Wall clock time and date at job start Wed Apr 1 2020 04:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46895 * 2 1 4 4 N 1.46497 * 109.47023 * 240.00478 * 2 1 3 5 5 C 1.46500 * 120.00227 * 65.78611 * 4 2 1 6 6 C 1.39671 * 120.00033 * 245.79059 * 4 2 1 7 7 C 1.38996 * 120.03621 * 5.61289 * 6 4 2 8 8 C 1.38141 * 120.07707 * 179.72248 * 7 6 4 9 9 C 1.38171 * 120.14879 * 0.56146 * 8 7 6 10 10 C 1.38965 * 120.07232 * 359.71926 * 9 8 7 11 11 N 1.39725 * 120.03797 * 180.02562 * 10 9 8 12 12 C 1.34775 * 119.99914 * 326.66581 * 11 10 9 13 13 O 1.21377 * 120.00131 * 354.77321 * 12 11 10 14 14 C 1.49352 * 119.99859 * 174.76417 * 12 11 10 15 15 O 1.21358 * 120.00201 * 0.02562 * 14 12 11 16 16 N 1.34775 * 119.99860 * 180.02562 * 14 12 11 17 17 C 1.46497 * 120.00193 * 179.97438 * 16 14 12 18 18 C 1.53004 * 109.47618 * 179.97438 * 17 16 14 19 19 C 1.52995 * 109.47203 * 180.02562 * 18 17 16 20 20 C 1.50702 * 109.47063 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99976 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99906 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99594 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00211 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47263 * 90.00050 * 24 22 20 26 26 H 1.48503 * 109.46891 * 209.99586 * 24 22 20 27 27 H 1.48500 * 109.46965 * 329.99507 * 24 22 20 28 28 C 1.38752 * 120.03902 * 185.89603 * 6 4 2 29 29 H 1.09001 * 109.47398 * 59.99747 * 1 2 3 30 30 H 1.08996 * 109.47353 * 299.99662 * 1 2 3 31 31 H 1.09002 * 109.47262 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47223 * 120.00401 * 2 1 3 33 33 H 1.09000 * 109.46817 * 60.00545 * 3 2 1 34 34 H 1.09000 * 109.46843 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47304 * 300.00311 * 3 2 1 36 36 H 1.09001 * 109.47304 * 90.00285 * 5 4 2 37 37 H 1.09000 * 109.47293 * 209.99842 * 5 4 2 38 38 H 1.09001 * 109.47303 * 329.99787 * 5 4 2 39 39 H 1.08001 * 119.95902 * 0.02562 * 7 6 4 40 40 H 1.07997 * 119.92921 * 180.25476 * 8 7 6 41 41 H 1.08003 * 119.96339 * 179.74478 * 9 8 7 42 42 H 0.97002 * 120.00025 * 146.67639 * 11 10 9 43 43 H 0.97001 * 120.00451 * 359.97438 * 16 14 12 44 44 H 1.09004 * 109.47273 * 300.00423 * 17 16 14 45 45 H 1.09009 * 109.46969 * 60.00073 * 17 16 14 46 46 H 1.08999 * 109.46833 * 300.00223 * 18 17 16 47 47 H 1.08996 * 109.46679 * 60.00055 * 18 17 16 48 48 H 1.08999 * 109.47276 * 299.99790 * 19 18 17 49 49 H 1.09009 * 109.47309 * 60.00154 * 19 18 17 50 50 H 0.97008 * 119.99786 * 179.97438 * 23 22 20 51 51 H 1.08002 * 120.07252 * 359.97438 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.7719 -0.1204 -2.5230 6 6 2.7187 -1.8925 -1.0717 7 6 2.8522 -2.4941 0.1741 8 6 3.5399 -3.6858 0.2973 9 6 4.1071 -4.2779 -0.8148 10 6 3.9824 -3.6788 -2.0625 11 7 4.5558 -4.2784 -3.1867 12 6 5.7073 -4.9687 -3.0687 13 8 6.2959 -4.9904 -2.0074 14 6 6.2591 -5.7072 -4.2438 15 8 5.6708 -5.6853 -5.3051 16 7 7.4103 -6.3979 -4.1257 17 6 7.9513 -7.1227 -5.2781 18 6 9.2553 -7.8162 -4.8784 19 6 9.8205 -8.5726 -6.0822 20 6 11.1051 -9.2551 -5.6886 21 1 11.4806 -9.1593 -4.6805 22 6 11.8005 -10.0027 -6.6152 23 7 12.9219 -10.5979 -6.2717 24 14 11.1507 -10.1690 -8.3586 25 1 11.6998 -9.0742 -9.1981 26 1 11.5676 -11.4794 -8.9193 27 1 9.6681 -10.0859 -8.3442 28 6 3.2870 -2.4842 -2.1907 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 2.5944 0.5422 -2.7923 37 1 1.6979 -0.9239 -3.2558 38 1 0.8399 0.4448 -2.5083 39 1 2.4136 -2.0318 1.0461 40 1 3.6387 -4.1533 1.2658 41 1 4.6476 -5.2075 -0.7144 42 1 4.1252 -4.1977 -4.0522 43 1 7.8808 -6.4152 -3.2776 44 1 7.2292 -7.8690 -5.6096 45 1 8.1471 -6.4213 -6.0893 46 1 9.9771 -7.0696 -4.5473 47 1 9.0598 -8.5175 -4.0672 48 1 9.0988 -9.3192 -6.4137 49 1 10.0159 -7.8709 -6.8932 50 1 13.4110 -11.1242 -6.9235 51 1 3.1883 -2.0167 -3.1592 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171767451.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:24 Heat of formation + Delta-G solvation = -39.837439 kcal Electronic energy + Delta-G solvation = -28986.523513 eV Core-core repulsion = 24885.949252 eV Total energy + Delta-G solvation = -4100.574261 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.20077 -39.99487 -38.82129 -37.39514 -35.93165 -34.90689 -33.34487 -33.11092 -31.50852 -30.24885 -29.77847 -27.75046 -27.70656 -26.59380 -25.16384 -23.20149 -22.36793 -22.16568 -20.88796 -20.33703 -19.82627 -18.78465 -18.20752 -16.92556 -16.75478 -16.31247 -16.20987 -16.01585 -15.64993 -15.33789 -15.15309 -14.90942 -14.35714 -14.32379 -14.15047 -14.08013 -13.78542 -13.66900 -13.47394 -13.00737 -12.75573 -12.73663 -12.61317 -12.58636 -12.11557 -12.09033 -11.99111 -11.83948 -11.64284 -11.58603 -11.14244 -11.08321 -10.93378 -10.84709 -10.20312 -10.01908 -9.92725 -9.79643 -9.56519 -9.25112 -9.13258 -8.59882 -8.56979 -7.58646 -6.07362 -4.06459 0.83358 1.32582 1.53619 2.15223 2.68019 3.05756 3.29855 3.37633 3.40889 3.50586 3.64499 4.22100 4.32924 4.42844 4.49163 4.54272 4.63793 4.75204 4.92704 5.00353 5.03574 5.07918 5.11782 5.23426 5.25852 5.26363 5.30402 5.31572 5.31783 5.40321 5.47762 5.53967 5.63797 5.70311 5.86997 5.90320 5.98089 6.08851 6.10170 6.36233 6.36612 6.48872 6.58362 6.71998 6.84986 6.89665 7.13837 7.18538 7.27068 7.31979 7.57482 7.73680 7.88992 8.48863 8.96698 9.54430 11.05843 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.031591 B = 0.001465 C = 0.001432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.108462 B =19112.395610 C =19547.565286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 C -0.163 4.163 4 N -0.627 5.627 5 C 0.092 3.908 6 C 0.234 3.766 7 C -0.211 4.211 8 C -0.052 4.052 9 C -0.176 4.176 10 C 0.191 3.809 11 N -0.648 5.648 12 C 0.509 3.491 13 O -0.494 6.494 14 C 0.504 3.496 15 O -0.524 6.524 16 N -0.688 5.688 17 C 0.111 3.889 18 C -0.116 4.116 19 C -0.010 4.010 20 C -0.524 4.524 21 H 0.073 0.927 22 C 0.067 3.933 23 N -0.902 5.902 24 Si 0.880 3.120 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.265 1.265 28 C -0.220 4.220 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.132 0.868 42 H 0.422 0.578 43 H 0.413 0.587 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.019 0.981 49 H 0.015 0.985 50 H 0.263 0.737 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.995 23.930 13.252 39.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.037 3.963 3 C -0.221 4.221 4 N -0.339 5.339 5 C -0.051 4.051 6 C 0.132 3.868 7 C -0.234 4.234 8 C -0.072 4.072 9 C -0.198 4.198 10 C 0.096 3.904 11 N -0.295 5.295 12 C 0.291 3.709 13 O -0.367 6.367 14 C 0.283 3.717 15 O -0.401 6.401 16 N -0.340 5.340 17 C -0.011 4.011 18 C -0.154 4.154 19 C -0.048 4.048 20 C -0.561 4.561 21 H 0.091 0.909 22 C -0.134 4.134 23 N -0.541 5.541 24 Si 0.707 3.293 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.189 1.189 28 C -0.245 4.245 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.150 0.850 42 H 0.260 0.740 43 H 0.250 0.750 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.038 0.962 49 H 0.033 0.967 50 H 0.073 0.927 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -27.879 23.913 13.100 38.996 hybrid contribution -0.158 -0.065 -1.074 1.087 sum -28.037 23.848 12.026 38.723 Atomic orbital electron populations 1.22213 0.95456 1.02486 1.02208 1.21047 0.93810 0.93042 0.88401 1.22177 1.01872 0.95765 1.02329 1.46496 1.59787 1.21937 1.05666 1.21575 1.00680 0.98771 0.84052 1.17444 0.90534 0.85573 0.93211 1.20695 1.07999 0.98807 0.95895 1.20759 0.94295 0.93985 0.98124 1.20939 1.05121 1.02373 0.91350 1.17399 0.94523 0.91591 0.86843 1.43173 1.23557 1.51010 1.11716 1.20449 0.81142 0.79962 0.89323 1.90798 1.57910 1.59299 1.28667 1.19803 0.82680 0.81159 0.88037 1.90773 1.59063 1.61953 1.28304 1.46013 1.22722 1.48691 1.16613 1.21883 0.96792 0.95434 0.86994 1.21749 0.93192 0.99251 1.01160 1.19504 0.96857 0.95252 0.93213 1.21090 1.05373 1.30300 0.99387 0.90923 1.25024 0.94614 0.95009 0.98765 1.69916 1.15758 1.33247 1.35149 0.86776 0.79985 0.77536 0.84994 1.20253 1.21346 1.18921 1.20276 1.08563 0.96989 0.98663 0.92410 0.91604 0.92151 0.88982 0.91510 0.92125 0.92342 0.93455 0.91413 0.91541 0.85939 0.85624 0.85029 0.74027 0.75037 0.90975 0.91001 0.91768 0.91734 0.96222 0.96668 0.92674 0.85586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 9.27 37.16 0.34 -0.34 16 2 C 0.14 0.72 3.15 -67.93 -0.21 0.50 16 3 C -0.16 -0.71 9.10 37.16 0.34 -0.37 16 4 N -0.63 -4.19 2.90 -172.02 -0.50 -4.69 16 5 C 0.09 0.47 8.90 59.85 0.53 1.01 16 6 C 0.23 2.03 6.53 -83.82 -0.55 1.49 16 7 C -0.21 -1.78 9.26 -39.34 -0.36 -2.15 16 8 C -0.05 -0.48 10.03 -39.64 -0.40 -0.88 16 9 C -0.18 -1.97 8.65 -39.34 -0.34 -2.31 16 10 C 0.19 2.07 6.27 -83.78 -0.53 1.54 16 11 N -0.65 -6.98 5.32 -10.32 -0.05 -7.03 16 12 C 0.51 6.54 7.62 -11.63 -0.09 6.45 16 13 O -0.49 -7.15 14.15 5.47 0.08 -7.07 16 14 C 0.50 7.06 7.89 -11.63 -0.09 6.97 16 15 O -0.52 -8.30 16.48 5.49 0.09 -8.20 16 16 N -0.69 -9.61 5.55 -60.76 -0.34 -9.94 16 17 C 0.11 1.74 5.67 -4.04 -0.02 1.72 16 18 C -0.12 -2.11 5.27 -26.73 -0.14 -2.25 16 19 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 20 C -0.52 -14.63 9.66 -34.44 -0.33 -14.97 16 21 H 0.07 2.17 7.99 -52.49 -0.42 1.76 16 22 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 23 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 24 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 27 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 28 C -0.22 -2.04 9.07 -39.18 -0.36 -2.40 16 29 H 0.06 0.23 6.90 -51.93 -0.36 -0.13 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.47 5.40 -51.93 -0.28 0.19 16 33 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.24 7.52 -51.93 -0.39 -0.15 16 36 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.07 0.34 6.46 -51.93 -0.34 0.00 16 38 H 0.07 0.26 6.71 -51.93 -0.35 -0.09 16 39 H 0.12 0.80 5.83 -52.49 -0.31 0.49 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 41 H 0.13 1.61 6.41 -52.48 -0.34 1.27 16 42 H 0.42 3.82 8.29 -40.82 -0.34 3.48 16 43 H 0.41 5.27 7.94 -40.82 -0.32 4.95 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 46 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 48 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 49 H 0.02 0.34 7.57 -51.92 -0.39 -0.05 16 50 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 51 H 0.13 0.97 6.31 -52.49 -0.33 0.64 16 LS Contribution 412.63 15.07 6.22 6.22 Total: -1.00 -32.91 412.63 -8.75 -41.66 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.93 Total: 3.57 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -2.42 Total: -4.48 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.12 Total: -48.51 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.17 Total: -15.28 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.91 -8.75 -41.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171767451.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.818 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds