Wall clock time and date at job start Wed Apr 1 2020 05:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46991 * 2 1 4 4 N 1.46496 * 109.47250 * 179.97438 * 3 2 1 5 5 C 1.34776 * 120.00366 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99768 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00270 * 180.02562 * 5 4 3 8 8 C 1.52995 * 109.47369 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47206 * 180.02562 * 8 7 5 10 10 C 1.50706 * 109.46907 * 179.97438 * 9 8 7 11 11 O 1.21276 * 120.00037 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99480 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00318 * 359.97438 * 12 10 9 14 14 C 1.50701 * 109.46866 * 252.76088 * 13 12 10 15 15 H 1.08010 * 119.99370 * 234.30604 * 14 13 12 16 16 C 1.37868 * 120.00203 * 54.30456 * 14 13 12 17 17 N 1.31513 * 120.00021 * 4.82716 * 16 14 13 18 18 Si 1.86810 * 119.99985 * 184.82312 * 16 14 13 19 19 H 1.48505 * 109.46897 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46751 * 120.00078 * 18 16 14 21 21 H 1.48497 * 109.47219 * 240.00146 * 18 16 14 22 22 C 1.46500 * 119.99552 * 179.97438 * 12 10 9 23 23 C 1.50701 * 109.47531 * 274.72567 * 22 12 10 24 24 C 1.38678 * 120.41674 * 274.87099 * 23 22 12 25 25 C 1.38627 * 118.42143 * 179.77855 * 24 23 22 26 26 C 1.38227 * 119.15852 * 0.51165 * 25 24 23 27 27 N 1.31854 * 120.76677 * 359.72284 * 26 25 24 28 28 C 1.31888 * 121.71987 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.47924 * 300.00082 * 1 2 3 30 30 H 1.09002 * 109.46822 * 60.00228 * 1 2 3 31 31 H 1.08999 * 109.47166 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47214 * 239.99694 * 2 1 3 33 33 H 1.09002 * 109.46822 * 119.99772 * 2 1 3 34 34 H 1.09005 * 109.47262 * 59.99888 * 3 2 1 35 35 H 1.08996 * 109.47304 * 300.00003 * 3 2 1 36 36 H 0.97005 * 119.99968 * 359.97438 * 4 3 2 37 37 H 1.08997 * 109.47457 * 59.99485 * 7 5 4 38 38 H 1.09002 * 109.46880 * 299.99911 * 7 5 4 39 39 H 1.08995 * 109.47702 * 59.99652 * 8 7 5 40 40 H 1.09002 * 109.46626 * 299.99550 * 8 7 5 41 41 H 1.08993 * 109.47460 * 59.99654 * 9 8 7 42 42 H 1.09002 * 109.46822 * 299.99260 * 9 8 7 43 43 H 1.08999 * 109.46879 * 132.76224 * 13 12 10 44 44 H 1.08994 * 109.46978 * 12.76162 * 13 12 10 45 45 H 0.97006 * 119.99561 * 175.00081 * 17 16 14 46 46 H 1.09006 * 109.47416 * 34.72471 * 22 12 10 47 47 H 1.09006 * 109.47417 * 154.72600 * 22 12 10 48 48 H 1.08007 * 120.79090 * 0.02562 * 24 23 22 49 49 H 1.07998 * 120.41906 * 180.20934 * 25 24 23 50 50 H 1.08002 * 119.61845 * 179.75254 * 26 25 24 51 51 H 1.08006 * 119.61190 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1788 2.6097 0.0002 6 8 3.5724 3.6600 -0.0002 7 6 5.6858 2.6097 0.0003 8 6 6.1958 4.0522 0.0004 9 6 7.7259 4.0522 -0.0002 10 6 8.2282 5.4731 -0.0007 11 8 7.4400 6.3948 -0.0011 12 7 9.5532 5.7193 -0.0008 13 6 10.5052 4.6058 0.0002 14 6 11.1515 4.4987 1.3574 15 1 12.2280 4.5054 1.4449 16 6 10.3687 4.3923 2.4873 17 7 9.0625 4.2886 2.3749 18 14 11.1634 4.3954 4.1779 19 1 12.6358 4.5229 4.0325 20 1 10.6433 5.5407 4.9672 21 1 10.8428 3.1256 4.8779 22 6 10.0415 7.1005 -0.0018 23 6 10.0988 7.6121 -1.4182 24 6 11.2106 7.3651 -2.2095 25 6 11.2175 7.8510 -3.5078 26 6 10.1282 8.5696 -3.9638 27 7 9.0898 8.7894 -3.1815 28 6 9.0468 8.3381 -1.9430 29 1 -0.3635 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.9900 0.6024 0.0013 37 1 6.0492 2.0955 -0.8894 38 1 6.0491 2.0963 0.8905 39 1 5.8325 4.5660 0.8903 40 1 5.8325 4.5660 -0.8897 41 1 8.0889 3.5385 -0.8903 42 1 8.0895 3.5382 0.8896 43 1 11.2717 4.7825 -0.7543 44 1 9.9795 3.6782 -0.2261 45 1 8.5180 4.1410 3.1641 46 1 9.3662 7.7251 0.5830 47 1 11.0388 7.1337 0.4370 48 1 12.0495 6.8041 -1.8247 49 1 12.0652 7.6746 -4.1532 50 1 10.1275 8.9550 -4.9727 51 1 8.1788 8.5378 -1.3320 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264166848.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:06 Heat of formation + Delta-G solvation = -76.404799 kcal Electronic energy + Delta-G solvation = -30506.473718 eV Core-core repulsion = 26404.313777 eV Total energy + Delta-G solvation = -4102.159941 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.24678 -40.79572 -40.09002 -36.89697 -36.71004 -35.25499 -34.43984 -33.50830 -33.24357 -32.48235 -29.82375 -29.31254 -27.53990 -26.41729 -24.78672 -24.27903 -23.62962 -22.61729 -22.41974 -21.10877 -19.79421 -18.53415 -18.03566 -17.72846 -17.59982 -17.16526 -17.07480 -16.90254 -16.72394 -16.35878 -16.22445 -16.07729 -15.41253 -14.98562 -14.73186 -14.58788 -14.28305 -14.06968 -13.93586 -13.89599 -13.81648 -13.58326 -13.40451 -13.11027 -12.93469 -12.85629 -12.77246 -12.60751 -12.45679 -12.37729 -12.04184 -12.02419 -11.80060 -11.75970 -11.64801 -11.40111 -10.91044 -10.77383 -10.58940 -10.42875 -10.30760 -10.10735 -9.84606 -9.05814 -8.02989 -6.29067 0.19196 0.38319 1.41700 1.50037 1.55808 1.64976 2.20127 2.28816 2.43410 2.64201 3.02301 3.31409 3.57729 3.83997 3.92786 3.94516 3.98824 4.05945 4.07500 4.14859 4.17585 4.20228 4.34976 4.45562 4.55364 4.64370 4.70639 4.74328 4.77611 4.81424 4.84194 4.88317 4.91981 4.94349 4.96912 5.11873 5.13611 5.22859 5.23657 5.33485 5.36360 5.43807 5.45961 5.53438 5.59332 5.83960 5.89870 6.09215 6.22891 6.57449 6.78652 7.05427 7.12456 7.29077 7.45713 7.83550 8.87939 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008300 B = 0.002877 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3372.815778 B = 9728.911016 C =12448.600540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.113 3.887 4 N -0.719 5.719 5 C 0.508 3.492 6 O -0.592 6.592 7 C -0.126 4.126 8 C -0.068 4.068 9 C -0.139 4.139 10 C 0.536 3.464 11 O -0.625 6.625 12 N -0.579 5.579 13 C 0.229 3.771 14 C -0.548 4.548 15 H 0.062 0.938 16 C 0.042 3.958 17 N -0.886 5.886 18 Si 0.945 3.055 19 H -0.268 1.268 20 H -0.299 1.299 21 H -0.279 1.279 22 C 0.170 3.830 23 C -0.150 4.150 24 C -0.066 4.066 25 C -0.163 4.163 26 C 0.082 3.918 27 N -0.516 5.516 28 C 0.098 3.902 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.418 0.582 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.030 0.970 40 H 0.034 0.966 41 H 0.081 0.919 42 H 0.147 0.853 43 H 0.041 0.959 44 H 0.045 0.955 45 H 0.262 0.738 46 H 0.047 0.953 47 H 0.091 0.909 48 H 0.151 0.849 49 H 0.174 0.826 50 H 0.185 0.815 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 -9.989 -8.473 13.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.010 4.010 4 N -0.373 5.373 5 C 0.296 3.704 6 O -0.472 6.472 7 C -0.166 4.166 8 C -0.106 4.106 9 C -0.178 4.178 10 C 0.327 3.673 11 O -0.510 6.510 12 N -0.308 5.308 13 C 0.109 3.891 14 C -0.587 4.587 15 H 0.080 0.920 16 C -0.161 4.161 17 N -0.524 5.524 18 Si 0.773 3.227 19 H -0.192 1.192 20 H -0.226 1.226 21 H -0.204 1.204 22 C 0.046 3.954 23 C -0.153 4.153 24 C -0.092 4.092 25 C -0.182 4.182 26 C -0.075 4.075 27 N -0.225 5.225 28 C -0.059 4.059 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.256 0.744 37 H 0.141 0.859 38 H 0.132 0.868 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.099 0.901 42 H 0.164 0.836 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.109 0.891 48 H 0.169 0.831 49 H 0.192 0.808 50 H 0.202 0.798 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.319 -8.308 -8.672 12.762 hybrid contribution 0.851 -0.311 1.806 2.020 sum -3.468 -8.619 -6.866 11.553 Atomic orbital electron populations 1.21702 0.94202 1.02893 1.02074 1.21684 0.97195 0.93507 1.03855 1.21462 0.79492 0.99074 1.01021 1.45943 1.07574 1.08630 1.75115 1.21212 0.91289 0.83401 0.74506 1.90697 1.71623 1.33550 1.51360 1.21626 0.89814 0.98526 1.06634 1.20778 0.94412 0.95158 1.00295 1.22102 0.94818 0.94361 1.06543 1.20794 0.81906 0.91771 0.72812 1.90504 1.56782 1.48476 1.55275 1.48301 1.05930 1.05995 1.70550 1.19378 0.88528 0.85831 0.95322 1.21785 0.93477 1.50854 0.92540 0.91978 1.25524 0.95108 0.93664 1.01756 1.69670 1.04633 1.48275 1.29831 0.85713 0.78960 0.77076 0.80945 1.19214 1.22614 1.20430 1.19819 1.00271 0.84163 0.91174 1.21359 0.96000 0.99266 0.98716 1.21801 0.97186 0.96242 0.93971 1.22494 1.00956 0.98560 0.96193 1.23374 0.88784 0.95220 1.00166 1.67677 1.28278 1.21338 1.05214 1.22523 0.97230 0.94279 0.91833 0.92801 0.92630 0.90751 0.89964 0.90225 0.93277 0.92943 0.74427 0.85904 0.86784 0.95063 0.94753 0.90120 0.83604 0.94114 0.93714 0.92827 0.93484 0.89117 0.83136 0.80849 0.79772 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.97 16 2 C -0.12 -1.50 6.05 30.59 0.19 -1.31 16 3 C 0.11 2.28 5.67 86.38 0.49 2.77 16 4 N -0.72 -15.21 5.56 -463.08 -2.57 -17.78 16 5 C 0.51 15.69 7.83 87.66 0.69 16.37 16 6 O -0.59 -24.91 15.98 -3.03 -0.05 -24.96 16 7 C -0.13 -3.57 5.70 29.85 0.17 -3.40 16 8 C -0.07 -2.72 3.79 30.59 0.12 -2.61 16 9 C -0.14 -5.74 3.80 29.85 0.11 -5.62 16 10 C 0.54 25.82 6.34 87.66 0.56 26.38 16 11 O -0.63 -34.26 15.09 -3.02 -0.05 -34.30 16 12 N -0.58 -25.72 2.11 -830.50 -1.75 -27.47 16 13 C 0.23 9.63 5.65 85.63 0.48 10.11 16 14 C -0.55 -25.21 9.11 25.60 0.23 -24.97 16 15 H 0.06 2.81 7.82 -2.91 -0.02 2.78 16 16 C 0.04 1.98 5.33 84.65 0.45 2.43 16 17 N -0.89 -43.75 8.27 21.44 0.18 -43.57 16 18 Si 0.95 39.47 29.54 68.60 2.03 41.50 16 19 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 20 H -0.30 -13.21 7.11 99.48 0.71 -12.51 16 21 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 22 C 0.17 7.04 5.43 85.63 0.46 7.51 16 23 C -0.15 -5.47 5.44 -19.77 -0.11 -5.58 16 24 C -0.07 -1.88 9.88 22.47 0.22 -1.66 16 25 C -0.16 -3.80 10.11 22.36 0.23 -3.57 16 26 C 0.08 2.17 11.18 84.69 0.95 3.12 16 27 N -0.52 -18.36 10.36 -195.84 -2.03 -20.39 16 28 C 0.10 3.83 10.67 84.67 0.90 4.73 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.42 5.62 8.47 -92.70 -0.79 4.83 16 37 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 39 H 0.03 1.47 8.06 -2.39 -0.02 1.45 16 40 H 0.03 1.51 8.06 -2.39 -0.02 1.49 16 41 H 0.08 2.91 7.55 -2.39 -0.02 2.89 16 42 H 0.15 6.39 4.96 -2.39 -0.01 6.38 16 43 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.04 1.88 5.92 -2.39 -0.01 1.86 16 45 H 0.26 12.87 8.32 -92.70 -0.77 12.10 16 46 H 0.05 2.17 7.49 -2.38 -0.02 2.15 16 47 H 0.09 3.54 7.79 -2.38 -0.02 3.52 16 48 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 49 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 50 H 0.19 3.39 8.06 -2.91 -0.02 3.37 16 51 H 0.13 5.67 7.68 -2.91 -0.02 5.64 16 Total: -1.00 -71.94 417.85 2.75 -69.19 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: 0.14 Total: 34.06 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: 6.85 Total: 23.73 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -6.18 Total: -109.21 kcal Atomic # 8 Polarization: -59.17 SS G_CDS: -0.09 Total: -59.27 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -71.94 2.75 -69.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264166848.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.216 kcal (2) G-P(sol) polarization free energy of solvation -71.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds