Wall clock time and date at job start Wed Apr 1 2020 05:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47299 * 2 1 4 4 N 1.46504 * 109.47072 * 180.02562 * 3 2 1 5 5 C 1.36784 * 120.00144 * 264.11571 * 4 3 2 6 6 H 1.07993 * 120.00197 * 134.46346 * 5 4 3 7 7 C 1.39103 * 119.99717 * 314.46396 * 5 4 3 8 8 N 1.31333 * 120.00005 * 165.82440 * 7 5 4 9 9 Si 1.86796 * 120.00194 * 345.82337 * 7 5 4 10 10 H 1.48496 * 109.46991 * 94.86729 * 9 7 5 11 11 H 1.48501 * 109.47243 * 214.86599 * 9 7 5 12 12 H 1.48499 * 109.47326 * 334.86647 * 9 7 5 13 13 C 1.34783 * 119.99785 * 84.11566 * 4 3 2 14 14 O 1.21565 * 119.99758 * 4.16507 * 13 4 3 15 15 C 1.48019 * 119.99935 * 184.16882 * 13 4 3 16 16 C 1.39135 * 119.69752 * 174.08979 * 15 13 4 17 17 C 1.39403 * 118.95154 * 180.25187 * 16 15 13 18 18 N 1.39192 * 120.83249 * 179.72658 * 17 16 15 19 19 C 1.47021 * 110.99880 * 303.63810 * 18 17 16 20 20 C 1.53104 * 109.25673 * 177.60546 * 19 18 17 21 21 H 1.08995 * 109.53414 * 176.80430 * 20 19 18 22 22 C 1.52998 * 109.50567 * 296.91075 * 20 19 18 23 23 O 1.43016 * 109.26084 * 56.84640 * 20 19 18 24 24 C 1.43014 * 113.73785 * 301.32933 * 23 20 19 25 25 H 1.08997 * 109.50976 * 298.73801 * 24 23 20 26 26 C 1.52994 * 109.50787 * 178.60380 * 24 23 20 27 27 C 1.47012 * 111.00694 * 179.97438 * 18 17 16 28 28 C 1.39457 * 118.34274 * 359.50868 * 17 16 15 29 29 C 1.38224 * 119.28041 * 0.51521 * 28 17 16 30 30 N 1.31654 * 121.00393 * 359.72907 * 29 28 17 31 31 H 1.08992 * 109.47423 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47140 * 300.00292 * 1 2 3 33 33 H 1.09003 * 109.47393 * 59.99780 * 1 2 3 34 34 H 1.09005 * 109.46498 * 240.00095 * 2 1 3 35 35 H 1.08994 * 109.47509 * 120.00350 * 2 1 3 36 36 H 1.08999 * 109.46871 * 60.00611 * 3 2 1 37 37 H 1.09001 * 109.47287 * 299.99921 * 3 2 1 38 38 H 0.96996 * 120.00403 * 179.97438 * 8 7 5 39 39 H 1.07996 * 120.52352 * 359.97438 * 16 15 13 40 40 H 1.09001 * 109.49892 * 297.53566 * 19 18 17 41 41 H 1.08998 * 109.50714 * 57.66986 * 19 18 17 42 42 H 1.08998 * 109.46989 * 179.78440 * 22 20 19 43 43 H 1.09006 * 109.46896 * 299.78687 * 22 20 19 44 44 H 1.08999 * 109.47243 * 59.78698 * 22 20 19 45 45 H 1.08999 * 109.47194 * 300.21712 * 26 24 23 46 46 H 1.09000 * 109.47346 * 60.21593 * 26 24 23 47 47 H 1.09005 * 109.47566 * 180.21769 * 26 24 23 48 48 H 1.09006 * 109.50303 * 302.32815 * 27 18 17 49 49 H 1.08999 * 109.50523 * 62.41115 * 27 18 17 50 50 H 1.08002 * 120.36050 * 180.23631 * 28 17 16 51 51 H 1.08002 * 119.49858 * 179.74462 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1895 1.5637 1.1774 6 1 5.0269 0.9140 1.3848 7 6 3.8069 2.5238 2.1084 8 7 4.2664 2.4666 3.3374 9 14 2.6396 3.8945 1.6106 10 1 1.2480 3.5103 1.9585 11 1 3.0037 5.1409 2.3311 12 1 2.7389 4.1221 0.1466 13 6 4.1784 1.3229 -1.1620 14 8 3.5725 1.2914 -2.2154 15 6 5.6557 1.2300 -1.1549 16 6 6.3366 0.9832 -2.3428 17 6 7.7275 0.8935 -2.3173 18 7 8.4477 0.6423 -3.4816 19 6 7.9956 -0.6010 -4.1229 20 6 8.7705 -0.8072 -5.4272 21 1 8.4796 -1.7560 -5.8778 22 6 8.4557 0.3357 -6.3945 23 8 10.1725 -0.8220 -5.1456 24 6 10.6471 0.3740 -4.5214 25 1 10.4774 1.2225 -5.1841 26 6 12.1438 0.2408 -4.2334 27 6 9.8913 0.5928 -3.2080 28 6 8.3798 1.0663 -1.0968 29 6 7.6327 1.3081 0.0407 30 7 6.3194 1.3824 -0.0136 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8932 -0.5139 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 1.6768 1.9563 0.8900 37 1 1.6767 1.9564 -0.8900 38 1 4.0000 3.1363 3.9865 39 1 5.7959 0.8587 -3.2693 40 1 8.1779 -1.4424 -3.4543 41 1 6.9297 -0.5319 -4.3398 42 1 9.0105 0.1904 -7.3213 43 1 7.3869 0.3464 -6.6086 44 1 8.7453 1.2844 -5.9426 45 1 12.3123 -0.6091 -3.5721 46 1 12.6813 0.0855 -5.1689 47 1 12.5041 1.1511 -3.7542 48 1 10.2088 1.5331 -2.7572 49 1 10.1041 -0.2288 -2.5241 50 1 9.4567 1.0072 -1.0403 51 1 8.1340 1.4383 0.9885 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188711204.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:17 Heat of formation + Delta-G solvation = -30.103070 kcal Electronic energy + Delta-G solvation = -31738.390677 eV Core-core repulsion = 27638.238530 eV Total energy + Delta-G solvation = -4100.152147 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.06794 -41.01776 -39.83725 -37.24063 -37.19621 -34.70826 -34.50944 -33.49909 -32.37242 -32.21298 -30.60713 -28.34246 -27.64868 -26.98664 -26.38131 -24.65270 -23.83027 -22.97759 -22.68932 -21.08362 -20.54454 -19.64409 -18.24252 -18.05251 -17.56321 -17.33972 -16.83082 -16.65648 -16.44932 -16.09562 -16.02737 -15.70937 -15.64302 -15.50389 -15.14605 -14.91574 -14.61088 -14.58470 -14.15341 -13.99086 -13.90772 -13.40515 -13.30808 -13.26861 -13.18878 -13.04279 -12.82341 -12.68783 -12.61706 -12.52748 -12.27748 -12.14048 -12.09859 -11.94892 -11.54473 -11.47000 -11.38258 -11.17105 -10.82506 -10.52742 -10.18417 -10.05782 -9.43869 -9.26837 -8.32580 -5.98029 -0.20795 0.33293 1.17498 1.29120 1.39052 1.87879 2.22194 2.29848 2.60131 2.73977 2.97011 3.08566 3.58171 3.61058 3.71509 3.75784 3.94396 3.96820 3.97206 4.08565 4.11323 4.14114 4.21997 4.34067 4.34844 4.37860 4.39308 4.52644 4.56579 4.59587 4.61967 4.64102 4.69594 4.77255 4.88521 4.90182 4.92659 4.94726 5.02393 5.09246 5.11334 5.21473 5.27610 5.32516 5.35522 5.49736 5.58157 5.72339 5.99921 6.18834 6.19509 6.54422 6.94491 7.21581 7.43275 7.72459 8.77035 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016041 B = 0.002982 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.081663 B = 9385.942655 C =10490.384548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C 0.093 3.907 4 N -0.451 5.451 5 C -0.298 4.298 6 H 0.116 0.884 7 C 0.031 3.969 8 N -0.899 5.899 9 Si 0.909 3.091 10 H -0.254 1.254 11 H -0.286 1.286 12 H -0.280 1.280 13 C 0.509 3.491 14 O -0.613 6.613 15 C 0.096 3.904 16 C -0.148 4.148 17 C 0.141 3.859 18 N -0.482 5.482 19 C 0.024 3.976 20 C 0.093 3.907 21 H 0.127 0.873 22 C -0.174 4.174 23 O -0.387 6.387 24 C 0.084 3.916 25 H 0.071 0.929 26 C -0.140 4.140 27 C 0.016 3.984 28 C -0.197 4.197 29 C 0.100 3.900 30 N -0.455 5.455 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.275 0.725 39 H 0.136 0.864 40 H 0.050 0.950 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.070 0.930 47 H 0.091 0.909 48 H 0.106 0.894 49 H 0.061 0.939 50 H 0.171 0.829 51 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.150 -5.366 -13.601 19.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.162 4.162 3 C -0.029 4.029 4 N -0.169 5.169 5 C -0.426 4.426 6 H 0.133 0.867 7 C -0.171 4.171 8 N -0.538 5.538 9 Si 0.736 3.264 10 H -0.180 1.180 11 H -0.213 1.213 12 H -0.205 1.205 13 C 0.300 3.700 14 O -0.499 6.499 15 C -0.041 4.041 16 C -0.172 4.172 17 C 0.035 3.965 18 N -0.198 5.198 19 C -0.101 4.101 20 C 0.036 3.964 21 H 0.144 0.856 22 C -0.231 4.231 23 O -0.307 6.307 24 C 0.027 3.973 25 H 0.089 0.911 26 C -0.198 4.198 27 C -0.110 4.110 28 C -0.221 4.221 29 C -0.059 4.059 30 N -0.167 5.167 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.153 0.847 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.109 0.891 48 H 0.124 0.876 49 H 0.079 0.921 50 H 0.188 0.812 51 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 11.380 -4.933 -13.585 18.395 hybrid contribution -0.356 0.542 0.131 0.662 sum 11.024 -4.391 -13.453 17.939 Atomic orbital electron populations 1.21674 0.92964 1.03006 1.02168 1.21689 0.97724 0.95253 1.01510 1.21888 0.81342 0.98843 1.00812 1.43877 1.05037 1.61818 1.06180 1.19558 1.14099 1.17797 0.91194 0.86653 1.25784 0.98168 0.98235 0.94937 1.69686 1.45474 1.35613 1.02980 0.86390 0.80781 0.80803 0.78425 1.17976 1.21286 1.20547 1.18538 0.86893 0.81180 0.83436 1.90581 1.69723 1.58046 1.31600 1.20912 0.94011 0.99230 0.89963 1.21594 0.93535 1.03485 0.98584 1.19061 0.91586 0.96080 0.89772 1.59050 1.05260 1.34261 1.21192 1.23031 1.01530 0.88633 0.96950 1.22367 0.80340 1.01201 0.92532 0.85573 1.22269 1.02738 0.98822 0.99270 1.88045 1.23398 1.39217 1.80019 1.22314 0.95139 0.88215 0.91663 0.91073 1.21757 0.91250 1.03687 1.03077 1.23195 0.84918 1.03703 0.99223 1.22655 1.02830 1.05192 0.91389 1.23340 0.89315 0.93770 0.99498 1.68747 1.09924 1.11295 1.26715 0.90525 0.92351 0.92137 0.92892 0.92263 0.91578 0.91874 0.91522 0.84659 0.93182 0.89168 0.91123 0.91205 0.92190 0.91819 0.91078 0.89055 0.87567 0.92124 0.81176 0.80954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 9.91 71.98 0.71 -3.43 16 2 C -0.12 -4.76 6.21 30.59 0.19 -4.57 16 3 C 0.09 4.24 3.88 86.38 0.34 4.57 16 4 N -0.45 -23.04 2.07 -638.64 -1.32 -24.36 16 5 C -0.30 -16.21 8.02 84.13 0.67 -15.54 16 6 H 0.12 6.72 6.06 -2.91 -0.02 6.70 16 7 C 0.03 1.71 5.35 84.97 0.45 2.17 16 8 N -0.90 -50.89 13.95 21.69 0.30 -50.59 16 9 Si 0.91 43.70 24.91 68.60 1.71 45.41 16 10 H -0.25 -11.25 6.81 99.48 0.68 -10.58 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.28 -14.11 7.10 99.48 0.71 -13.41 16 13 C 0.51 25.76 7.57 86.84 0.66 26.42 16 14 O -0.61 -31.89 15.99 -3.92 -0.06 -31.95 16 15 C 0.10 4.33 6.66 41.79 0.28 4.61 16 16 C -0.15 -5.53 8.81 22.77 0.20 -5.33 16 17 C 0.14 4.18 5.65 38.55 0.22 4.40 16 18 N -0.48 -11.35 4.14 -693.73 -2.87 -14.22 16 19 C 0.02 0.53 4.83 86.31 0.42 0.94 16 20 C 0.09 1.66 3.92 30.63 0.12 1.78 16 21 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 22 C -0.17 -2.92 8.88 71.98 0.64 -2.28 16 23 O -0.39 -7.46 10.28 -148.98 -1.53 -8.99 16 24 C 0.08 1.36 3.03 30.62 0.09 1.45 16 25 H 0.07 1.16 6.49 -2.39 -0.02 1.14 16 26 C -0.14 -1.59 9.57 71.98 0.69 -0.91 16 27 C 0.02 0.29 3.63 86.31 0.31 0.60 16 28 C -0.20 -5.39 8.89 22.56 0.20 -5.19 16 29 C 0.10 3.43 11.17 84.72 0.95 4.37 16 30 N -0.45 -20.25 6.32 -185.25 -1.17 -21.42 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.07 3.02 4.08 -2.39 -0.01 3.01 16 37 H 0.06 2.86 7.55 -2.39 -0.02 2.85 16 38 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 39 H 0.14 5.05 6.88 -2.91 -0.02 5.03 16 40 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 2.08 6.93 -2.39 -0.02 2.06 16 42 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.06 1.15 6.13 -2.39 -0.01 1.13 16 45 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 48 H 0.11 1.64 7.25 -2.38 -0.02 1.63 16 49 H 0.06 1.07 7.58 -2.39 -0.02 1.06 16 50 H 0.17 3.23 5.95 -2.91 -0.02 3.22 16 51 H 0.17 5.07 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -68.43 393.61 3.10 -65.33 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.90 Total: 26.73 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 7.14 Total: 14.07 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -5.06 Total: -110.59 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -1.59 Total: -40.94 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.71 Total: 45.41 kcal Total: -68.43 3.10 -65.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188711204.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.227 kcal (2) G-P(sol) polarization free energy of solvation -68.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds