Wall clock time and date at job start Wed Apr 1 2020 05:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47366 * 2 1 4 4 N 1.46499 * 109.47136 * 180.02562 * 3 2 1 5 5 C 1.36795 * 120.00234 * 96.66390 * 4 3 2 6 6 H 1.07998 * 119.99717 * 210.04989 * 5 4 3 7 7 C 1.39101 * 119.99731 * 30.05415 * 5 4 3 8 8 N 1.31318 * 120.00609 * 36.92497 * 7 5 4 9 9 Si 1.86799 * 119.99656 * 216.92432 * 7 5 4 10 10 H 1.48500 * 109.47552 * 270.00079 * 9 7 5 11 11 H 1.48507 * 109.47302 * 30.00335 * 9 7 5 12 12 H 1.48500 * 109.47290 * 149.99864 * 9 7 5 13 13 C 1.34776 * 119.99972 * 276.65999 * 4 3 2 14 14 O 1.21568 * 120.00120 * 176.01868 * 13 4 3 15 15 C 1.48019 * 119.99843 * 356.02128 * 13 4 3 16 16 C 1.39142 * 119.69912 * 185.47026 * 15 13 4 17 17 C 1.39409 * 118.95439 * 179.73144 * 16 15 13 18 18 N 1.39192 * 120.82855 * 180.26307 * 17 16 15 19 19 C 1.47020 * 110.99983 * 303.90970 * 18 17 16 20 20 C 1.53097 * 109.25614 * 177.60883 * 19 18 17 21 21 H 1.08998 * 109.54297 * 296.89305 * 20 19 18 22 22 C 1.52997 * 109.50591 * 176.78525 * 20 19 18 23 23 O 1.43012 * 109.26122 * 56.84809 * 20 19 18 24 24 C 1.43015 * 113.73878 * 301.33406 * 23 20 19 25 25 H 1.09004 * 109.50820 * 178.60739 * 24 23 20 26 26 C 1.53004 * 109.50649 * 298.72857 * 24 23 20 27 27 C 1.47017 * 110.99755 * 180.27754 * 18 17 16 28 28 C 1.39449 * 118.33970 * 0.53552 * 17 16 15 29 29 C 1.38223 * 119.28434 * 359.72168 * 28 17 16 30 30 N 1.31651 * 121.00197 * 0.02562 * 29 28 17 31 31 H 1.08997 * 109.46959 * 300.00354 * 1 2 3 32 32 H 1.09002 * 109.46893 * 59.99956 * 1 2 3 33 33 H 1.08994 * 109.46878 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46959 * 239.99646 * 2 1 3 35 35 H 1.09002 * 109.46893 * 120.00044 * 2 1 3 36 36 H 1.08997 * 109.47371 * 59.99898 * 3 2 1 37 37 H 1.09002 * 109.47150 * 299.99886 * 3 2 1 38 38 H 0.97000 * 119.99700 * 1.84757 * 8 7 5 39 39 H 1.08001 * 120.52370 * 0.02562 * 16 15 13 40 40 H 1.09001 * 109.50550 * 297.54151 * 19 18 17 41 41 H 1.09003 * 109.50675 * 57.67300 * 19 18 17 42 42 H 1.09009 * 109.47125 * 300.21404 * 22 20 19 43 43 H 1.09002 * 109.47338 * 60.21747 * 22 20 19 44 44 H 1.09003 * 109.47262 * 180.21513 * 22 20 19 45 45 H 1.08990 * 109.47650 * 179.78289 * 26 24 23 46 46 H 1.08999 * 109.46930 * 299.79131 * 26 24 23 47 47 H 1.09005 * 109.46766 * 59.78440 * 26 24 23 48 48 H 1.08993 * 109.50312 * 302.32446 * 27 18 17 49 49 H 1.08999 * 109.50745 * 62.45883 * 27 18 17 50 50 H 1.08005 * 120.36090 * 179.71333 * 28 17 16 51 51 H 1.08006 * 119.50100 * 179.97438 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1886 1.5800 -1.1775 6 1 5.1597 1.1220 -1.2947 7 6 3.6330 2.3098 -2.2232 8 7 2.9329 3.3915 -1.9698 9 14 3.8826 1.7511 -3.9881 10 1 5.1137 2.3755 -4.5357 11 1 4.0191 0.2727 -4.0248 12 1 2.7135 2.1606 -4.8071 13 6 4.1794 1.3068 1.1584 14 8 5.3929 1.2340 1.1507 15 6 3.4425 1.2465 2.4407 16 6 4.1472 1.2216 3.6402 17 6 3.4373 1.1705 4.8390 18 7 4.1025 1.1496 6.0615 19 6 5.0523 0.0292 6.1255 20 6 5.8027 0.0790 7.4590 21 1 6.3886 0.9965 7.5137 22 6 6.7350 -1.1294 7.5660 23 8 4.8588 0.0505 8.5329 24 6 3.9187 1.1278 8.5019 25 1 3.2203 1.0255 9.3325 26 6 4.6633 2.4592 8.6206 27 6 3.1491 1.0887 7.1790 28 6 2.0444 1.1349 4.7825 29 6 1.4169 1.1572 3.5512 30 7 2.1141 1.2108 2.4357 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 1.6768 1.9563 0.8899 37 1 1.6768 1.9563 -0.8900 38 1 2.8257 3.6967 -1.0553 39 1 5.2269 1.2463 3.6428 40 1 4.5096 -0.9129 6.0482 41 1 5.7643 0.1083 5.3039 42 1 6.1487 -2.0467 7.5097 43 1 7.4542 -1.1071 6.7473 44 1 7.2662 -1.0955 8.5172 45 1 3.9469 3.2800 8.5931 46 1 5.2111 2.4863 9.5626 47 1 5.3628 2.5595 7.7907 48 1 2.4720 1.9412 7.1265 49 1 2.5760 0.1635 7.1185 50 1 1.4622 1.0903 5.6911 51 1 0.3383 1.1294 3.5033 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188711229.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:21 Heat of formation + Delta-G solvation = -33.033062 kcal Electronic energy + Delta-G solvation = -31946.151178 eV Core-core repulsion = 27845.871977 eV Total energy + Delta-G solvation = -4100.279201 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.16839 -41.04743 -39.71674 -37.47536 -37.23782 -34.66508 -34.54374 -33.09471 -32.46512 -32.25555 -30.67589 -28.38048 -27.57557 -26.80302 -26.34036 -24.79352 -23.52793 -23.40190 -22.47914 -21.36500 -20.56529 -19.57824 -18.57688 -18.17370 -17.72617 -17.08065 -16.69119 -16.63011 -16.40954 -16.20196 -16.07441 -15.71290 -15.65149 -15.44336 -15.21712 -14.84259 -14.67499 -14.57735 -14.10097 -13.94891 -13.78894 -13.41808 -13.33586 -13.16864 -13.10245 -12.87626 -12.72599 -12.67439 -12.58762 -12.34039 -12.14012 -12.09668 -12.04512 -11.92474 -11.70131 -11.46448 -11.37435 -11.06113 -10.60603 -10.56809 -10.20926 -10.01594 -9.70372 -9.34650 -8.99577 -6.07560 -0.27141 0.21004 1.46575 1.52094 1.80859 1.93345 2.28561 2.37909 2.68505 2.68931 2.90501 3.02396 3.37697 3.54061 3.65033 3.76087 3.88655 3.93769 3.98337 4.05810 4.13797 4.21163 4.29135 4.31088 4.33969 4.36186 4.45674 4.54735 4.56745 4.61920 4.65240 4.69475 4.82552 4.84451 4.87674 4.90711 4.95279 4.99824 5.05123 5.15241 5.18891 5.25428 5.33561 5.34805 5.41567 5.63829 5.69310 5.73627 5.84221 5.96239 6.14401 6.50386 6.80418 6.97038 7.31647 7.88340 8.26081 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.002783 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.988658 B =10058.782028 C =10770.685705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.108 4.108 3 C 0.091 3.909 4 N -0.420 5.420 5 C -0.446 4.446 6 H 0.057 0.943 7 C -0.007 4.007 8 N -0.849 5.849 9 Si 1.117 2.883 10 H -0.272 1.272 11 H -0.273 1.273 12 H -0.262 1.262 13 C 0.454 3.546 14 O -0.636 6.636 15 C 0.107 3.893 16 C -0.159 4.159 17 C 0.151 3.849 18 N -0.487 5.487 19 C 0.027 3.973 20 C 0.091 3.909 21 H 0.070 0.930 22 C -0.143 4.143 23 O -0.385 6.385 24 C 0.088 3.912 25 H 0.137 0.863 26 C -0.176 4.176 27 C 0.015 3.985 28 C -0.203 4.203 29 C 0.116 3.884 30 N -0.484 5.484 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.029 0.971 35 H 0.049 0.951 36 H 0.117 0.883 37 H 0.053 0.947 38 H 0.266 0.734 39 H 0.119 0.881 40 H 0.053 0.947 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.050 0.950 48 H 0.112 0.888 49 H 0.067 0.933 50 H 0.178 0.822 51 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.765 -5.916 21.721 23.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.146 4.146 3 C -0.032 4.032 4 N -0.134 5.134 5 C -0.573 4.573 6 H 0.075 0.925 7 C -0.215 4.215 8 N -0.479 5.479 9 Si 0.936 3.064 10 H -0.197 1.197 11 H -0.198 1.198 12 H -0.186 1.186 13 C 0.245 3.755 14 O -0.526 6.526 15 C -0.029 4.029 16 C -0.183 4.183 17 C 0.045 3.955 18 N -0.202 5.202 19 C -0.098 4.098 20 C 0.033 3.967 21 H 0.088 0.912 22 C -0.201 4.201 23 O -0.305 6.305 24 C 0.030 3.970 25 H 0.154 0.846 26 C -0.233 4.233 27 C -0.111 4.111 28 C -0.226 4.226 29 C -0.043 4.043 30 N -0.198 5.198 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.134 0.866 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.137 0.863 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.130 0.870 49 H 0.085 0.915 50 H 0.195 0.805 51 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -6.673 -5.259 19.570 21.335 hybrid contribution 1.173 -0.438 1.696 2.108 sum -5.501 -5.697 21.266 22.693 Atomic orbital electron populations 1.21548 0.92728 1.02148 1.02215 1.21535 0.97775 0.95781 0.99535 1.22411 0.78715 0.98722 1.03334 1.43874 1.06898 1.57980 1.04676 1.20255 1.06578 1.38461 0.92040 0.92522 1.27863 0.94161 0.90770 1.08698 1.70826 1.38071 1.15642 1.23368 0.82964 0.77947 0.76484 0.69042 1.19730 1.19793 1.18604 1.18575 0.86672 0.86115 0.84119 1.90523 1.15337 1.59589 1.87104 1.20938 0.90585 0.98414 0.92973 1.21477 1.00881 1.04695 0.91250 1.19121 0.92748 0.94395 0.89281 1.58985 1.18211 1.42287 1.00705 1.23011 0.95492 0.90926 1.00419 1.22173 0.90003 1.00486 0.84041 0.91214 1.21763 0.98456 0.96123 1.03722 1.88045 1.45004 1.49214 1.48228 1.22513 0.90779 0.86991 0.96684 0.84586 1.22288 1.01685 0.97224 1.02115 1.23210 0.94539 1.03793 0.89533 1.22660 0.92933 1.05583 1.01451 1.23477 1.01945 0.92196 0.86726 1.68188 1.05848 1.14260 1.31513 0.91020 0.93307 0.91441 0.95168 0.93213 0.86580 0.92838 0.92450 0.86329 0.92894 0.90184 0.91755 0.90188 0.90414 0.90408 0.91539 0.93099 0.86952 0.91530 0.80509 0.78469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 9.91 71.98 0.71 -3.03 16 2 C -0.11 -4.26 5.64 30.59 0.17 -4.09 16 3 C 0.09 4.23 4.18 86.38 0.36 4.59 16 4 N -0.42 -23.50 2.41 -638.66 -1.54 -25.05 16 5 C -0.45 -27.08 8.88 84.13 0.75 -26.33 16 6 H 0.06 3.75 7.70 -2.91 -0.02 3.72 16 7 C -0.01 -0.42 4.49 84.98 0.38 -0.03 16 8 N -0.85 -48.37 12.31 21.69 0.27 -48.11 16 9 Si 1.12 48.47 30.05 68.60 2.06 50.53 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 12 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 13 C 0.45 25.43 7.55 86.84 0.66 26.08 16 14 O -0.64 -40.29 16.09 -3.93 -0.06 -40.35 16 15 C 0.11 4.66 6.54 41.80 0.27 4.93 16 16 C -0.16 -6.05 8.81 22.77 0.20 -5.84 16 17 C 0.15 4.19 5.65 38.55 0.22 4.40 16 18 N -0.49 -11.07 4.14 -693.75 -2.87 -13.95 16 19 C 0.03 0.62 4.69 86.31 0.41 1.02 16 20 C 0.09 1.72 3.02 30.63 0.09 1.81 16 21 H 0.07 1.37 6.49 -2.39 -0.02 1.35 16 22 C -0.14 -2.24 9.57 71.98 0.69 -1.55 16 23 O -0.39 -7.18 10.28 -148.98 -1.53 -8.71 16 24 C 0.09 1.24 3.92 30.63 0.12 1.36 16 25 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 26 C -0.18 -2.55 8.89 71.98 0.64 -1.91 16 27 C 0.02 0.23 3.76 86.31 0.32 0.56 16 28 C -0.20 -4.42 8.88 22.56 0.20 -4.22 16 29 C 0.12 2.87 11.17 84.72 0.95 3.82 16 30 N -0.48 -17.35 4.47 -185.24 -0.83 -18.18 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.05 2.00 6.94 -2.39 -0.02 1.98 16 36 H 0.12 5.09 5.09 -8.46 -0.04 5.05 16 37 H 0.05 2.70 5.61 -2.39 -0.01 2.69 16 38 H 0.27 15.69 7.70 -92.71 -0.71 14.98 16 39 H 0.12 4.96 6.86 -2.91 -0.02 4.94 16 40 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.08 2.08 6.92 -2.39 -0.02 2.06 16 42 H 0.06 1.00 8.14 -2.38 -0.02 0.99 16 43 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 44 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.05 0.96 6.12 -2.38 -0.01 0.95 16 48 H 0.11 1.34 7.26 -2.39 -0.02 1.32 16 49 H 0.07 0.94 7.57 -2.39 -0.02 0.92 16 50 H 0.18 2.30 5.96 -2.91 -0.02 2.28 16 51 H 0.20 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -78.20 394.49 3.58 -74.61 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 0.95 Total: 27.63 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 7.14 Total: 1.57 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -4.98 Total: -105.28 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -1.60 Total: -49.07 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.06 Total: 50.53 kcal Total: -78.20 3.58 -74.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188711229.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.581 kcal (2) G-P(sol) polarization free energy of solvation -78.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds