Wall clock time and date at job start Wed Apr 1 2020 05:34:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53002 * 109.47190 * 2 1
4 4 N 1.46502 * 109.47390 * 180.02562 * 3 2 1
5 5 C 1.36793 * 119.99662 * 264.45142 * 4 3 2
6 6 H 1.08000 * 119.99860 * 132.10344 * 5 4 3
7 7 C 1.39100 * 120.00212 * 312.10669 * 5 4 3
8 8 N 1.31328 * 119.99844 * 3.23544 * 7 5 4
9 9 Si 1.86801 * 119.99972 * 183.23692 * 7 5 4
10 10 H 1.48498 * 109.47274 * 89.99630 * 9 7 5
11 11 H 1.48500 * 109.47164 * 209.99702 * 9 7 5
12 12 H 1.48502 * 109.46853 * 329.99702 * 9 7 5
13 13 C 1.34777 * 120.00107 * 84.45314 * 4 3 2
14 14 O 1.21560 * 119.99799 * 4.84384 * 13 4 3
15 15 C 1.48023 * 119.99891 * 184.84209 * 13 4 3
16 16 C 1.39137 * 119.69553 * 174.04409 * 15 13 4
17 17 C 1.39408 * 118.94471 * 180.22918 * 16 15 13
18 18 N 1.39195 * 120.82294 * 179.75396 * 17 16 15
19 19 C 1.47015 * 111.00491 * 56.08610 * 18 17 16
20 20 C 1.53090 * 109.26104 * 182.39165 * 19 18 17
21 21 H 1.09003 * 109.50907 * 63.08661 * 20 19 18
22 22 C 1.53002 * 109.50649 * 183.21698 * 20 19 18
23 23 O 1.43012 * 109.26035 * 303.15088 * 20 19 18
24 24 C 1.43016 * 113.73798 * 58.67038 * 23 20 19
25 25 H 1.08998 * 109.50554 * 61.26642 * 24 23 20
26 26 C 1.53005 * 109.50709 * 181.35081 * 24 23 20
27 27 C 1.47019 * 111.00214 * 179.72211 * 18 17 16
28 28 C 1.39450 * 118.35005 * 359.48312 * 17 16 15
29 29 C 1.38229 * 119.28013 * 0.27246 * 28 17 16
30 30 N 1.31657 * 121.00019 * 359.97438 * 29 28 17
31 31 H 1.09002 * 109.46987 * 179.97438 * 1 2 3
32 32 H 1.08994 * 109.47462 * 300.00187 * 1 2 3
33 33 H 1.09003 * 109.46571 * 60.00289 * 1 2 3
34 34 H 1.09003 * 109.47437 * 240.00042 * 2 1 3
35 35 H 1.08997 * 109.47381 * 119.99480 * 2 1 3
36 36 H 1.08998 * 109.47521 * 59.99390 * 3 2 1
37 37 H 1.09002 * 109.46959 * 300.00134 * 3 2 1
38 38 H 0.97005 * 119.99704 * 180.02562 * 8 7 5
39 39 H 1.07994 * 120.52540 * 359.97438 * 16 15 13
40 40 H 1.08998 * 109.50379 * 62.45250 * 19 18 17
41 41 H 1.08998 * 109.50200 * 302.33101 * 19 18 17
42 42 H 1.09000 * 109.47162 * 179.78771 * 22 20 19
43 43 H 1.09005 * 109.47185 * 299.78383 * 22 20 19
44 44 H 1.08993 * 109.47167 * 59.78154 * 22 20 19
45 45 H 1.09004 * 109.46823 * 60.00179 * 26 24 23
46 46 H 1.08995 * 109.47121 * 179.97438 * 26 24 23
47 47 H 1.08993 * 109.47042 * 300.00097 * 26 24 23
48 48 H 1.08999 * 109.50643 * 57.67060 * 27 18 17
49 49 H 1.08996 * 109.50187 * 297.54408 * 27 18 17
50 50 H 1.07996 * 120.36376 * 180.25571 * 28 17 16
51 51 H 1.07992 * 119.50247 * 180.02562 * 29 28 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5050 1.4426 -0.0006
5 6 4.1894 1.5570 1.1783
6 1 5.0026 0.8812 1.3983
7 6 3.8380 2.5436 2.0936
8 7 2.8092 3.3242 1.8550
9 14 4.8294 2.7583 3.6622
10 1 5.9329 3.7227 3.4223
11 1 3.9466 3.2741 4.7391
12 1 5.3970 1.4486 4.0721
13 6 4.1785 1.3299 -1.1626
14 8 3.5735 1.3170 -2.2169
15 6 5.6547 1.2221 -1.1550
16 6 6.3344 0.9815 -2.3451
17 6 7.7244 0.8780 -2.3191
18 7 8.4433 0.6330 -3.4856
19 6 8.1491 1.6469 -4.5087
20 6 8.9126 1.3065 -5.7912
21 1 8.5627 0.3501 -6.1801
22 6 8.6741 2.4009 -6.8335
23 8 10.3101 1.2210 -5.4998
24 6 10.6325 0.2426 -4.5078
25 1 10.3327 -0.7446 -4.8593
26 6 12.1403 0.2561 -4.2479
27 6 9.8865 0.5722 -3.2122
28 6 8.3772 1.0318 -1.0964
29 6 7.6317 1.2742 0.0421
30 7 6.3192 1.3619 -0.0126
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5138 0.8899
33 1 -0.3632 0.5138 -0.8901
34 1 1.8934 -0.5138 -0.8900
35 1 1.8934 -0.5137 0.8900
36 1 1.6767 1.9564 0.8899
37 1 1.6767 1.9563 -0.8900
38 1 2.5644 4.0125 2.4932
39 1 5.7934 0.8726 -3.2734
40 1 8.4605 2.6276 -4.1492
41 1 7.0787 1.6569 -4.7140
42 1 9.2209 2.1598 -7.7451
43 1 7.6088 2.4656 -7.0553
44 1 9.0225 3.3568 -6.4428
45 1 12.4392 1.2432 -3.8949
46 1 12.3853 -0.4894 -3.4915
47 1 12.6702 0.0247 -5.1717
48 1 10.0843 -0.2022 -2.4711
49 1 10.2257 1.5358 -2.8320
50 1 9.4534 0.9620 -1.0396
51 1 8.1336 1.3943 0.9908
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000188711185.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:34:12
Heat of formation + Delta-G solvation = -40.219280 kcal
Electronic energy + Delta-G solvation = -31527.150129 eV
Core-core repulsion = 27426.559311 eV
Total energy + Delta-G solvation = -4100.590819 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-41.99974 -40.82913 -39.67758 -37.24486 -37.04277 -34.85017 -34.53855 -33.20439
-32.36363 -32.10841 -30.74053 -28.26739 -27.60047 -26.78968 -26.29074 -24.46222
-23.44935 -22.79114 -22.35857 -21.61322 -21.02370 -19.58013 -18.11966 -17.97175
-17.66418 -17.07631 -16.67846 -16.49256 -16.41220 -16.19679 -15.98361 -15.75765
-15.59592 -15.33316 -14.99368 -14.78336 -14.64046 -14.44391 -13.97711 -13.87068
-13.53330 -13.26331 -13.18157 -13.11921 -13.06663 -12.92666 -12.87500 -12.78737
-12.63440 -12.46172 -12.33676 -12.00730 -11.99428 -11.95557 -11.60987 -11.53085
-11.50271 -10.97416 -10.82218 -10.57216 -10.13167 -9.95799 -9.34002 -9.22463
-8.15001 -5.97079 -0.17642 0.31893 1.49152 1.49436 1.61963 1.99156
2.30111 2.43558 2.62455 2.85098 3.05456 3.18693 3.54987 3.63514
3.69684 3.80308 3.95401 3.98198 4.05550 4.07117 4.18038 4.22019
4.28891 4.33335 4.37050 4.38662 4.51708 4.55758 4.57948 4.61753
4.70097 4.74572 4.78970 4.88474 4.93198 4.93820 4.97324 4.97485
5.07958 5.09005 5.20429 5.24425 5.30102 5.36145 5.49665 5.56063
5.68432 5.78751 5.99471 6.13196 6.17142 6.62235 7.06112 7.26299
7.55645 7.98254 8.85251
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013515 B = 0.003012 C = 0.002637
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2071.242618 B = 9295.215932 C =10614.559604
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.124 4.124
3 C 0.109 3.891
4 N -0.424 5.424
5 C -0.302 4.302
6 H 0.115 0.885
7 C -0.006 4.006
8 N -0.912 5.912
9 Si 0.989 3.011
10 H -0.277 1.277
11 H -0.287 1.287
12 H -0.255 1.255
13 C 0.491 3.509
14 O -0.632 6.632
15 C 0.106 3.894
16 C -0.154 4.154
17 C 0.141 3.859
18 N -0.490 5.490
19 C 0.026 3.974
20 C 0.094 3.906
21 H 0.070 0.930
22 C -0.142 4.142
23 O -0.390 6.390
24 C 0.086 3.914
25 H 0.068 0.932
26 C -0.138 4.138
27 C 0.017 3.983
28 C -0.201 4.201
29 C 0.099 3.901
30 N -0.458 5.458
31 H 0.073 0.927
32 H 0.058 0.942
33 H 0.051 0.949
34 H 0.036 0.964
35 H 0.055 0.945
36 H 0.105 0.895
37 H 0.028 0.972
38 H 0.267 0.733
39 H 0.128 0.872
40 H 0.048 0.952
41 H 0.086 0.914
42 H 0.078 0.922
43 H 0.083 0.917
44 H 0.061 0.939
45 H 0.063 0.937
46 H 0.094 0.906
47 H 0.070 0.930
48 H 0.111 0.889
49 H 0.061 0.939
50 H 0.173 0.827
51 H 0.184 0.816
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.825 -5.519 -8.476 19.631
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.162 4.162
3 C -0.014 4.014
4 N -0.138 5.138
5 C -0.431 4.431
6 H 0.132 0.868
7 C -0.206 4.206
8 N -0.552 5.552
9 Si 0.813 3.187
10 H -0.202 1.202
11 H -0.213 1.213
12 H -0.179 1.179
13 C 0.280 3.720
14 O -0.521 6.521
15 C -0.031 4.031
16 C -0.179 4.179
17 C 0.035 3.965
18 N -0.205 5.205
19 C -0.100 4.100
20 C 0.036 3.964
21 H 0.088 0.912
22 C -0.199 4.199
23 O -0.310 6.310
24 C 0.029 3.971
25 H 0.086 0.914
26 C -0.196 4.196
27 C -0.110 4.110
28 C -0.224 4.224
29 C -0.060 4.060
30 N -0.170 5.170
31 H 0.092 0.908
32 H 0.077 0.923
33 H 0.070 0.930
34 H 0.055 0.945
35 H 0.074 0.926
36 H 0.123 0.877
37 H 0.047 0.953
38 H 0.077 0.923
39 H 0.146 0.854
40 H 0.066 0.934
41 H 0.104 0.896
42 H 0.097 0.903
43 H 0.102 0.898
44 H 0.080 0.920
45 H 0.082 0.918
46 H 0.112 0.888
47 H 0.089 0.911
48 H 0.129 0.871
49 H 0.079 0.921
50 H 0.190 0.810
51 H 0.201 0.799
Dipole moment (debyes) X Y Z Total
from point charges 15.908 -5.558 -8.450 18.850
hybrid contribution 0.214 0.807 0.312 0.891
sum 16.122 -4.751 -8.138 18.674
Atomic orbital electron populations
1.21591 0.93303 1.02378 1.01845 1.21732 0.97576 0.96672 1.00237
1.21666 0.81152 0.96324 1.02264 1.43686 1.05504 1.59069 1.05548
1.20195 1.14511 1.14959 0.93397 0.86755 1.26380 0.96894 0.94453
1.02881 1.69823 1.26856 1.20514 1.37996 0.84992 0.77912 0.79113
0.76711 1.20238 1.21299 1.17884 1.18749 0.86934 0.82270 0.84027
1.90551 1.69927 1.59502 1.32127 1.20922 0.93980 0.98369 0.89821
1.21581 0.93558 1.03871 0.98842 1.19063 0.91615 0.94385 0.91441
1.59067 1.08498 1.45695 1.07207 1.23040 1.02210 0.92452 0.92313
1.22189 0.80808 1.00360 0.93003 0.91158 1.21757 1.03118 0.97207
0.97841 1.87993 1.23854 1.59940 1.59202 1.22336 0.96755 0.91903
0.86138 0.91385 1.21749 0.90862 1.03598 1.03364 1.23208 0.84399
1.03232 1.00134 1.22659 1.02720 1.04668 0.92331 1.23483 0.89272
0.93545 0.99701 1.68682 1.09776 1.11861 1.26694 0.90815 0.92327
0.92960 0.94507 0.92594 0.87712 0.95317 0.92281 0.85412 0.93373
0.89601 0.90333 0.89842 0.92000 0.91811 0.88773 0.91065 0.87104
0.92122 0.80972 0.79865
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.55 9.91 71.98 0.71 -3.84 16
2 C -0.12 -5.35 6.22 30.60 0.19 -5.16 16
3 C 0.11 5.62 4.88 86.38 0.42 6.04 16
4 N -0.42 -23.14 2.51 -638.64 -1.60 -24.74 16
5 C -0.30 -16.05 7.47 84.13 0.63 -15.42 16
6 H 0.12 5.94 5.97 -2.91 -0.02 5.92 16
7 C -0.01 -0.32 5.35 84.98 0.45 0.13 16
8 N -0.91 -50.46 10.98 21.69 0.24 -50.22 16
9 Si 0.99 41.41 29.55 68.60 2.03 43.44 16
10 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16
11 H -0.29 -11.87 7.11 99.48 0.71 -11.17 16
12 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16
13 C 0.49 26.66 7.57 86.84 0.66 27.32 16
14 O -0.63 -36.40 15.98 -3.90 -0.06 -36.46 16
15 C 0.11 4.93 6.66 41.80 0.28 5.20 16
16 C -0.15 -6.08 8.81 22.77 0.20 -5.88 16
17 C 0.14 4.31 5.65 38.55 0.22 4.53 16
18 N -0.49 -12.27 4.77 -693.77 -3.31 -15.58 16
19 C 0.03 0.62 4.69 86.31 0.41 1.02 16
20 C 0.09 1.88 3.43 30.63 0.10 1.99 16
21 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
22 C -0.14 -2.30 9.57 71.98 0.69 -1.61 16
23 O -0.39 -8.00 10.11 -148.98 -1.51 -9.51 16
24 C 0.09 1.44 3.42 30.63 0.10 1.54 16
25 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16
26 C -0.14 -1.55 9.57 71.98 0.69 -0.86 16
27 C 0.02 0.30 3.63 86.31 0.31 0.62 16
28 C -0.20 -5.32 8.89 22.56 0.20 -5.12 16
29 C 0.10 3.16 11.17 84.72 0.95 4.11 16
30 N -0.46 -19.64 6.37 -185.24 -1.18 -20.82 16
31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16
32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16
33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16
34 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16
35 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16
36 H 0.11 5.69 5.51 -2.39 -0.01 5.68 16
37 H 0.03 1.56 7.53 -2.39 -0.02 1.54 16
38 H 0.27 14.00 8.31 -92.70 -0.77 13.23 16
39 H 0.13 5.20 6.86 -2.91 -0.02 5.18 16
40 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16
41 H 0.09 2.26 6.92 -2.39 -0.02 2.24 16
42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16
43 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16
44 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
45 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16
46 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16
47 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16
48 H 0.11 1.65 7.26 -2.39 -0.02 1.64 16
49 H 0.06 1.10 7.57 -2.39 -0.02 1.08 16
50 H 0.17 3.06 5.96 -2.91 -0.02 3.05 16
51 H 0.18 4.48 8.06 -2.91 -0.02 4.46 16
Total: -1.00 -70.33 402.40 2.74 -67.59
By element:
Atomic # 1 Polarization: 30.77 SS G_CDS: 0.92 Total: 31.69 kcal
Atomic # 6 Polarization: 7.39 SS G_CDS: 7.21 Total: 14.61 kcal
Atomic # 7 Polarization: -105.50 SS G_CDS: -5.85 Total: -111.36 kcal
Atomic # 8 Polarization: -44.40 SS G_CDS: -1.57 Total: -45.97 kcal
Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal
Total: -70.33 2.74 -67.59 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000188711185.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.375 kcal
(2) G-P(sol) polarization free energy of solvation -70.330 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.956 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.594 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.219 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds