Wall clock time and date at job start Wed Apr 1 2020 05:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47299 * 2 1 4 4 N 1.46504 * 109.47072 * 180.02562 * 3 2 1 5 5 C 1.36784 * 120.00144 * 264.11571 * 4 3 2 6 6 H 1.07993 * 120.00197 * 134.46346 * 5 4 3 7 7 C 1.39103 * 119.99717 * 314.46396 * 5 4 3 8 8 N 1.31333 * 120.00005 * 165.82440 * 7 5 4 9 9 Si 1.86796 * 120.00194 * 345.82337 * 7 5 4 10 10 H 1.48496 * 109.46991 * 94.86729 * 9 7 5 11 11 H 1.48501 * 109.47243 * 214.86599 * 9 7 5 12 12 H 1.48499 * 109.47326 * 334.86647 * 9 7 5 13 13 C 1.34783 * 119.99785 * 84.11566 * 4 3 2 14 14 O 1.21565 * 119.99758 * 4.16507 * 13 4 3 15 15 C 1.48019 * 119.99935 * 184.16882 * 13 4 3 16 16 C 1.39135 * 119.69752 * 174.08979 * 15 13 4 17 17 C 1.39403 * 118.95154 * 180.25187 * 16 15 13 18 18 N 1.39192 * 120.83249 * 179.72658 * 17 16 15 19 19 C 1.47021 * 110.99880 * 303.63810 * 18 17 16 20 20 C 1.53104 * 109.25673 * 177.60546 * 19 18 17 21 21 H 1.08995 * 109.53414 * 176.80430 * 20 19 18 22 22 C 1.52998 * 109.50567 * 296.91075 * 20 19 18 23 23 O 1.43016 * 109.26084 * 56.84640 * 20 19 18 24 24 C 1.43014 * 113.73785 * 301.32933 * 23 20 19 25 25 H 1.08997 * 109.50976 * 298.73801 * 24 23 20 26 26 C 1.52994 * 109.50787 * 178.60380 * 24 23 20 27 27 C 1.47012 * 111.00694 * 179.97438 * 18 17 16 28 28 C 1.39457 * 118.34274 * 359.50868 * 17 16 15 29 29 C 1.38224 * 119.28041 * 0.51521 * 28 17 16 30 30 N 1.31654 * 121.00393 * 359.72907 * 29 28 17 31 31 H 1.08992 * 109.47423 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47140 * 300.00292 * 1 2 3 33 33 H 1.09003 * 109.47393 * 59.99780 * 1 2 3 34 34 H 1.09005 * 109.46498 * 240.00095 * 2 1 3 35 35 H 1.08994 * 109.47509 * 120.00350 * 2 1 3 36 36 H 1.08999 * 109.46871 * 60.00611 * 3 2 1 37 37 H 1.09001 * 109.47287 * 299.99921 * 3 2 1 38 38 H 0.96996 * 120.00403 * 179.97438 * 8 7 5 39 39 H 1.07996 * 120.52352 * 359.97438 * 16 15 13 40 40 H 1.09001 * 109.49892 * 297.53566 * 19 18 17 41 41 H 1.08998 * 109.50714 * 57.66986 * 19 18 17 42 42 H 1.08998 * 109.46989 * 179.78440 * 22 20 19 43 43 H 1.09006 * 109.46896 * 299.78687 * 22 20 19 44 44 H 1.08999 * 109.47243 * 59.78698 * 22 20 19 45 45 H 1.08999 * 109.47194 * 300.21712 * 26 24 23 46 46 H 1.09000 * 109.47346 * 60.21593 * 26 24 23 47 47 H 1.09005 * 109.47566 * 180.21769 * 26 24 23 48 48 H 1.09006 * 109.50303 * 302.32815 * 27 18 17 49 49 H 1.08999 * 109.50523 * 62.41115 * 27 18 17 50 50 H 1.08002 * 120.36050 * 180.23631 * 28 17 16 51 51 H 1.08002 * 119.49858 * 179.74462 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1895 1.5637 1.1774 6 1 5.0269 0.9140 1.3848 7 6 3.8069 2.5238 2.1084 8 7 4.2664 2.4666 3.3374 9 14 2.6396 3.8945 1.6106 10 1 1.2480 3.5103 1.9585 11 1 3.0037 5.1409 2.3311 12 1 2.7389 4.1221 0.1466 13 6 4.1784 1.3229 -1.1620 14 8 3.5725 1.2914 -2.2154 15 6 5.6557 1.2300 -1.1549 16 6 6.3366 0.9832 -2.3428 17 6 7.7275 0.8935 -2.3173 18 7 8.4477 0.6423 -3.4816 19 6 7.9956 -0.6010 -4.1229 20 6 8.7705 -0.8072 -5.4272 21 1 8.4796 -1.7560 -5.8778 22 6 8.4557 0.3357 -6.3945 23 8 10.1725 -0.8220 -5.1456 24 6 10.6471 0.3740 -4.5214 25 1 10.4774 1.2225 -5.1841 26 6 12.1438 0.2408 -4.2334 27 6 9.8913 0.5928 -3.2080 28 6 8.3798 1.0663 -1.0968 29 6 7.6327 1.3081 0.0407 30 7 6.3194 1.3824 -0.0136 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8932 -0.5139 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 1.6768 1.9563 0.8900 37 1 1.6767 1.9564 -0.8900 38 1 4.0000 3.1363 3.9865 39 1 5.7959 0.8587 -3.2693 40 1 8.1779 -1.4424 -3.4543 41 1 6.9297 -0.5319 -4.3398 42 1 9.0105 0.1904 -7.3213 43 1 7.3869 0.3464 -6.6086 44 1 8.7453 1.2844 -5.9426 45 1 12.3123 -0.6091 -3.5721 46 1 12.6813 0.0855 -5.1689 47 1 12.5041 1.1511 -3.7542 48 1 10.2088 1.5331 -2.7572 49 1 10.1041 -0.2288 -2.5241 50 1 9.4567 1.0072 -1.0403 51 1 8.1340 1.4383 0.9885 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188711204.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:18 Heat of formation + Delta-G solvation = -11.393360 kcal Electronic energy + Delta-G solvation = -31737.579363 eV Core-core repulsion = 27638.238530 eV Total energy + Delta-G solvation = -4099.340833 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.89892 -39.58904 -38.30360 -36.10552 -35.32601 -33.75309 -33.00877 -31.65763 -31.20131 -30.79664 -29.62726 -27.37031 -26.15602 -25.55146 -24.86419 -23.49504 -22.53479 -21.82099 -21.15566 -19.83731 -19.20311 -18.01200 -16.88350 -16.72741 -16.36970 -15.92118 -15.55795 -15.39641 -15.11840 -14.81916 -14.57683 -14.37357 -14.29001 -13.98295 -13.67101 -13.60742 -13.23071 -13.11170 -12.85877 -12.70937 -12.51239 -12.38877 -12.28675 -12.14175 -12.02708 -11.81768 -11.61019 -11.47918 -11.34308 -11.20936 -10.99450 -10.85701 -10.61726 -10.51894 -10.27809 -10.03086 -9.82795 -9.61671 -9.24738 -8.99029 -8.65986 -8.37340 -8.10733 -7.54149 -6.31750 -3.93024 1.28098 1.70416 3.09392 3.24574 3.34012 3.37518 3.49654 3.65279 4.19257 4.25854 4.45913 4.54398 4.62806 4.68937 4.80163 4.89432 4.91001 5.06915 5.10300 5.15742 5.23267 5.26285 5.29131 5.41207 5.45605 5.51285 5.55765 5.59426 5.61874 5.66454 5.69596 5.74754 5.80212 5.85214 5.95444 6.04165 6.09265 6.12842 6.18962 6.29190 6.33136 6.34489 6.41344 6.71896 6.80360 6.84667 6.90378 6.96175 7.26009 7.45455 8.13183 8.53530 8.65894 9.05691 9.37873 9.66470 10.75410 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016041 B = 0.002982 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.081663 B = 9385.942655 C =10490.384548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.099 3.901 4 N -0.437 5.437 5 C -0.304 4.304 6 H 0.137 0.863 7 C 0.066 3.934 8 N -0.861 5.861 9 Si 0.866 3.134 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.263 1.263 13 C 0.514 3.486 14 O -0.597 6.597 15 C 0.129 3.871 16 C -0.148 4.148 17 C 0.130 3.870 18 N -0.481 5.481 19 C 0.025 3.975 20 C 0.091 3.909 21 H 0.109 0.891 22 C -0.178 4.178 23 O -0.377 6.377 24 C 0.085 3.915 25 H 0.071 0.929 26 C -0.144 4.144 27 C 0.020 3.980 28 C -0.224 4.224 29 C 0.110 3.890 30 N -0.414 5.414 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.272 0.728 39 H 0.139 0.861 40 H 0.053 0.947 41 H 0.097 0.903 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.093 0.907 49 H 0.056 0.944 50 H 0.129 0.871 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.577 -4.992 -12.226 16.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.024 4.024 4 N -0.154 5.154 5 C -0.432 4.432 6 H 0.154 0.846 7 C -0.140 4.140 8 N -0.498 5.498 9 Si 0.694 3.306 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.187 1.187 13 C 0.303 3.697 14 O -0.483 6.483 15 C -0.009 4.009 16 C -0.172 4.172 17 C 0.025 3.975 18 N -0.196 5.196 19 C -0.101 4.101 20 C 0.033 3.967 21 H 0.127 0.873 22 C -0.235 4.235 23 O -0.296 6.296 24 C 0.027 3.973 25 H 0.089 0.911 26 C -0.202 4.202 27 C -0.107 4.107 28 C -0.247 4.247 29 C -0.049 4.049 30 N -0.126 5.126 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.157 0.843 40 H 0.072 0.928 41 H 0.115 0.885 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.111 0.889 49 H 0.074 0.926 50 H 0.147 0.853 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 9.812 -4.548 -12.200 16.304 hybrid contribution -0.090 0.500 -0.084 0.515 sum 9.722 -4.049 -12.284 16.181 Atomic orbital electron populations 1.21702 0.96173 1.01126 1.01478 1.21761 0.94986 0.97658 1.02527 1.21760 0.82396 0.96868 1.01367 1.43766 1.04116 1.60959 1.06534 1.19793 1.14493 1.18059 0.90894 0.84624 1.25402 0.96738 0.96898 0.94968 1.69629 1.43410 1.34509 1.02247 0.87066 0.80853 0.82638 0.80055 1.20143 1.21420 1.18715 1.18011 0.85401 0.82502 0.83772 1.90626 1.68778 1.57666 1.31203 1.21162 0.95122 0.96082 0.88547 1.21635 0.92061 1.03545 0.99917 1.18953 0.92565 0.97589 0.88417 1.59078 1.03994 1.33728 1.22850 1.22978 1.01465 0.89533 0.96129 1.22296 0.80797 1.00120 0.93512 0.87281 1.22312 1.02504 0.99698 0.99033 1.88040 1.23201 1.38456 1.79917 1.22188 0.94035 0.88588 0.92455 0.91094 1.21744 0.92961 1.02796 1.02675 1.23012 0.86711 1.02848 0.98145 1.22319 1.01027 1.08454 0.92912 1.22977 0.90484 0.93907 0.97566 1.68986 1.07603 1.09770 1.26226 0.92964 0.92901 0.92976 0.91952 0.91254 0.91148 0.91483 0.91719 0.84320 0.92844 0.88488 0.92232 0.91301 0.91039 0.91746 0.91475 0.90804 0.88882 0.92572 0.85312 0.82897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 37.16 0.37 -1.91 16 2 C -0.13 -2.51 6.21 -26.73 -0.17 -2.67 16 3 C 0.10 2.20 3.88 -4.04 -0.02 2.19 16 4 N -0.44 -10.80 2.07 -115.83 -0.24 -11.04 16 5 C -0.30 -8.00 8.02 -15.02 -0.12 -8.12 16 6 H 0.14 3.77 6.06 -52.49 -0.32 3.46 16 7 C 0.07 1.77 5.35 -17.44 -0.09 1.67 16 8 N -0.86 -23.81 13.95 55.50 0.77 -23.03 16 9 Si 0.87 20.89 24.91 -169.99 -4.23 16.65 16 10 H -0.27 -6.29 6.81 56.52 0.38 -5.91 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.26 -6.56 7.10 56.52 0.40 -6.16 16 13 C 0.51 12.56 7.57 -12.25 -0.09 12.47 16 14 O -0.60 -15.11 15.99 5.31 0.08 -15.03 16 15 C 0.13 2.84 6.66 -83.06 -0.55 2.29 16 16 C -0.15 -2.75 8.81 -38.81 -0.34 -3.10 16 17 C 0.13 2.03 5.65 -83.63 -0.47 1.55 16 18 N -0.48 -6.18 4.14 -170.62 -0.71 -6.88 16 19 C 0.02 0.29 4.83 -3.70 -0.02 0.27 16 20 C 0.09 0.90 3.92 -26.68 -0.10 0.80 16 21 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 22 C -0.18 -1.67 8.88 37.16 0.33 -1.34 16 23 O -0.38 -4.13 10.28 -35.23 -0.36 -4.49 16 24 C 0.09 0.81 3.03 -26.68 -0.08 0.73 16 25 H 0.07 0.68 6.49 -51.93 -0.34 0.34 16 26 C -0.14 -1.06 9.57 37.15 0.36 -0.70 16 27 C 0.02 0.21 3.63 -3.71 -0.01 0.20 16 28 C -0.22 -3.33 8.89 -39.13 -0.35 -3.68 16 29 C 0.11 1.93 11.17 -17.63 -0.20 1.73 16 30 N -0.41 -9.04 6.32 -9.90 -0.06 -9.10 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.07 1.60 4.08 -51.93 -0.21 1.39 16 37 H 0.07 1.49 7.55 -51.93 -0.39 1.10 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.14 2.54 6.88 -52.49 -0.36 2.18 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 1.15 6.93 -51.93 -0.36 0.79 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.75 6.13 -51.93 -0.32 0.43 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.09 0.92 7.25 -51.93 -0.38 0.54 16 49 H 0.06 0.61 7.58 -51.93 -0.39 0.21 16 50 H 0.13 1.51 5.95 -52.49 -0.31 1.20 16 51 H 0.15 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 393.61 15.07 5.93 5.93 Total: -1.00 -30.64 393.61 -8.40 -39.04 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -8.03 Total: 5.57 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -1.56 Total: 2.39 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.23 Total: -50.06 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.28 Total: -19.52 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.23 Total: 16.65 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.64 -8.40 -39.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188711204.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.646 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds