Wall clock time and date at job start Wed Apr 1 2020 05:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 N 1.46499 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.34779 * 119.99872 * 180.02562 * 4 3 2 6 6 O 1.21553 * 119.99965 * 0.02562 * 5 4 3 7 7 C 1.47846 * 120.00003 * 180.02562 * 5 4 3 8 8 C 1.39601 * 120.14413 * 359.72515 * 7 5 4 9 9 C 1.37935 * 119.85388 * 179.74633 * 8 7 5 10 10 C 1.38388 * 120.14293 * 0.53136 * 9 8 7 11 11 C 1.38336 * 120.29208 * 359.74017 * 10 9 8 12 12 C 1.50697 * 119.92692 * 179.97438 * 11 10 9 13 13 N 1.46507 * 109.47259 * 269.97900 * 12 11 10 14 14 C 1.34771 * 120.00235 * 179.97438 * 13 12 11 15 15 O 1.21597 * 119.99886 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00561 * 180.02562 * 14 13 12 17 17 C 1.46490 * 120.00413 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.47178 * 180.02562 * 17 16 14 19 19 C 1.53004 * 109.47237 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.46907 * 180.02562 * 19 18 17 21 21 H 1.07990 * 120.00569 * 359.97438 * 20 19 18 22 22 C 1.37885 * 119.99800 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00010 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99977 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47250 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46836 * 120.00539 * 24 22 20 27 27 H 1.48505 * 109.47244 * 240.00202 * 24 22 20 28 28 C 1.37981 * 120.14765 * 359.97438 * 11 10 9 29 29 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 30 30 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 32 32 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 33 33 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 34 34 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 35 35 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 36 36 H 0.97000 * 120.00420 * 0.02562 * 4 3 2 37 37 H 1.08003 * 120.07015 * 0.02562 * 8 7 5 38 38 H 1.07999 * 119.93131 * 180.25358 * 9 8 7 39 39 H 1.07994 * 119.85229 * 179.76593 * 10 9 8 40 40 H 1.08996 * 109.47156 * 29.98131 * 12 11 10 41 41 H 1.09001 * 109.47287 * 149.98608 * 12 11 10 42 42 H 0.97000 * 119.99658 * 0.02562 * 13 12 11 43 43 H 0.97007 * 119.99541 * 0.02562 * 16 14 13 44 44 H 1.08998 * 109.47454 * 300.00132 * 17 16 14 45 45 H 1.08997 * 109.47236 * 60.00224 * 17 16 14 46 46 H 1.09005 * 109.46986 * 299.99893 * 18 17 16 47 47 H 1.08997 * 109.47118 * 59.99829 * 18 17 16 48 48 H 1.09005 * 109.46637 * 299.99606 * 19 18 17 49 49 H 1.08997 * 109.47615 * 59.99632 * 19 18 17 50 50 H 0.97003 * 120.00216 * 179.97438 * 23 22 20 51 51 H 1.07994 * 120.07788 * 180.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1788 2.6097 -0.0002 6 8 3.5710 3.6624 0.0011 7 6 5.6573 2.6098 -0.0014 8 6 6.3583 1.4026 0.0028 9 6 7.7377 1.4095 -0.0036 10 6 8.4265 2.6098 -0.0031 11 6 7.7379 3.8096 -0.0016 12 6 8.4964 5.1118 -0.0006 13 7 8.7422 5.5326 1.3810 14 6 9.4096 6.6771 1.6283 15 8 9.8080 7.3602 0.7046 16 7 9.6362 7.0640 2.8992 17 6 10.3621 8.3077 3.1679 18 6 10.4828 8.5115 4.6795 19 6 11.2404 9.8108 4.9602 20 6 11.3597 10.0111 6.4490 21 1 10.9372 9.2846 7.1272 22 6 12.0085 11.1219 6.9453 23 7 12.5226 12.0069 6.1195 24 14 12.1559 11.3706 8.7908 25 1 11.4986 10.2413 9.4965 26 1 13.5906 11.4230 9.1702 27 1 11.4960 12.6449 9.1729 28 6 6.3581 3.8166 -0.0011 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6765 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.9900 0.6025 -0.0013 37 1 5.8218 0.4652 0.0066 38 1 8.2813 0.4763 -0.0045 39 1 9.5065 2.6098 -0.0044 40 1 9.4482 4.9782 -0.5146 41 1 7.9101 5.8741 -0.5136 42 1 8.4253 4.9871 2.1178 43 1 9.3193 6.5185 3.6361 44 1 11.3581 8.2493 2.7289 45 1 9.8207 9.1463 2.7300 46 1 9.4869 8.5698 5.1189 47 1 11.0244 7.6729 5.1170 48 1 12.2362 9.7529 4.5207 49 1 10.6984 10.6492 4.5227 50 1 12.9787 12.7886 6.4686 51 1 5.8217 4.7539 -0.0004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171740231.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:31 Heat of formation + Delta-G solvation = -94.322308 kcal Electronic energy + Delta-G solvation = -28112.708712 eV Core-core repulsion = 24009.771810 eV Total energy + Delta-G solvation = -4102.936902 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.44768 -40.97518 -39.59494 -37.11515 -36.86319 -35.96303 -35.18215 -33.87701 -33.12890 -32.08439 -32.04788 -28.74549 -27.54759 -26.84000 -24.82017 -24.48412 -22.87440 -22.55859 -22.30153 -21.88143 -21.23384 -19.50031 -18.68391 -18.43457 -17.47594 -17.30724 -17.02091 -16.85745 -16.80440 -16.48826 -16.10077 -15.79294 -15.55218 -15.47998 -15.36698 -15.15425 -14.75665 -14.28009 -14.03786 -13.90500 -13.78765 -13.71613 -13.62210 -13.36192 -13.29011 -12.94613 -12.76935 -12.66556 -12.53888 -12.33007 -12.14031 -12.02712 -11.76816 -11.68160 -11.66596 -11.33614 -11.15282 -11.11880 -10.55223 -10.42330 -10.31394 -9.96950 -9.90775 -9.78635 -8.18706 -6.30124 -0.21973 0.21686 1.42129 1.42381 1.55537 1.63246 1.89423 2.07138 2.13092 2.42658 2.81255 3.15251 3.39671 3.52914 3.61969 3.87140 3.89359 4.05947 4.08026 4.17931 4.23422 4.25644 4.26539 4.33545 4.55183 4.57441 4.64281 4.65301 4.74082 4.80487 4.87296 4.96453 4.97137 5.00469 5.14280 5.17888 5.23190 5.23898 5.27630 5.35663 5.40021 5.43820 5.47702 5.49003 5.55272 5.72322 5.84139 5.85388 5.98596 6.23748 6.45048 6.87385 7.08642 7.12101 7.39505 7.55871 8.93729 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.001387 C = 0.001314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.115572 B =20181.726798 C =21308.236536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C 0.114 3.886 4 N -0.711 5.711 5 C 0.552 3.448 6 O -0.586 6.586 7 C -0.154 4.154 8 C -0.066 4.066 9 C -0.120 4.120 10 C -0.068 4.068 11 C -0.115 4.115 12 C 0.182 3.818 13 N -0.728 5.728 14 C 0.698 3.302 15 O -0.639 6.639 16 N -0.730 5.730 17 C 0.149 3.851 18 C -0.101 4.101 19 C 0.023 3.977 20 C -0.540 4.540 21 H 0.067 0.933 22 C -0.003 4.003 23 N -0.935 5.935 24 Si 0.967 3.033 25 H -0.258 1.258 26 H -0.279 1.279 27 H -0.281 1.281 28 C -0.055 4.055 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.417 0.583 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.147 0.853 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.410 0.590 43 H 0.412 0.588 44 H 0.049 0.951 45 H 0.045 0.955 46 H 0.066 0.934 47 H 0.069 0.931 48 H -0.007 1.007 49 H -0.009 1.009 50 H 0.263 0.737 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.344 -36.108 -14.197 43.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.009 4.009 4 N -0.364 5.364 5 C 0.341 3.659 6 O -0.468 6.468 7 C -0.157 4.157 8 C -0.085 4.085 9 C -0.137 4.137 10 C -0.087 4.087 11 C -0.116 4.116 12 C 0.058 3.942 13 N -0.385 5.385 14 C 0.398 3.602 15 O -0.521 6.521 16 N -0.385 5.385 17 C 0.025 3.975 18 C -0.139 4.139 19 C -0.015 4.015 20 C -0.578 4.578 21 H 0.085 0.915 22 C -0.200 4.200 23 N -0.576 5.576 24 Si 0.792 3.208 25 H -0.182 1.182 26 H -0.205 1.205 27 H -0.207 1.207 28 C -0.075 4.075 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.255 0.745 37 H 0.179 0.821 38 H 0.184 0.816 39 H 0.165 0.835 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.247 0.753 43 H 0.248 0.752 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.012 0.988 49 H 0.010 0.990 50 H 0.072 0.928 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.364 -34.617 -15.044 42.422 hybrid contribution 0.079 0.428 1.258 1.331 sum -19.285 -34.189 -13.787 41.603 Atomic orbital electron populations 1.21706 0.94411 1.02842 1.02105 1.21689 0.97049 0.93616 1.03977 1.21509 0.78743 0.99150 1.01510 1.45811 1.07810 1.08386 1.74344 1.18650 0.87980 0.83780 0.75516 1.90783 1.70955 1.33118 1.51918 1.19859 0.91833 0.95289 1.08707 1.21679 0.95128 0.96804 0.94851 1.21512 0.93744 0.99183 0.99276 1.21630 1.01517 0.91319 0.94184 1.19654 0.92707 0.94886 1.04325 1.19988 0.99488 0.92579 0.82130 1.44981 1.60679 1.23451 1.09350 1.16152 0.79075 0.81675 0.83332 1.90900 1.59133 1.57208 1.44862 1.45026 1.61184 1.26319 1.06007 1.21081 0.95154 0.84646 0.96642 1.21593 1.00956 0.98929 0.92371 1.18948 0.94287 0.92574 0.95657 1.21714 1.35667 1.07269 0.93187 0.91523 1.26015 0.95102 0.95712 1.03188 1.70121 1.38412 1.12362 1.36670 0.85369 0.77889 0.78330 0.79259 1.18179 1.20511 1.20663 1.21129 0.93668 0.97789 0.94897 0.92662 0.90994 0.92747 0.89926 0.90003 0.92574 0.92657 0.74466 0.82138 0.81589 0.83488 0.90321 0.92261 0.75336 0.75205 0.93283 0.93689 0.91530 0.91194 0.98818 0.99023 0.92827 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 71.98 0.71 0.03 16 2 C -0.13 -0.47 6.05 30.59 0.19 -0.28 16 3 C 0.11 1.19 5.67 86.38 0.49 1.68 16 4 N -0.71 -7.24 5.51 -465.97 -2.57 -9.81 16 5 C 0.55 10.20 7.77 86.79 0.67 10.87 16 6 O -0.59 -16.74 16.35 -3.88 -0.06 -16.81 16 7 C -0.15 -2.26 5.87 -20.09 -0.12 -2.38 16 8 C -0.07 -0.44 9.54 22.53 0.21 -0.22 16 9 C -0.12 -0.66 10.03 22.23 0.22 -0.43 16 10 C -0.07 -0.64 9.69 22.33 0.22 -0.43 16 11 C -0.12 -1.72 5.24 -19.90 -0.10 -1.82 16 12 C 0.18 3.60 5.79 85.63 0.50 4.10 16 13 N -0.73 -15.64 5.55 -482.29 -2.68 -18.32 16 14 C 0.70 21.65 8.57 179.06 1.53 23.18 16 15 O -0.64 -26.10 16.34 -4.02 -0.07 -26.17 16 16 N -0.73 -21.16 5.56 -478.56 -2.66 -23.82 16 17 C 0.15 5.50 5.67 86.38 0.49 5.99 16 18 C -0.10 -3.95 5.27 30.60 0.16 -3.79 16 19 C 0.02 1.22 4.97 29.85 0.15 1.37 16 20 C -0.54 -30.46 9.11 25.60 0.23 -30.23 16 21 H 0.07 3.53 7.74 -2.92 -0.02 3.51 16 22 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 23 N -0.94 -57.68 13.29 21.45 0.28 -57.40 16 24 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 25 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 27 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 28 C -0.06 -0.99 9.24 22.53 0.21 -0.78 16 29 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.42 1.07 6.51 -92.71 -0.60 0.47 16 37 H 0.16 -0.15 6.41 -2.91 -0.02 -0.17 16 38 H 0.17 -0.12 8.06 -2.91 -0.02 -0.15 16 39 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 40 H 0.08 1.55 8.08 -2.39 -0.02 1.53 16 41 H 0.06 1.39 8.08 -2.39 -0.02 1.37 16 42 H 0.41 6.45 8.48 -92.71 -0.79 5.67 16 43 H 0.41 8.98 8.49 -92.70 -0.79 8.20 16 44 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.04 1.81 8.14 -2.39 -0.02 1.80 16 46 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 47 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 48 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 49 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 50 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 51 H 0.11 2.57 7.65 -2.91 -0.02 2.55 16 Total: -1.00 -83.72 429.04 -0.72 -84.44 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -1.23 Total: 14.53 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 6.23 Total: 7.17 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -7.62 Total: -109.35 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -0.13 Total: -42.97 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -83.72 -0.72 -84.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171740231.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.882 kcal (2) G-P(sol) polarization free energy of solvation -83.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds