Wall clock time and date at job start Wed Apr 1 2020 04:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46895 * 2 1 4 4 N 1.46497 * 109.47023 * 240.00478 * 2 1 3 5 5 C 1.46500 * 120.00227 * 65.78611 * 4 2 1 6 6 C 1.39671 * 120.00033 * 245.79059 * 4 2 1 7 7 C 1.38996 * 120.03621 * 5.61289 * 6 4 2 8 8 C 1.38141 * 120.07707 * 179.72248 * 7 6 4 9 9 C 1.38171 * 120.14879 * 0.56146 * 8 7 6 10 10 C 1.38965 * 120.07232 * 359.71926 * 9 8 7 11 11 N 1.39725 * 120.03797 * 180.02562 * 10 9 8 12 12 C 1.34775 * 119.99914 * 326.66581 * 11 10 9 13 13 O 1.21377 * 120.00131 * 354.77321 * 12 11 10 14 14 C 1.49352 * 119.99859 * 174.76417 * 12 11 10 15 15 O 1.21358 * 120.00201 * 0.02562 * 14 12 11 16 16 N 1.34775 * 119.99860 * 180.02562 * 14 12 11 17 17 C 1.46497 * 120.00193 * 179.97438 * 16 14 12 18 18 C 1.53004 * 109.47618 * 179.97438 * 17 16 14 19 19 C 1.52995 * 109.47203 * 180.02562 * 18 17 16 20 20 C 1.50702 * 109.47063 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99976 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99906 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99594 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00211 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47263 * 90.00050 * 24 22 20 26 26 H 1.48503 * 109.46891 * 209.99586 * 24 22 20 27 27 H 1.48500 * 109.46965 * 329.99507 * 24 22 20 28 28 C 1.38752 * 120.03902 * 185.89603 * 6 4 2 29 29 H 1.09001 * 109.47398 * 59.99747 * 1 2 3 30 30 H 1.08996 * 109.47353 * 299.99662 * 1 2 3 31 31 H 1.09002 * 109.47262 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47223 * 120.00401 * 2 1 3 33 33 H 1.09000 * 109.46817 * 60.00545 * 3 2 1 34 34 H 1.09000 * 109.46843 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47304 * 300.00311 * 3 2 1 36 36 H 1.09001 * 109.47304 * 90.00285 * 5 4 2 37 37 H 1.09000 * 109.47293 * 209.99842 * 5 4 2 38 38 H 1.09001 * 109.47303 * 329.99787 * 5 4 2 39 39 H 1.08001 * 119.95902 * 0.02562 * 7 6 4 40 40 H 1.07997 * 119.92921 * 180.25476 * 8 7 6 41 41 H 1.08003 * 119.96339 * 179.74478 * 9 8 7 42 42 H 0.97002 * 120.00025 * 146.67639 * 11 10 9 43 43 H 0.97001 * 120.00451 * 359.97438 * 16 14 12 44 44 H 1.09004 * 109.47273 * 300.00423 * 17 16 14 45 45 H 1.09009 * 109.46969 * 60.00073 * 17 16 14 46 46 H 1.08999 * 109.46833 * 300.00223 * 18 17 16 47 47 H 1.08996 * 109.46679 * 60.00055 * 18 17 16 48 48 H 1.08999 * 109.47276 * 299.99790 * 19 18 17 49 49 H 1.09009 * 109.47309 * 60.00154 * 19 18 17 50 50 H 0.97008 * 119.99786 * 179.97438 * 23 22 20 51 51 H 1.08002 * 120.07252 * 359.97438 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.7719 -0.1204 -2.5230 6 6 2.7187 -1.8925 -1.0717 7 6 2.8522 -2.4941 0.1741 8 6 3.5399 -3.6858 0.2973 9 6 4.1071 -4.2779 -0.8148 10 6 3.9824 -3.6788 -2.0625 11 7 4.5558 -4.2784 -3.1867 12 6 5.7073 -4.9687 -3.0687 13 8 6.2959 -4.9904 -2.0074 14 6 6.2591 -5.7072 -4.2438 15 8 5.6708 -5.6853 -5.3051 16 7 7.4103 -6.3979 -4.1257 17 6 7.9513 -7.1227 -5.2781 18 6 9.2553 -7.8162 -4.8784 19 6 9.8205 -8.5726 -6.0822 20 6 11.1051 -9.2551 -5.6886 21 1 11.4806 -9.1593 -4.6805 22 6 11.8005 -10.0027 -6.6152 23 7 12.9219 -10.5979 -6.2717 24 14 11.1507 -10.1690 -8.3586 25 1 11.6998 -9.0742 -9.1981 26 1 11.5676 -11.4794 -8.9193 27 1 9.6681 -10.0859 -8.3442 28 6 3.2870 -2.4842 -2.1907 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 2.5944 0.5422 -2.7923 37 1 1.6979 -0.9239 -3.2558 38 1 0.8399 0.4448 -2.5083 39 1 2.4136 -2.0318 1.0461 40 1 3.6387 -4.1533 1.2658 41 1 4.6476 -5.2075 -0.7144 42 1 4.1252 -4.1977 -4.0522 43 1 7.8808 -6.4152 -3.2776 44 1 7.2292 -7.8690 -5.6096 45 1 8.1471 -6.4213 -6.0893 46 1 9.9771 -7.0696 -4.5473 47 1 9.0598 -8.5175 -4.0672 48 1 9.0988 -9.3192 -6.4137 49 1 10.0159 -7.8709 -6.8932 50 1 13.4110 -11.1242 -6.9235 51 1 3.1883 -2.0167 -3.1592 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171767451.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:23 Heat of formation + Delta-G solvation = -61.040735 kcal Electronic energy + Delta-G solvation = -28987.442957 eV Core-core repulsion = 24885.949252 eV Total energy + Delta-G solvation = -4101.493705 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.17071 -40.78424 -39.77176 -38.08970 -37.23224 -35.88414 -35.10723 -33.60759 -33.31442 -31.02089 -30.36197 -29.33772 -28.04651 -27.20481 -26.35116 -24.49833 -23.16435 -23.02408 -22.29703 -21.43194 -20.54942 -19.80759 -19.04349 -18.76660 -17.89698 -17.34715 -16.92014 -16.79529 -16.60636 -16.45677 -16.11095 -15.96072 -15.62874 -15.21610 -15.07735 -14.78807 -14.75262 -14.65564 -14.62058 -13.82866 -13.81476 -13.72203 -13.61767 -13.30555 -13.13809 -12.89796 -12.85942 -12.74394 -12.70280 -12.47059 -12.20090 -12.16226 -11.90677 -11.78404 -11.66583 -11.60443 -11.48080 -11.33286 -10.82144 -10.74973 -10.55541 -10.33188 -9.36028 -8.28002 -8.19129 -6.32527 -0.08398 0.56696 0.68710 1.15289 1.38886 1.40528 1.52225 2.00326 2.15589 2.37924 2.53019 2.91427 3.07957 3.27409 3.82078 3.94313 4.00693 4.13579 4.17279 4.19223 4.27626 4.32126 4.42789 4.47541 4.51399 4.57913 4.67460 4.71885 4.75589 4.79463 4.81554 4.86269 4.90699 4.97094 5.01732 5.04942 5.12798 5.18192 5.24779 5.29839 5.36584 5.37545 5.46591 5.55701 5.64457 5.65387 5.76915 5.97204 6.23894 6.28423 6.38755 6.53788 6.62779 6.75876 6.80003 7.32351 8.88597 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.031591 B = 0.001465 C = 0.001432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.108462 B =19112.395610 C =19547.565286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 C -0.158 4.158 4 N -0.627 5.627 5 C 0.087 3.913 6 C 0.231 3.769 7 C -0.212 4.212 8 C -0.055 4.055 9 C -0.199 4.199 10 C 0.173 3.827 11 N -0.635 5.635 12 C 0.514 3.486 13 O -0.514 6.514 14 C 0.509 3.491 15 O -0.541 6.541 16 N -0.685 5.685 17 C 0.124 3.876 18 C -0.105 4.105 19 C -0.011 4.011 20 C -0.534 4.534 21 H 0.034 0.966 22 C 0.004 3.996 23 N -0.952 5.952 24 Si 0.950 3.050 25 H -0.267 1.267 26 H -0.286 1.286 27 H -0.243 1.243 28 C -0.223 4.223 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.115 0.885 42 H 0.429 0.571 43 H 0.419 0.581 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.026 0.974 49 H 0.024 0.976 50 H 0.266 0.734 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.653 25.890 12.738 42.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 C -0.217 4.217 4 N -0.337 5.337 5 C -0.055 4.055 6 C 0.127 3.873 7 C -0.234 4.234 8 C -0.074 4.074 9 C -0.221 4.221 10 C 0.079 3.921 11 N -0.282 5.282 12 C 0.296 3.704 13 O -0.389 6.389 14 C 0.289 3.711 15 O -0.419 6.419 16 N -0.337 5.337 17 C 0.001 3.999 18 C -0.143 4.143 19 C -0.049 4.049 20 C -0.572 4.572 21 H 0.053 0.947 22 C -0.193 4.193 23 N -0.593 5.593 24 Si 0.773 3.227 25 H -0.192 1.192 26 H -0.212 1.212 27 H -0.167 1.167 28 C -0.248 4.248 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.133 0.867 42 H 0.269 0.731 43 H 0.257 0.743 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.044 0.956 49 H 0.043 0.957 50 H 0.075 0.925 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -30.586 25.920 12.601 42.025 hybrid contribution 0.633 -0.581 -0.779 1.160 sum -29.952 25.339 11.821 40.975 Atomic orbital electron populations 1.22159 0.94478 1.02090 1.03049 1.21209 0.94520 0.93292 0.87777 1.22135 1.00965 0.95348 1.03213 1.46717 1.58957 1.21232 1.06829 1.21701 1.01505 0.98959 0.83380 1.17624 0.90294 0.86227 0.93140 1.20947 1.07429 0.98417 0.96629 1.20975 0.93847 0.94255 0.98323 1.20949 1.06365 1.02440 0.92368 1.17551 0.95469 0.92442 0.86608 1.43073 1.22735 1.50082 1.12282 1.20171 0.81599 0.80136 0.88523 1.90796 1.58683 1.60294 1.29110 1.19919 0.82285 0.80782 0.88088 1.90763 1.59517 1.62589 1.29010 1.45877 1.22872 1.48516 1.16461 1.21593 0.95382 0.95508 0.87419 1.21529 0.94452 0.99025 0.99312 1.19460 0.94586 0.95596 0.95230 1.21487 1.07359 1.30480 0.97855 0.94748 1.26018 0.94779 0.94689 1.03811 1.70076 1.17570 1.34663 1.36963 0.85660 0.80462 0.77658 0.78897 1.19218 1.21213 1.16670 1.20403 1.08265 0.96518 0.99621 0.92112 0.90255 0.93118 0.88982 0.90140 0.93432 0.91986 0.93340 0.91284 0.89994 0.83996 0.83940 0.86713 0.73118 0.74335 0.90717 0.90651 0.91794 0.91782 0.95606 0.95734 0.92549 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 9.27 71.98 0.67 -0.28 16 2 C 0.13 1.09 3.15 44.99 0.14 1.23 16 3 C -0.16 -1.04 9.10 71.98 0.66 -0.39 16 4 N -0.63 -7.21 2.90 -698.16 -2.02 -9.24 16 5 C 0.09 0.72 8.90 127.77 1.14 1.86 16 6 C 0.23 3.68 6.53 38.20 0.25 3.93 16 7 C -0.21 -3.27 9.26 22.43 0.21 -3.06 16 8 C -0.05 -0.97 10.03 22.23 0.22 -0.75 16 9 C -0.20 -4.47 8.65 22.43 0.19 -4.28 16 10 C 0.17 3.69 6.27 38.20 0.24 3.93 16 11 N -0.63 -13.40 5.32 -304.90 -1.62 -15.02 16 12 C 0.51 13.04 7.62 87.24 0.66 13.71 16 13 O -0.51 -14.97 14.15 -3.33 -0.05 -15.02 16 14 C 0.51 13.82 7.89 87.24 0.69 14.51 16 15 O -0.54 -16.45 16.48 -3.27 -0.05 -16.50 16 16 N -0.69 -18.42 5.55 -464.50 -2.58 -20.99 16 17 C 0.12 3.68 5.67 86.38 0.49 4.17 16 18 C -0.11 -3.75 5.27 30.59 0.16 -3.59 16 19 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 20 C -0.53 -30.26 9.66 25.60 0.25 -30.01 16 21 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 22 C 0.00 0.22 5.47 84.65 0.46 0.68 16 23 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 24 Si 0.95 43.78 27.47 68.60 1.88 45.66 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 27 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 28 C -0.22 -3.91 9.07 22.53 0.20 -3.71 16 29 H 0.06 0.33 6.90 -2.39 -0.02 0.32 16 30 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.05 0.41 8.14 -2.39 -0.02 0.40 16 32 H 0.09 0.73 5.40 -2.39 -0.01 0.72 16 33 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.06 0.37 7.52 -2.39 -0.02 0.35 16 36 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.07 0.56 6.46 -2.39 -0.02 0.55 16 38 H 0.08 0.43 6.71 -2.39 -0.02 0.42 16 39 H 0.14 1.56 5.83 -2.91 -0.02 1.55 16 40 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 41 H 0.11 2.92 6.41 -2.91 -0.02 2.90 16 42 H 0.43 7.46 8.29 -92.71 -0.77 6.69 16 43 H 0.42 10.42 7.94 -92.71 -0.74 9.68 16 44 H 0.07 2.22 8.14 -2.38 -0.02 2.21 16 45 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 46 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.06 2.27 8.14 -2.39 -0.02 2.26 16 48 H 0.03 1.12 7.20 -2.39 -0.02 1.10 16 49 H 0.02 1.05 7.57 -2.38 -0.02 1.03 16 50 H 0.27 15.55 8.31 -92.70 -0.77 14.77 16 51 H 0.14 1.96 6.31 -2.91 -0.02 1.94 16 Total: -1.00 -71.31 412.63 2.01 -69.30 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: -0.60 Total: 23.57 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 6.75 Total: -2.39 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -5.92 Total: -104.61 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.10 Total: -31.52 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.66 kcal Total: -71.31 2.01 -69.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171767451.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.256 kcal (2) G-P(sol) polarization free energy of solvation -71.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds