Wall clock time and date at job start Wed Apr 1 2020 05:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46991 * 2 1 4 4 N 1.46496 * 109.47250 * 179.97438 * 3 2 1 5 5 C 1.34776 * 120.00366 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99768 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00270 * 180.02562 * 5 4 3 8 8 C 1.52995 * 109.47369 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47206 * 180.02562 * 8 7 5 10 10 C 1.50706 * 109.46907 * 179.97438 * 9 8 7 11 11 O 1.21276 * 120.00037 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99480 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00318 * 359.97438 * 12 10 9 14 14 C 1.50701 * 109.46866 * 252.76088 * 13 12 10 15 15 H 1.08010 * 119.99370 * 234.30604 * 14 13 12 16 16 C 1.37868 * 120.00203 * 54.30456 * 14 13 12 17 17 N 1.31513 * 120.00021 * 4.82716 * 16 14 13 18 18 Si 1.86810 * 119.99985 * 184.82312 * 16 14 13 19 19 H 1.48505 * 109.46897 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46751 * 120.00078 * 18 16 14 21 21 H 1.48497 * 109.47219 * 240.00146 * 18 16 14 22 22 C 1.46500 * 119.99552 * 179.97438 * 12 10 9 23 23 C 1.50701 * 109.47531 * 274.72567 * 22 12 10 24 24 C 1.38678 * 120.41674 * 274.87099 * 23 22 12 25 25 C 1.38627 * 118.42143 * 179.77855 * 24 23 22 26 26 C 1.38227 * 119.15852 * 0.51165 * 25 24 23 27 27 N 1.31854 * 120.76677 * 359.72284 * 26 25 24 28 28 C 1.31888 * 121.71987 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.47924 * 300.00082 * 1 2 3 30 30 H 1.09002 * 109.46822 * 60.00228 * 1 2 3 31 31 H 1.08999 * 109.47166 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47214 * 239.99694 * 2 1 3 33 33 H 1.09002 * 109.46822 * 119.99772 * 2 1 3 34 34 H 1.09005 * 109.47262 * 59.99888 * 3 2 1 35 35 H 1.08996 * 109.47304 * 300.00003 * 3 2 1 36 36 H 0.97005 * 119.99968 * 359.97438 * 4 3 2 37 37 H 1.08997 * 109.47457 * 59.99485 * 7 5 4 38 38 H 1.09002 * 109.46880 * 299.99911 * 7 5 4 39 39 H 1.08995 * 109.47702 * 59.99652 * 8 7 5 40 40 H 1.09002 * 109.46626 * 299.99550 * 8 7 5 41 41 H 1.08993 * 109.47460 * 59.99654 * 9 8 7 42 42 H 1.09002 * 109.46822 * 299.99260 * 9 8 7 43 43 H 1.08999 * 109.46879 * 132.76224 * 13 12 10 44 44 H 1.08994 * 109.46978 * 12.76162 * 13 12 10 45 45 H 0.97006 * 119.99561 * 175.00081 * 17 16 14 46 46 H 1.09006 * 109.47416 * 34.72471 * 22 12 10 47 47 H 1.09006 * 109.47417 * 154.72600 * 22 12 10 48 48 H 1.08007 * 120.79090 * 0.02562 * 24 23 22 49 49 H 1.07998 * 120.41906 * 180.20934 * 25 24 23 50 50 H 1.08002 * 119.61845 * 179.75254 * 26 25 24 51 51 H 1.08006 * 119.61190 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1788 2.6097 0.0002 6 8 3.5724 3.6600 -0.0002 7 6 5.6858 2.6097 0.0003 8 6 6.1958 4.0522 0.0004 9 6 7.7259 4.0522 -0.0002 10 6 8.2282 5.4731 -0.0007 11 8 7.4400 6.3948 -0.0011 12 7 9.5532 5.7193 -0.0008 13 6 10.5052 4.6058 0.0002 14 6 11.1515 4.4987 1.3574 15 1 12.2280 4.5054 1.4449 16 6 10.3687 4.3923 2.4873 17 7 9.0625 4.2886 2.3749 18 14 11.1634 4.3954 4.1779 19 1 12.6358 4.5229 4.0325 20 1 10.6433 5.5407 4.9672 21 1 10.8428 3.1256 4.8779 22 6 10.0415 7.1005 -0.0018 23 6 10.0988 7.6121 -1.4182 24 6 11.2106 7.3651 -2.2095 25 6 11.2175 7.8510 -3.5078 26 6 10.1282 8.5696 -3.9638 27 7 9.0898 8.7894 -3.1815 28 6 9.0468 8.3381 -1.9430 29 1 -0.3635 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.9900 0.6024 0.0013 37 1 6.0492 2.0955 -0.8894 38 1 6.0491 2.0963 0.8905 39 1 5.8325 4.5660 0.8903 40 1 5.8325 4.5660 -0.8897 41 1 8.0889 3.5385 -0.8903 42 1 8.0895 3.5382 0.8896 43 1 11.2717 4.7825 -0.7543 44 1 9.9795 3.6782 -0.2261 45 1 8.5180 4.1410 3.1641 46 1 9.3662 7.7251 0.5830 47 1 11.0388 7.1337 0.4370 48 1 12.0495 6.8041 -1.8247 49 1 12.0652 7.6746 -4.1532 50 1 10.1275 8.9550 -4.9727 51 1 8.1788 8.5378 -1.3320 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264166848.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:07 Heat of formation + Delta-G solvation = -58.065556 kcal Electronic energy + Delta-G solvation = -30505.678468 eV Core-core repulsion = 26404.313777 eV Total energy + Delta-G solvation = -4101.364691 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.86804 -39.56200 -38.42166 -35.92432 -34.99375 -33.68292 -32.89122 -32.58219 -31.80330 -31.08032 -28.45676 -27.58421 -26.35719 -25.18580 -23.25965 -22.72876 -22.33419 -21.81039 -21.05182 -19.89255 -18.06753 -16.93330 -16.76549 -16.31402 -16.15417 -16.02261 -15.95120 -15.38433 -15.26983 -15.02302 -14.76642 -14.57305 -14.02996 -13.75370 -13.44185 -13.27916 -13.06639 -12.78233 -12.71719 -12.54908 -12.43150 -12.30847 -12.15205 -11.87341 -11.49164 -11.41147 -11.34027 -11.18242 -11.12650 -11.05284 -10.87212 -10.81662 -10.38512 -10.12133 -9.86175 -9.68862 -9.60572 -9.46848 -9.10734 -9.05041 -8.83216 -8.69604 -8.29782 -7.30118 -6.20044 -4.41853 1.46368 1.63838 2.86754 3.14461 3.24683 3.26367 3.27178 4.06109 4.09356 4.22447 4.55300 4.57677 4.68018 4.81178 4.90617 5.05121 5.10641 5.13465 5.33866 5.33967 5.35141 5.37924 5.44812 5.49599 5.51879 5.54697 5.71623 5.79319 5.84286 5.89064 5.96299 6.06080 6.20954 6.23489 6.31994 6.39968 6.44212 6.47540 6.53930 6.66032 6.70240 6.79783 7.07068 7.10060 7.11679 7.37036 7.55883 7.66426 7.84897 8.01401 8.33195 8.40266 8.62949 8.88335 9.31461 9.62658 10.74066 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008300 B = 0.002877 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3372.815778 B = 9728.911016 C =12448.600540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.741 5.741 5 C 0.511 3.489 6 O -0.535 6.535 7 C -0.137 4.137 8 C -0.079 4.079 9 C -0.149 4.149 10 C 0.551 3.449 11 O -0.589 6.589 12 N -0.580 5.580 13 C 0.229 3.771 14 C -0.542 4.542 15 H 0.061 0.939 16 C 0.079 3.921 17 N -0.872 5.872 18 Si 0.895 3.105 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.167 3.833 23 C -0.138 4.138 24 C -0.065 4.065 25 C -0.182 4.182 26 C 0.083 3.917 27 N -0.492 5.492 28 C 0.119 3.881 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.399 0.601 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.155 0.845 43 H 0.019 0.981 44 H 0.044 0.956 45 H 0.267 0.733 46 H 0.075 0.925 47 H 0.084 0.916 48 H 0.133 0.867 49 H 0.128 0.872 50 H 0.147 0.853 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.671 -7.596 -6.673 11.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C -0.007 4.007 4 N -0.395 5.395 5 C 0.298 3.702 6 O -0.411 6.411 7 C -0.177 4.177 8 C -0.118 4.118 9 C -0.188 4.188 10 C 0.342 3.658 11 O -0.472 6.472 12 N -0.310 5.310 13 C 0.109 3.891 14 C -0.580 4.580 15 H 0.079 0.921 16 C -0.125 4.125 17 N -0.509 5.509 18 Si 0.723 3.277 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 C 0.042 3.958 23 C -0.141 4.141 24 C -0.092 4.092 25 C -0.202 4.202 26 C -0.074 4.074 27 N -0.200 5.200 28 C -0.038 4.038 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.233 0.767 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.171 0.829 43 H 0.037 0.963 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.102 0.898 48 H 0.150 0.850 49 H 0.146 0.854 50 H 0.165 0.835 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.370 -5.844 -6.876 11.046 hybrid contribution 1.431 -1.102 1.326 2.241 sum -4.939 -6.946 -5.549 10.170 Atomic orbital electron populations 1.21681 0.94707 1.02007 1.02361 1.21734 0.96880 0.96071 1.02663 1.21348 0.80277 0.96778 1.02294 1.46115 1.07016 1.09016 1.77304 1.21055 0.90890 0.83157 0.75050 1.90712 1.70641 1.31330 1.48377 1.21717 0.90318 1.01601 1.04068 1.20993 0.94985 0.92372 1.03439 1.22188 0.94498 0.96092 1.06045 1.20197 0.81604 0.90899 0.73149 1.90521 1.55848 1.47199 1.53611 1.48257 1.06210 1.05138 1.71398 1.19343 0.88302 0.85973 0.95477 1.21565 0.93388 1.51341 0.91696 0.92088 1.24991 0.94703 0.93443 0.99397 1.69541 1.04040 1.47635 1.29732 0.86493 0.79520 0.77812 0.83866 1.19810 1.20876 1.20853 1.19879 1.01050 0.85238 0.89635 1.21642 0.94734 0.98104 0.99617 1.21555 0.97917 0.96376 0.93352 1.22049 1.00289 1.00985 0.96854 1.22652 0.89588 0.96027 0.99172 1.67710 1.26334 1.20523 1.05473 1.22888 0.97420 0.92453 0.91077 0.92343 0.92379 0.92285 0.91366 0.91316 0.91717 0.91752 0.76708 0.89416 0.88692 0.91063 0.92367 0.92438 0.82866 0.96273 0.93753 0.92288 0.90651 0.89753 0.84956 0.85413 0.83547 0.82374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.14 -0.95 6.05 -26.73 -0.16 -1.11 16 3 C 0.12 1.20 5.67 -4.05 -0.02 1.18 16 4 N -0.74 -8.28 5.56 -60.30 -0.33 -8.61 16 5 C 0.51 7.86 7.83 -10.99 -0.09 7.78 16 6 O -0.53 -10.70 15.98 5.56 0.09 -10.61 16 7 C -0.14 -1.99 5.70 -27.89 -0.16 -2.15 16 8 C -0.08 -1.54 3.79 -26.73 -0.10 -1.64 16 9 C -0.15 -3.03 3.80 -27.88 -0.11 -3.14 16 10 C 0.55 12.80 6.34 -10.98 -0.07 12.73 16 11 O -0.59 -15.10 15.09 5.56 0.08 -15.02 16 12 N -0.58 -12.71 2.11 -176.43 -0.37 -13.08 16 13 C 0.23 4.94 5.65 -5.19 -0.03 4.91 16 14 C -0.54 -12.74 9.11 -34.44 -0.31 -13.05 16 15 H 0.06 1.43 7.82 -52.48 -0.41 1.02 16 16 C 0.08 1.89 5.33 -17.82 -0.10 1.79 16 17 N -0.87 -21.29 8.27 55.43 0.46 -20.83 16 18 Si 0.90 19.29 29.54 -169.99 -5.02 14.27 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 C 0.17 3.34 5.43 -5.19 -0.03 3.32 16 23 C -0.14 -2.49 5.44 -104.48 -0.57 -3.06 16 24 C -0.07 -1.02 9.88 -39.28 -0.39 -1.41 16 25 C -0.18 -2.49 10.11 -39.44 -0.40 -2.89 16 26 C 0.08 1.22 11.18 -17.55 -0.20 1.02 16 27 N -0.49 -8.80 10.36 -13.25 -0.14 -8.94 16 28 C 0.12 2.23 10.67 -17.55 -0.19 2.05 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.40 3.21 8.47 -40.82 -0.35 2.87 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.58 8.06 -51.93 -0.42 1.16 16 40 H 0.06 1.21 8.06 -51.93 -0.42 0.80 16 41 H 0.06 1.07 7.55 -51.93 -0.39 0.67 16 42 H 0.15 3.35 4.96 -51.93 -0.26 3.09 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.04 0.96 5.92 -51.93 -0.31 0.65 16 45 H 0.27 6.43 8.32 -40.82 -0.34 6.09 16 46 H 0.08 1.61 7.49 -51.93 -0.39 1.22 16 47 H 0.08 1.63 7.79 -51.93 -0.40 1.22 16 48 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 49 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 50 H 0.15 1.67 8.06 -52.49 -0.42 1.24 16 51 H 0.16 3.14 7.68 -52.48 -0.40 2.74 16 LS Contribution 417.85 15.07 6.30 6.30 Total: -1.00 -30.94 417.85 -9.86 -40.81 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -8.38 Total: 9.97 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -2.54 Total: 5.75 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.39 Total: -51.46 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: 0.17 Total: -25.63 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -30.94 -9.86 -40.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264166848.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.260 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds