Wall clock time and date at job start Wed Apr 1 2020 05:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 N 1.46499 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.34779 * 119.99872 * 180.02562 * 4 3 2 6 6 O 1.21553 * 119.99965 * 0.02562 * 5 4 3 7 7 C 1.47846 * 120.00003 * 180.02562 * 5 4 3 8 8 C 1.39601 * 120.14413 * 359.72515 * 7 5 4 9 9 C 1.37935 * 119.85388 * 179.74633 * 8 7 5 10 10 C 1.38388 * 120.14293 * 0.53136 * 9 8 7 11 11 C 1.38336 * 120.29208 * 359.74017 * 10 9 8 12 12 C 1.50697 * 119.92692 * 179.97438 * 11 10 9 13 13 N 1.46507 * 109.47259 * 269.97900 * 12 11 10 14 14 C 1.34771 * 120.00235 * 179.97438 * 13 12 11 15 15 O 1.21597 * 119.99886 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00561 * 180.02562 * 14 13 12 17 17 C 1.46490 * 120.00413 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.47178 * 180.02562 * 17 16 14 19 19 C 1.53004 * 109.47237 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.46907 * 180.02562 * 19 18 17 21 21 H 1.07990 * 120.00569 * 359.97438 * 20 19 18 22 22 C 1.37885 * 119.99800 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00010 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99977 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47250 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46836 * 120.00539 * 24 22 20 27 27 H 1.48505 * 109.47244 * 240.00202 * 24 22 20 28 28 C 1.37981 * 120.14765 * 359.97438 * 11 10 9 29 29 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 30 30 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 32 32 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 33 33 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 34 34 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 35 35 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 36 36 H 0.97000 * 120.00420 * 0.02562 * 4 3 2 37 37 H 1.08003 * 120.07015 * 0.02562 * 8 7 5 38 38 H 1.07999 * 119.93131 * 180.25358 * 9 8 7 39 39 H 1.07994 * 119.85229 * 179.76593 * 10 9 8 40 40 H 1.08996 * 109.47156 * 29.98131 * 12 11 10 41 41 H 1.09001 * 109.47287 * 149.98608 * 12 11 10 42 42 H 0.97000 * 119.99658 * 0.02562 * 13 12 11 43 43 H 0.97007 * 119.99541 * 0.02562 * 16 14 13 44 44 H 1.08998 * 109.47454 * 300.00132 * 17 16 14 45 45 H 1.08997 * 109.47236 * 60.00224 * 17 16 14 46 46 H 1.09005 * 109.46986 * 299.99893 * 18 17 16 47 47 H 1.08997 * 109.47118 * 59.99829 * 18 17 16 48 48 H 1.09005 * 109.46637 * 299.99606 * 19 18 17 49 49 H 1.08997 * 109.47615 * 59.99632 * 19 18 17 50 50 H 0.97003 * 120.00216 * 179.97438 * 23 22 20 51 51 H 1.07994 * 120.07788 * 180.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1788 2.6097 -0.0002 6 8 3.5710 3.6624 0.0011 7 6 5.6573 2.6098 -0.0014 8 6 6.3583 1.4026 0.0028 9 6 7.7377 1.4095 -0.0036 10 6 8.4265 2.6098 -0.0031 11 6 7.7379 3.8096 -0.0016 12 6 8.4964 5.1118 -0.0006 13 7 8.7422 5.5326 1.3810 14 6 9.4096 6.6771 1.6283 15 8 9.8080 7.3602 0.7046 16 7 9.6362 7.0640 2.8992 17 6 10.3621 8.3077 3.1679 18 6 10.4828 8.5115 4.6795 19 6 11.2404 9.8108 4.9602 20 6 11.3597 10.0111 6.4490 21 1 10.9372 9.2846 7.1272 22 6 12.0085 11.1219 6.9453 23 7 12.5226 12.0069 6.1195 24 14 12.1559 11.3706 8.7908 25 1 11.4986 10.2413 9.4965 26 1 13.5906 11.4230 9.1702 27 1 11.4960 12.6449 9.1729 28 6 6.3581 3.8166 -0.0011 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6765 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.9900 0.6025 -0.0013 37 1 5.8218 0.4652 0.0066 38 1 8.2813 0.4763 -0.0045 39 1 9.5065 2.6098 -0.0044 40 1 9.4482 4.9782 -0.5146 41 1 7.9101 5.8741 -0.5136 42 1 8.4253 4.9871 2.1178 43 1 9.3193 6.5185 3.6361 44 1 11.3581 8.2493 2.7289 45 1 9.8207 9.1463 2.7300 46 1 9.4869 8.5698 5.1189 47 1 11.0244 7.6729 5.1170 48 1 12.2362 9.7529 4.5207 49 1 10.6984 10.6492 4.5227 50 1 12.9787 12.7886 6.4686 51 1 5.8217 4.7539 -0.0004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171740231.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:32 Heat of formation + Delta-G solvation = -68.379290 kcal Electronic energy + Delta-G solvation = -28111.583738 eV Core-core repulsion = 24009.771810 eV Total energy + Delta-G solvation = -4101.811929 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.78093 -39.83543 -38.91253 -36.33477 -35.70689 -34.82365 -33.39121 -33.22985 -31.83935 -31.58043 -30.82641 -27.32809 -26.87503 -25.76833 -24.01100 -23.02253 -22.31240 -22.15555 -20.82868 -20.60960 -20.35619 -18.53524 -17.77641 -16.85487 -16.56768 -16.49088 -16.34091 -15.96649 -15.77112 -15.19936 -15.09489 -14.98655 -14.51568 -14.26379 -14.19822 -14.09414 -14.00477 -13.58667 -13.28416 -13.12442 -12.83011 -12.73530 -12.65946 -12.26945 -12.11462 -11.78333 -11.77270 -11.65233 -11.54428 -11.51859 -10.90302 -10.69908 -10.54813 -10.40901 -10.16814 -9.83363 -9.69383 -9.50436 -9.42361 -9.33211 -9.20723 -9.08518 -8.57467 -8.35340 -5.99828 -4.02726 0.32126 0.75582 2.34094 2.59639 2.90638 3.31341 3.38768 3.39375 3.41346 3.42771 4.07996 4.14635 4.24345 4.34314 4.34394 4.43198 4.49117 4.51839 4.61671 4.76769 4.86346 5.00605 5.01394 5.07680 5.21127 5.28832 5.36087 5.40136 5.47779 5.49030 5.53638 5.59084 5.73746 5.75331 5.81357 5.85082 5.87883 6.05107 6.21746 6.31865 6.40456 6.56257 6.65808 6.83348 6.94232 7.05356 7.09561 7.66698 7.71270 7.79528 7.99434 8.16900 8.40475 8.77221 9.04281 9.61403 11.11533 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.001387 C = 0.001314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.115572 B =20181.726798 C =21308.236536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.729 5.729 5 C 0.558 3.442 6 O -0.532 6.532 7 C -0.140 4.140 8 C -0.081 4.081 9 C -0.128 4.128 10 C -0.071 4.071 11 C -0.111 4.111 12 C 0.181 3.819 13 N -0.749 5.749 14 C 0.700 3.300 15 O -0.592 6.592 16 N -0.741 5.741 17 C 0.135 3.865 18 C -0.120 4.120 19 C 0.023 3.977 20 C -0.522 4.522 21 H 0.056 0.944 22 C 0.057 3.943 23 N -0.893 5.893 24 Si 0.892 3.108 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 C -0.038 4.038 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.400 0.600 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.395 0.605 43 H 0.394 0.606 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.053 0.947 48 H 0.019 0.981 49 H 0.019 0.981 50 H 0.260 0.740 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.160 -31.855 -15.432 40.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.382 5.382 5 C 0.346 3.654 6 O -0.409 6.409 7 C -0.143 4.143 8 C -0.100 4.100 9 C -0.146 4.146 10 C -0.090 4.090 11 C -0.112 4.112 12 C 0.057 3.943 13 N -0.406 5.406 14 C 0.400 3.600 15 O -0.471 6.471 16 N -0.395 5.395 17 C 0.012 3.988 18 C -0.159 4.159 19 C -0.014 4.014 20 C -0.560 4.560 21 H 0.074 0.926 22 C -0.144 4.144 23 N -0.533 5.533 24 Si 0.720 3.280 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.210 1.210 28 C -0.058 4.058 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.235 0.765 37 H 0.143 0.857 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.229 0.771 43 H 0.227 0.773 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.038 0.962 49 H 0.038 0.962 50 H 0.070 0.930 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.144 -30.243 -16.303 39.331 hybrid contribution 0.056 -0.820 1.713 1.900 sum -19.087 -31.063 -14.590 39.270 Atomic orbital electron populations 1.21681 0.94321 1.02314 1.02516 1.21743 0.97242 0.95643 1.02778 1.21458 0.78989 0.97379 1.02825 1.45919 1.07592 1.08560 1.76136 1.18304 0.87229 0.83729 0.76177 1.90812 1.69869 1.31108 1.49101 1.19883 0.92608 0.94480 1.07301 1.21308 0.94737 0.96726 0.97228 1.21119 0.93860 0.98478 1.01142 1.21397 1.00657 0.91645 0.95327 1.19940 0.93433 0.95218 1.02582 1.19975 0.99414 0.91759 0.83186 1.45136 1.62382 1.24956 1.08094 1.16000 0.79025 0.81013 0.83940 1.90929 1.57145 1.55499 1.43489 1.45381 1.61555 1.27208 1.05365 1.21513 0.95653 0.83640 0.98020 1.21894 1.01107 1.01604 0.91250 1.19034 0.95226 0.90457 0.96706 1.21247 1.35832 1.06936 0.91977 0.92610 1.25026 0.95553 0.96019 0.97839 1.69977 1.37456 1.11663 1.34164 0.86537 0.77730 0.78050 0.85670 1.19774 1.21020 1.21009 1.21263 0.93173 0.98039 0.93283 0.92243 0.92061 0.92213 0.91253 0.91215 0.91221 0.91173 0.76503 0.85698 0.85021 0.85000 0.90469 0.90496 0.77108 0.77312 0.91943 0.91923 0.92766 0.92784 0.96237 0.96214 0.92996 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.42 9.91 37.16 0.37 -0.06 16 2 C -0.14 -0.38 6.05 -26.73 -0.16 -0.55 16 3 C 0.12 0.63 5.67 -4.04 -0.02 0.61 16 4 N -0.73 -4.19 5.51 -61.25 -0.34 -4.53 16 5 C 0.56 5.14 7.77 -12.33 -0.10 5.04 16 6 O -0.53 -7.08 16.35 5.32 0.09 -7.00 16 7 C -0.14 -1.09 5.87 -104.96 -0.62 -1.71 16 8 C -0.08 -0.41 9.54 -39.18 -0.37 -0.79 16 9 C -0.13 -0.63 10.03 -39.64 -0.40 -1.02 16 10 C -0.07 -0.44 9.69 -39.49 -0.38 -0.82 16 11 C -0.11 -0.87 5.24 -104.68 -0.55 -1.42 16 12 C 0.18 1.77 5.79 -5.19 -0.03 1.74 16 13 N -0.75 -8.23 5.55 -66.41 -0.37 -8.60 16 14 C 0.70 10.85 8.57 -86.93 -0.74 10.10 16 15 O -0.59 -11.75 16.34 5.28 0.09 -11.67 16 16 N -0.74 -10.98 5.56 -65.23 -0.36 -11.34 16 17 C 0.13 2.45 5.67 -4.05 -0.02 2.43 16 18 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 19 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 20 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 21 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 23 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 24 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 C -0.04 -0.33 9.24 -39.18 -0.36 -0.70 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.40 1.12 6.51 -40.82 -0.27 0.86 16 37 H 0.13 0.26 6.41 -52.48 -0.34 -0.07 16 38 H 0.13 0.35 8.06 -52.49 -0.42 -0.08 16 39 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 41 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 42 H 0.40 3.39 8.48 -40.82 -0.35 3.05 16 43 H 0.39 4.67 8.49 -40.82 -0.35 4.32 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 51 H 0.14 1.39 7.65 -52.49 -0.40 0.99 16 LS Contribution 429.04 15.07 6.47 6.47 Total: -1.00 -36.69 429.04 -11.21 -47.90 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -8.42 Total: 1.10 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -4.08 Total: -2.67 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -0.33 Total: -50.73 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: 0.17 Total: -18.66 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.47 Total: 6.47 kcal Total: -36.69 -11.21 -47.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171740231.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.477 kcal (2) G-P(sol) polarization free energy of solvation -36.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds