Wall clock time and date at job start Wed Apr 1 2020 05:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47366 * 2 1 4 4 N 1.46499 * 109.47136 * 180.02562 * 3 2 1 5 5 C 1.36795 * 120.00234 * 96.66390 * 4 3 2 6 6 H 1.07998 * 119.99717 * 210.04989 * 5 4 3 7 7 C 1.39101 * 119.99731 * 30.05415 * 5 4 3 8 8 N 1.31318 * 120.00609 * 36.92497 * 7 5 4 9 9 Si 1.86799 * 119.99656 * 216.92432 * 7 5 4 10 10 H 1.48500 * 109.47552 * 270.00079 * 9 7 5 11 11 H 1.48507 * 109.47302 * 30.00335 * 9 7 5 12 12 H 1.48500 * 109.47290 * 149.99864 * 9 7 5 13 13 C 1.34776 * 119.99972 * 276.65999 * 4 3 2 14 14 O 1.21568 * 120.00120 * 176.01868 * 13 4 3 15 15 C 1.48019 * 119.99843 * 356.02128 * 13 4 3 16 16 C 1.39142 * 119.69912 * 185.47026 * 15 13 4 17 17 C 1.39409 * 118.95439 * 179.73144 * 16 15 13 18 18 N 1.39192 * 120.82855 * 180.26307 * 17 16 15 19 19 C 1.47020 * 110.99983 * 303.90970 * 18 17 16 20 20 C 1.53097 * 109.25614 * 177.60883 * 19 18 17 21 21 H 1.08998 * 109.54297 * 296.89305 * 20 19 18 22 22 C 1.52997 * 109.50591 * 176.78525 * 20 19 18 23 23 O 1.43012 * 109.26122 * 56.84809 * 20 19 18 24 24 C 1.43015 * 113.73878 * 301.33406 * 23 20 19 25 25 H 1.09004 * 109.50820 * 178.60739 * 24 23 20 26 26 C 1.53004 * 109.50649 * 298.72857 * 24 23 20 27 27 C 1.47017 * 110.99755 * 180.27754 * 18 17 16 28 28 C 1.39449 * 118.33970 * 0.53552 * 17 16 15 29 29 C 1.38223 * 119.28434 * 359.72168 * 28 17 16 30 30 N 1.31651 * 121.00197 * 0.02562 * 29 28 17 31 31 H 1.08997 * 109.46959 * 300.00354 * 1 2 3 32 32 H 1.09002 * 109.46893 * 59.99956 * 1 2 3 33 33 H 1.08994 * 109.46878 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46959 * 239.99646 * 2 1 3 35 35 H 1.09002 * 109.46893 * 120.00044 * 2 1 3 36 36 H 1.08997 * 109.47371 * 59.99898 * 3 2 1 37 37 H 1.09002 * 109.47150 * 299.99886 * 3 2 1 38 38 H 0.97000 * 119.99700 * 1.84757 * 8 7 5 39 39 H 1.08001 * 120.52370 * 0.02562 * 16 15 13 40 40 H 1.09001 * 109.50550 * 297.54151 * 19 18 17 41 41 H 1.09003 * 109.50675 * 57.67300 * 19 18 17 42 42 H 1.09009 * 109.47125 * 300.21404 * 22 20 19 43 43 H 1.09002 * 109.47338 * 60.21747 * 22 20 19 44 44 H 1.09003 * 109.47262 * 180.21513 * 22 20 19 45 45 H 1.08990 * 109.47650 * 179.78289 * 26 24 23 46 46 H 1.08999 * 109.46930 * 299.79131 * 26 24 23 47 47 H 1.09005 * 109.46766 * 59.78440 * 26 24 23 48 48 H 1.08993 * 109.50312 * 302.32446 * 27 18 17 49 49 H 1.08999 * 109.50745 * 62.45883 * 27 18 17 50 50 H 1.08005 * 120.36090 * 179.71333 * 28 17 16 51 51 H 1.08006 * 119.50100 * 179.97438 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1886 1.5800 -1.1775 6 1 5.1597 1.1220 -1.2947 7 6 3.6330 2.3098 -2.2232 8 7 2.9329 3.3915 -1.9698 9 14 3.8826 1.7511 -3.9881 10 1 5.1137 2.3755 -4.5357 11 1 4.0191 0.2727 -4.0248 12 1 2.7135 2.1606 -4.8071 13 6 4.1794 1.3068 1.1584 14 8 5.3929 1.2340 1.1507 15 6 3.4425 1.2465 2.4407 16 6 4.1472 1.2216 3.6402 17 6 3.4373 1.1705 4.8390 18 7 4.1025 1.1496 6.0615 19 6 5.0523 0.0292 6.1255 20 6 5.8027 0.0790 7.4590 21 1 6.3886 0.9965 7.5137 22 6 6.7350 -1.1294 7.5660 23 8 4.8588 0.0505 8.5329 24 6 3.9187 1.1278 8.5019 25 1 3.2203 1.0255 9.3325 26 6 4.6633 2.4592 8.6206 27 6 3.1491 1.0887 7.1790 28 6 2.0444 1.1349 4.7825 29 6 1.4169 1.1572 3.5512 30 7 2.1141 1.2108 2.4357 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 1.6768 1.9563 0.8899 37 1 1.6768 1.9563 -0.8900 38 1 2.8257 3.6967 -1.0553 39 1 5.2269 1.2463 3.6428 40 1 4.5096 -0.9129 6.0482 41 1 5.7643 0.1083 5.3039 42 1 6.1487 -2.0467 7.5097 43 1 7.4542 -1.1071 6.7473 44 1 7.2662 -1.0955 8.5172 45 1 3.9469 3.2800 8.5931 46 1 5.2111 2.4863 9.5626 47 1 5.3628 2.5595 7.7907 48 1 2.4720 1.9412 7.1265 49 1 2.5760 0.1635 7.1185 50 1 1.4622 1.0903 5.6911 51 1 0.3383 1.1294 3.5033 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188711229.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:22 Heat of formation + Delta-G solvation = -13.073862 kcal Electronic energy + Delta-G solvation = -31945.285682 eV Core-core repulsion = 27845.871977 eV Total energy + Delta-G solvation = -4099.413705 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.02511 -39.71950 -38.10276 -36.20933 -35.41859 -33.78250 -32.89402 -31.49163 -31.20527 -30.80987 -29.73730 -27.44852 -25.86261 -25.57923 -24.88993 -23.47457 -22.41144 -22.16303 -20.90601 -19.95946 -19.49922 -17.81341 -17.16456 -16.93916 -16.55943 -15.70744 -15.61145 -15.43469 -15.22258 -14.80085 -14.77886 -14.32601 -14.10432 -13.96699 -13.69311 -13.49712 -13.43365 -13.18451 -12.93071 -12.70781 -12.54949 -12.45550 -12.20812 -12.12435 -11.86740 -11.85225 -11.48024 -11.36968 -11.33461 -11.00212 -10.92495 -10.66109 -10.54214 -10.51117 -10.26473 -10.16949 -9.94498 -9.69272 -9.15785 -8.79967 -8.60703 -8.32134 -8.23223 -7.73272 -6.87441 -3.89309 1.13388 1.48898 3.21673 3.30326 3.32088 3.43388 3.51284 3.67059 4.12101 4.38205 4.44600 4.45246 4.57405 4.63980 4.70248 4.80811 4.86620 4.95389 5.02893 5.06703 5.09695 5.14735 5.26061 5.29767 5.36607 5.44256 5.48929 5.60577 5.63287 5.67314 5.74462 5.77884 5.79585 5.85214 5.91991 6.00694 6.03648 6.13016 6.17289 6.39324 6.49189 6.61178 6.62558 6.72732 6.77184 6.90199 7.00986 7.06375 7.34525 7.80584 8.07150 8.24249 8.56546 8.91732 9.33197 9.91956 10.39346 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.002783 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.988658 B =10058.782028 C =10770.685705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.117 4.117 3 C 0.083 3.917 4 N -0.403 5.403 5 C -0.403 4.403 6 H 0.094 0.906 7 C 0.019 3.981 8 N -0.837 5.837 9 Si 1.070 2.930 10 H -0.282 1.282 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.464 3.536 14 O -0.589 6.589 15 C 0.134 3.866 16 C -0.150 4.150 17 C 0.142 3.858 18 N -0.481 5.481 19 C 0.026 3.974 20 C 0.086 3.914 21 H 0.073 0.927 22 C -0.145 4.145 23 O -0.376 6.376 24 C 0.090 3.910 25 H 0.109 0.891 26 C -0.178 4.178 27 C 0.019 3.981 28 C -0.233 4.233 29 C 0.114 3.886 30 N -0.471 5.471 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.281 0.719 39 H 0.141 0.859 40 H 0.054 0.946 41 H 0.097 0.903 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.072 0.928 48 H 0.094 0.906 49 H 0.056 0.944 50 H 0.130 0.870 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.511 -5.279 18.716 19.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C -0.041 4.041 4 N -0.118 5.118 5 C -0.531 4.531 6 H 0.111 0.889 7 C -0.193 4.193 8 N -0.468 5.468 9 Si 0.894 3.106 10 H -0.208 1.208 11 H -0.205 1.205 12 H -0.203 1.203 13 C 0.254 3.746 14 O -0.475 6.475 15 C -0.003 4.003 16 C -0.173 4.173 17 C 0.037 3.963 18 N -0.196 5.196 19 C -0.100 4.100 20 C 0.028 3.972 21 H 0.091 0.909 22 C -0.203 4.203 23 O -0.296 6.296 24 C 0.032 3.968 25 H 0.126 0.874 26 C -0.236 4.236 27 C -0.108 4.108 28 C -0.257 4.257 29 C -0.045 4.045 30 N -0.185 5.185 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.123 0.877 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.159 0.841 40 H 0.072 0.928 41 H 0.116 0.884 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.112 0.888 49 H 0.074 0.926 50 H 0.148 0.852 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.397 -4.630 16.537 17.505 hybrid contribution 0.160 -0.627 2.233 2.325 sum -3.237 -5.257 18.769 19.759 Atomic orbital electron populations 1.21609 0.96417 1.00301 1.01328 1.21620 0.94741 0.98229 1.00916 1.22301 0.80837 0.96908 1.04016 1.43685 1.05479 1.57455 1.05131 1.20398 1.06622 1.36342 0.89740 0.88865 1.26513 0.95406 0.91852 1.05536 1.70708 1.36603 1.14962 1.24515 0.83538 0.77150 0.76467 0.73399 1.20802 1.20543 1.20293 1.17707 0.86688 0.87961 0.82238 1.90595 1.12992 1.58131 1.85762 1.21710 0.89259 0.94393 0.94962 1.21612 1.01693 1.03810 0.90226 1.19028 0.91915 0.95696 0.89631 1.59054 1.17502 1.42178 1.00897 1.23026 0.95766 0.91364 0.99868 1.22205 0.90061 0.99893 0.85020 0.90891 1.21757 0.98620 0.96883 1.03005 1.88045 1.44704 1.48415 1.48408 1.22288 0.90736 0.87487 0.96265 0.87364 1.22315 1.01788 0.96788 1.02694 1.22992 0.94715 1.02530 0.90534 1.22156 0.93814 1.09691 1.00023 1.22712 1.00178 0.94051 0.87595 1.68427 1.07315 1.13732 1.29004 0.92923 0.93189 0.93802 0.92922 0.92709 0.87706 0.90641 0.90825 0.84114 0.92781 0.88432 0.91771 0.90550 0.91385 0.91533 0.92141 0.90951 0.88792 0.92595 0.85195 0.83053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.12 -2.29 5.64 -26.73 -0.15 -2.44 16 3 C 0.08 1.87 4.18 -4.05 -0.02 1.86 16 4 N -0.40 -10.57 2.41 -115.83 -0.28 -10.85 16 5 C -0.40 -11.38 8.88 -15.02 -0.13 -11.51 16 6 H 0.09 2.80 7.70 -52.49 -0.40 2.40 16 7 C 0.02 0.50 4.49 -17.45 -0.08 0.42 16 8 N -0.84 -22.93 12.31 55.50 0.68 -22.25 16 9 Si 1.07 23.29 30.05 -169.99 -5.11 18.18 16 10 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 13 C 0.46 12.11 7.55 -12.25 -0.09 12.01 16 14 O -0.59 -17.11 16.09 5.31 0.09 -17.02 16 15 C 0.13 2.84 6.54 -83.06 -0.54 2.30 16 16 C -0.15 -2.78 8.81 -38.81 -0.34 -3.12 16 17 C 0.14 2.12 5.65 -83.63 -0.47 1.65 16 18 N -0.48 -5.99 4.14 -170.63 -0.71 -6.69 16 19 C 0.03 0.30 4.69 -3.71 -0.02 0.28 16 20 C 0.09 0.87 3.02 -26.68 -0.08 0.79 16 21 H 0.07 0.74 6.49 -51.93 -0.34 0.40 16 22 C -0.15 -1.21 9.57 37.16 0.36 -0.86 16 23 O -0.38 -4.02 10.28 -35.23 -0.36 -4.38 16 24 C 0.09 0.80 3.92 -26.68 -0.10 0.70 16 25 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 26 C -0.18 -1.54 8.89 37.16 0.33 -1.20 16 27 C 0.02 0.19 3.76 -3.71 -0.01 0.18 16 28 C -0.23 -3.09 8.88 -39.14 -0.35 -3.44 16 29 C 0.11 1.65 11.17 -17.63 -0.20 1.46 16 30 N -0.47 -8.72 4.47 -9.90 -0.04 -8.76 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.05 1.10 6.94 -51.93 -0.36 0.74 16 36 H 0.11 2.27 5.09 -55.01 -0.28 1.99 16 37 H 0.08 1.83 5.61 -51.93 -0.29 1.54 16 38 H 0.28 7.87 7.70 -40.82 -0.31 7.56 16 39 H 0.14 2.71 6.86 -52.49 -0.36 2.35 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 1.21 6.92 -51.93 -0.36 0.85 16 42 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.74 6.12 -51.93 -0.32 0.42 16 48 H 0.09 0.84 7.26 -51.93 -0.38 0.46 16 49 H 0.06 0.55 7.57 -51.93 -0.39 0.16 16 50 H 0.13 1.33 5.96 -52.48 -0.31 1.01 16 51 H 0.15 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 394.49 15.07 5.94 5.94 Total: -1.00 -32.07 394.49 -9.30 -41.37 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -7.98 Total: 7.20 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -1.54 Total: -2.74 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.35 Total: -48.55 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.28 Total: -21.41 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.11 Total: 18.18 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.07 -9.30 -41.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188711229.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.296 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds