H 0.053 0.947
37 H 0.106 0.894
38 H 0.074 0.926
39 H 0.238 0.762
40 H 0.118 0.882
41 H 0.100 0.900
42 H 0.262 0.738
43 H 0.137 0.863
44 H 0.156 0.844
45 H 0.167 0.833
46 H 0.168 0.832
47 H 0.108 0.892
48 H 0.082 0.918
49 H 0.069 0.931
50 H 0.082 0.918
51 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 2.026 -11.739 -16.849 20.635
hybrid contribution 0.831 -0.250 1.070 1.377
sum 2.858 -11.989 -15.779 20.022
Atomic orbital electron populations
1.21690 0.94529 1.01373 1.02023 1.21935 0.95472 0.99134 0.99996
1.21113 0.82556 0.94542 0.99692 1.43978 1.01143 1.83924 1.02376
1.19468 0.96302 1.31803 0.90602 0.91093 1.25571 0.99069 0.99264
0.99700 1.69754 1.12011 1.47588 1.27267 0.85302 0.77227 0.77258
0.80747 1.22776 1.22151 1.19413 1.20523 0.97711 0.91047 0.86817
1.21868 0.74382 0.93436 0.77548 1.90464 1.53807 1.52560 1.48212
1.45820 1.61254 1.06167 1.25853 1.20782 1.00434 0.86946 0.92985
1.20835 0.78653 0.83180 0.86621 1.90664 1.54223 1.36928 1.60203
1.43300 1.52150 1.08959 1.25886 1.17811 0.94545 0.97845 0.86525
1.21333 1.01807 0.99828 0.93243 1.21294 0.96126 0.99016 0.97079
1.21465 0.98819 0.94579 1.00163 1.21208 0.98991 0.99731 0.92320
1.19966 0.95774 0.97251 0.98304 1.20564 1.01717 0.94662 0.95520
1.21765 0.97849 0.97801 1.02900 0.91809 0.93063 0.92400 0.94202
0.95923 0.93099 0.92576 0.94686 0.89430 0.92589 0.76205 0.88204
0.90026 0.73811 0.86294 0.84412 0.83327 0.83167 0.89201 0.91784
0.93147 0.91798 0.90985
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.17 9.91 71.98 0.71 -3.46 16
2 C -0.13 -5.13 5.29 30.59 0.16 -4.97 16
3 C 0.15 6.11 5.71 86.38 0.49 6.60 16
4 N -0.59 -29.77 2.11 -706.34 -1.49 -31.26 16
5 C -0.25 -13.87 9.67 84.03 0.81 -13.05 16
6 H 0.07 3.83 7.80 -2.91 -0.02 3.81 16
7 C -0.04 -2.31 5.38 84.86 0.46 -1.85 16
8 N -0.92 -52.17 8.10 21.65 0.18 -51.99 16
9 Si 0.96 46.37 29.56 68.60 2.03 48.40 16
10 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16
11 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16
12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16
13 C 0.17 7.99 5.47 85.63 0.47 8.46 16
14 C 0.54 25.43 5.40 87.66 0.47 25.91 16
15 O -0.57 -30.85 13.63 -3.02 -0.04 -30.89 16
16 N -0.73 -28.81 5.53 -466.79 -2.58 -31.39 16
17 C 0.12 3.79 6.16 85.63 0.53 4.32 16
18 C 0.52 15.35 7.74 87.66 0.68 16.02 16
19 O -0.54 -19.12 13.08 -3.06 -0.04 -19.16 16
20 N -0.66 -15.19 4.79 -303.51 -1.45 -16.65 16
21 C 0.13 3.01 6.29 38.15 0.24 3.25 16
22 C -0.14 -3.63 8.70 22.39 0.19 -3.43 16
23 C -0.12 -2.36 10.04 22.25 0.22 -2.13 16
24 C -0.13 -2.14 10.04 22.29 0.22 -1.92 16
25 C -0.10 -1.67 9.67 22.25 0.22 -1.45 16
26 C -0.11 -2.10 5.15 -19.74 -0.10 -2.20 16
27 C -0.09 -1.27 5.47 29.85 0.16 -1.11 16
28 C -0.15 -1.72 9.82 71.98 0.71 -1.01 16
29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16
30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16
31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16
32 H 0.04 1.77 6.40 -2.39 -0.02 1.76 16
33 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16
34 H 0.05 2.05 7.98 -2.39 -0.02 2.03 16
35 H 0.06 2.05 7.96 -2.39 -0.02 2.03 16
36 H 0.24 13.90 8.31 -92.71 -0.77 13.13 16
37 H 0.09 4.55 6.44 -2.39 -0.02 4.53 16
38 H 0.06 2.28 7.94 -2.39 -0.02 2.26 16
39 H 0.40 15.21 7.44 -92.71 -0.69 14.52 16
40 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16
41 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16
42 H 0.42 7.46 7.04 -92.71 -0.65 6.81 16
43 H 0.12 3.50 6.19 -2.91 -0.02 3.48 16
44 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16
45 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16
46 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16
47 H 0.09 1.07 8.05 -2.39 -0.02 1.05 16
48 H 0.06 1.05 7.41 -2.39 -0.02 1.03 16
49 H 0.05 0.62 7.32 -2.39 -0.02 0.60 16
50 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16
51 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16
Total: -1.00 -71.83 409.64 2.85 -68.98
By element:
Atomic # 1 Polarization: 36.39 SS G_CDS: -0.40 Total: 35.99 kcal
Atomic # 6 Polarization: 21.32 SS G_CDS: 6.65 Total: 27.97 kcal
Atomic # 7 Polarization: -125.94 SS G_CDS: -5.35 Total: -131.28 kcal
Atomic # 8 Polarization: -49.97 SS G_CDS: -0.08 Total: -50.06 kcal
Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal
Total: -71.83 2.85 -68.98 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000122996702.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.442 kcal
(2) G-P(sol) polarization free energy of solvation -71.832 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.390 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.981 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.540 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.37 seconds