Wall clock time and date at job start Wed Apr 1 2020 05:34:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53002 * 109.47190 * 2 1
4 4 N 1.46502 * 109.47390 * 180.02562 * 3 2 1
5 5 C 1.36793 * 119.99662 * 264.45142 * 4 3 2
6 6 H 1.08000 * 119.99860 * 132.10344 * 5 4 3
7 7 C 1.39100 * 120.00212 * 312.10669 * 5 4 3
8 8 N 1.31328 * 119.99844 * 3.23544 * 7 5 4
9 9 Si 1.86801 * 119.99972 * 183.23692 * 7 5 4
10 10 H 1.48498 * 109.47274 * 89.99630 * 9 7 5
11 11 H 1.48500 * 109.47164 * 209.99702 * 9 7 5
12 12 H 1.48502 * 109.46853 * 329.99702 * 9 7 5
13 13 C 1.34777 * 120.00107 * 84.45314 * 4 3 2
14 14 O 1.21560 * 119.99799 * 4.84384 * 13 4 3
15 15 C 1.48023 * 119.99891 * 184.84209 * 13 4 3
16 16 C 1.39137 * 119.69553 * 174.04409 * 15 13 4
17 17 C 1.39408 * 118.94471 * 180.22918 * 16 15 13
18 18 N 1.39195 * 120.82294 * 179.75396 * 17 16 15
19 19 C 1.47015 * 111.00491 * 56.08610 * 18 17 16
20 20 C 1.53090 * 109.26104 * 182.39165 * 19 18 17
21 21 H 1.09003 * 109.50907 * 63.08661 * 20 19 18
22 22 C 1.53002 * 109.50649 * 183.21698 * 20 19 18
23 23 O 1.43012 * 109.26035 * 303.15088 * 20 19 18
24 24 C 1.43016 * 113.73798 * 58.67038 * 23 20 19
25 25 H 1.08998 * 109.50554 * 61.26642 * 24 23 20
26 26 C 1.53005 * 109.50709 * 181.35081 * 24 23 20
27 27 C 1.47019 * 111.00214 * 179.72211 * 18 17 16
28 28 C 1.39450 * 118.35005 * 359.48312 * 17 16 15
29 29 C 1.38229 * 119.28013 * 0.27246 * 28 17 16
30 30 N 1.31657 * 121.00019 * 359.97438 * 29 28 17
31 31 H 1.09002 * 109.46987 * 179.97438 * 1 2 3
32 32 H 1.08994 * 109.47462 * 300.00187 * 1 2 3
33 33 H 1.09003 * 109.46571 * 60.00289 * 1 2 3
34 34 H 1.09003 * 109.47437 * 240.00042 * 2 1 3
35 35 H 1.08997 * 109.47381 * 119.99480 * 2 1 3
36 36 H 1.08998 * 109.47521 * 59.99390 * 3 2 1
37 37 H 1.09002 * 109.46959 * 300.00134 * 3 2 1
38 38 H 0.97005 * 119.99704 * 180.02562 * 8 7 5
39 39 H 1.07994 * 120.52540 * 359.97438 * 16 15 13
40 40 H 1.08998 * 109.50379 * 62.45250 * 19 18 17
41 41 H 1.08998 * 109.50200 * 302.33101 * 19 18 17
42 42 H 1.09000 * 109.47162 * 179.78771 * 22 20 19
43 43 H 1.09005 * 109.47185 * 299.78383 * 22 20 19
44 44 H 1.08993 * 109.47167 * 59.78154 * 22 20 19
45 45 H 1.09004 * 109.46823 * 60.00179 * 26 24 23
46 46 H 1.08995 * 109.47121 * 179.97438 * 26 24 23
47 47 H 1.08993 * 109.47042 * 300.00097 * 26 24 23
48 48 H 1.08999 * 109.50643 * 57.67060 * 27 18 17
49 49 H 1.08996 * 109.50187 * 297.54408 * 27 18 17
50 50 H 1.07996 * 120.36376 * 180.25571 * 28 17 16
51 51 H 1.07992 * 119.50247 * 180.02562 * 29 28 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5050 1.4426 -0.0006
5 6 4.1894 1.5570 1.1783
6 1 5.0026 0.8812 1.3983
7 6 3.8380 2.5436 2.0936
8 7 2.8092 3.3242 1.8550
9 14 4.8294 2.7583 3.6622
10 1 5.9329 3.7227 3.4223
11 1 3.9466 3.2741 4.7391
12 1 5.3970 1.4486 4.0721
13 6 4.1785 1.3299 -1.1626
14 8 3.5735 1.3170 -2.2169
15 6 5.6547 1.2221 -1.1550
16 6 6.3344 0.9815 -2.3451
17 6 7.7244 0.8780 -2.3191
18 7 8.4433 0.6330 -3.4856
19 6 8.1491 1.6469 -4.5087
20 6 8.9126 1.3065 -5.7912
21 1 8.5627 0.3501 -6.1801
22 6 8.6741 2.4009 -6.8335
23 8 10.3101 1.2210 -5.4998
24 6 10.6325 0.2426 -4.5078
25 1 10.3327 -0.7446 -4.8593
26 6 12.1403 0.2561 -4.2479
27 6 9.8865 0.5722 -3.2122
28 6 8.3772 1.0318 -1.0964
29 6 7.6317 1.2742 0.0421
30 7 6.3192 1.3619 -0.0126
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5138 0.8899
33 1 -0.3632 0.5138 -0.8901
34 1 1.8934 -0.5138 -0.8900
35 1 1.8934 -0.5137 0.8900
36 1 1.6767 1.9564 0.8899
37 1 1.6767 1.9563 -0.8900
38 1 2.5644 4.0125 2.4932
39 1 5.7934 0.8726 -3.2734
40 1 8.4605 2.6276 -4.1492
41 1 7.0787 1.6569 -4.7140
42 1 9.2209 2.1598 -7.7451
43 1 7.6088 2.4656 -7.0553
44 1 9.0225 3.3568 -6.4428
45 1 12.4392 1.2432 -3.8949
46 1 12.3853 -0.4894 -3.4915
47 1 12.6702 0.0247 -5.1717
48 1 10.0843 -0.2022 -2.4711
49 1 10.2257 1.5358 -2.8320
50 1 9.4534 0.9620 -1.0396
51 1 8.1336 1.3943 0.9908
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000188711185.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:34:14
Heat of formation + Delta-G solvation = -22.006478 kcal
Electronic energy + Delta-G solvation = -31526.360363 eV
Core-core repulsion = 27426.559311 eV
Total energy + Delta-G solvation = -4099.801052 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-40.79305 -39.42608 -38.05841 -36.08695 -35.09438 -34.06745 -32.79833 -31.44221
-31.08128 -30.68115 -29.77160 -27.25584 -25.91171 -25.49315 -24.70942 -23.08162
-22.17944 -21.79681 -20.89842 -20.47716 -19.21126 -17.97273 -16.94038 -16.69247
-16.33661 -15.71152 -15.50039 -15.27752 -14.90958 -14.77373 -14.40458 -14.23902
-14.04610 -13.91129 -13.59698 -13.54437 -13.24607 -13.02109 -12.85737 -12.80588
-12.41551 -12.27767 -12.16229 -12.09013 -11.91154 -11.45194 -11.37256 -11.30295
-11.19551 -11.16693 -10.93609 -10.78786 -10.67422 -10.35632 -10.31020 -10.21555
-9.68423 -9.64659 -9.11334 -8.90744 -8.63828 -8.24395 -8.12818 -7.28123
-6.21744 -3.96388 1.31549 1.69183 3.21029 3.27789 3.31066 3.34172
3.44995 3.76800 4.19177 4.41527 4.55101 4.59350 4.67547 4.74386
4.81352 4.88865 4.99014 5.10166 5.11266 5.16543 5.23957 5.26274
5.28472 5.36510 5.41779 5.54402 5.59876 5.62885 5.68713 5.77503
5.81638 5.82965 5.85377 5.91583 5.98666 6.08603 6.14484 6.25136
6.33498 6.53440 6.57408 6.72157 6.79205 6.86638 6.90435 6.98234
7.17231 7.26001 7.49464 7.75663 8.08014 8.53050 8.66925 9.17990
9.49804 9.93927 10.77807
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013515 B = 0.003012 C = 0.002637
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2071.242618 B = 9295.215932 C =10614.559604
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.134 4.134
3 C 0.107 3.893
4 N -0.408 5.408
5 C -0.294 4.294
6 H 0.114 0.886
7 C 0.039 3.961
8 N -0.877 5.877
9 Si 0.924 3.076
10 H -0.278 1.278
11 H -0.288 1.288
12 H -0.269 1.269
13 C 0.505 3.495
14 O -0.603 6.603
15 C 0.138 3.862
16 C -0.149 4.149
17 C 0.131 3.869
18 N -0.485 5.485
19 C 0.025 3.975
20 C 0.091 3.909
21 H 0.069 0.931
22 C -0.144 4.144
23 O -0.380 6.380
24 C 0.089 3.911
25 H 0.068 0.932
26 C -0.143 4.143
27 C 0.020 3.980
28 C -0.226 4.226
29 C 0.105 3.895
30 N -0.424 5.424
31 H 0.044 0.956
32 H 0.052 0.948
33 H 0.049 0.951
34 H 0.050 0.950
35 H 0.058 0.942
36 H 0.119 0.881
37 H 0.051 0.949
38 H 0.267 0.733
39 H 0.140 0.860
40 H 0.054 0.946
41 H 0.097 0.903
42 H 0.067 0.933
43 H 0.076 0.924
44 H 0.064 0.936
45 H 0.064 0.936
46 H 0.073 0.927
47 H 0.067 0.933
48 H 0.093 0.907
49 H 0.056 0.944
50 H 0.128 0.872
51 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.543 -4.555 -8.975 16.874
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.173 4.173
3 C -0.015 4.015
4 N -0.123 5.123
5 C -0.423 4.423
6 H 0.131 0.869
7 C -0.165 4.165
8 N -0.516 5.516
9 Si 0.752 3.248
10 H -0.204 1.204
11 H -0.214 1.214
12 H -0.193 1.193
13 C 0.293 3.707
14 O -0.490 6.490
15 C -0.001 4.001
16 C -0.173 4.173
17 C 0.027 3.973
18 N -0.201 5.201
19 C -0.101 4.101
20 C 0.033 3.967
21 H 0.087 0.913
22 C -0.202 4.202
23 O -0.299 6.299
24 C 0.031 3.969
25 H 0.086 0.914
26 C -0.201 4.201
27 C -0.107 4.107
28 C -0.250 4.250
29 C -0.055 4.055
30 N -0.136 5.136
31 H 0.063 0.937
32 H 0.072 0.928
33 H 0.068 0.932
34 H 0.068 0.932
35 H 0.077 0.923
36 H 0.136 0.864
37 H 0.070 0.930
38 H 0.078 0.922
39 H 0.157 0.843
40 H 0.072 0.928
41 H 0.116 0.884
42 H 0.086 0.914
43 H 0.095 0.905
44 H 0.083 0.917
45 H 0.083 0.917
46 H 0.092 0.908
47 H 0.086 0.914
48 H 0.111 0.889
49 H 0.074 0.926
50 H 0.146 0.854
51 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges 12.612 -4.576 -8.939 16.122
hybrid contribution 1.080 0.549 0.614 1.358
sum 13.692 -4.027 -8.324 16.522
Atomic orbital electron populations
1.21639 0.96454 1.00369 1.01476 1.21846 0.94875 0.99414 1.01153
1.21713 0.81147 0.94422 1.04267 1.43442 1.05014 1.58686 1.05134
1.20023 1.14381 1.14475 0.93424 0.86928 1.25569 0.96117 0.94944
0.99878 1.69687 1.25369 1.19738 1.36785 0.85972 0.79501 0.78785
0.80591 1.20384 1.21386 1.19348 1.18105 0.85008 0.83068 0.84505
1.90611 1.68654 1.58373 1.31324 1.21366 0.95625 0.94932 0.88134
1.21682 0.91902 1.03310 1.00367 1.18959 0.92750 0.95896 0.89735
1.59094 1.06895 1.45836 1.08229 1.23022 1.02460 0.92982 0.91632
1.22175 0.81105 0.99707 0.93739 0.91277 1.21751 1.02435 0.98015
0.98007 1.87985 1.23877 1.59371 1.58713 1.22160 0.95307 0.92290
0.87097 0.91427 1.21740 0.92920 1.02947 1.02501 1.23011 0.86483
1.02394 0.98834 1.22261 1.00776 1.08021 0.93897 1.22923 0.90667
0.94402 0.97495 1.68925 1.07384 1.10536 1.26786 0.93701 0.92843
0.93161 0.93158 0.92344 0.86357 0.93004 0.92204 0.84263 0.92786
0.88430 0.91424 0.90527 0.91729 0.91738 0.90779 0.91426 0.88862
0.92576 0.85373 0.83184
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.42 9.91 37.16 0.37 -2.06 16
2 C -0.13 -2.81 6.22 -26.73 -0.17 -2.97 16
3 C 0.11 2.62 4.88 -4.04 -0.02 2.60 16
4 N -0.41 -10.62 2.51 -115.83 -0.29 -10.92 16
5 C -0.29 -7.60 7.47 -15.02 -0.11 -7.72 16
6 H 0.11 2.88 5.97 -52.49 -0.31 2.57 16
7 C 0.04 0.99 5.35 -17.45 -0.09 0.90 16
8 N -0.88 -23.50 10.98 55.50 0.61 -22.89 16
9 Si 0.92 20.22 29.55 -169.99 -5.02 15.20 16
10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16
11 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16
12 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16
13 C 0.50 12.99 7.57 -12.25 -0.09 12.90 16
14 O -0.60 -16.31 15.98 5.31 0.08 -16.22 16
15 C 0.14 3.10 6.66 -83.06 -0.55 2.55 16
16 C -0.15 -2.87 8.81 -38.81 -0.34 -3.21 16
17 C 0.13 2.11 5.65 -83.63 -0.47 1.64 16
18 N -0.49 -6.55 4.77 -170.64 -0.81 -7.36 16
19 C 0.02 0.31 4.69 -3.71 -0.02 0.29 16
20 C 0.09 0.97 3.43 -26.68 -0.09 0.88 16
21 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
22 C -0.14 -1.26 9.57 37.16 0.36 -0.91 16
23 O -0.38 -4.33 10.11 -35.23 -0.36 -4.69 16
24 C 0.09 0.88 3.42 -26.68 -0.09 0.79 16
25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
26 C -0.14 -1.06 9.57 37.16 0.36 -0.70 16
27 C 0.02 0.22 3.63 -3.71 -0.01 0.20 16
28 C -0.23 -3.38 8.89 -39.13 -0.35 -3.73 16
29 C 0.10 1.79 11.17 -17.63 -0.20 1.59 16
30 N -0.42 -9.13 6.37 -9.90 -0.06 -9.20 16
31 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16
32 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16
33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16
34 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16
35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16
36 H 0.12 3.05 5.51 -51.93 -0.29 2.76 16
37 H 0.05 1.32 7.53 -51.93 -0.39 0.92 16
38 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16
39 H 0.14 2.68 6.86 -52.49 -0.36 2.32 16
40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
41 H 0.10 1.26 6.92 -51.93 -0.36 0.90 16
42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16
43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16
44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
48 H 0.09 0.92 7.26 -51.93 -0.38 0.54 16
49 H 0.06 0.62 7.57 -51.93 -0.39 0.23 16
50 H 0.13 1.50 5.96 -52.49 -0.31 1.19 16
51 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16
LS Contribution 402.40 15.07 6.06 6.06
Total: -1.00 -30.65 402.40 -9.59 -40.24
By element:
Atomic # 1 Polarization: 14.99 SS G_CDS: -8.27 Total: 6.72 kcal
Atomic # 6 Polarization: 4.58 SS G_CDS: -1.53 Total: 3.05 kcal
Atomic # 7 Polarization: -49.81 SS G_CDS: -0.56 Total: -50.36 kcal
Atomic # 8 Polarization: -20.64 SS G_CDS: -0.27 Total: -20.91 kcal
Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -30.65 -9.59 -40.24 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000188711185.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.235 kcal
(2) G-P(sol) polarization free energy of solvation -30.652 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.417 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.006 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds