Wall clock time and date at job start Wed Apr 1 2020 04:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47273 * 2 1 4 4 N 1.46491 * 109.47372 * 179.97438 * 3 2 1 5 5 C 1.46508 * 120.00080 * 275.00514 * 4 3 2 6 6 C 1.52998 * 109.46911 * 274.99709 * 5 4 3 7 7 N 1.46894 * 109.47119 * 179.97438 * 6 5 4 8 8 C 1.48542 * 111.00099 * 52.60261 * 7 6 5 9 9 C 1.54937 * 103.22545 * 159.72036 * 8 7 6 10 10 C 1.54595 * 102.92496 * 322.58848 * 9 8 7 11 11 C 1.47904 * 111.00349 * 169.99988 * 7 6 5 12 12 S 1.65606 * 120.00006 * 95.00065 * 4 3 2 13 13 O 1.42092 * 106.39918 * 336.46173 * 12 4 3 14 14 O 1.42101 * 106.40121 * 203.54281 * 12 4 3 15 15 N 1.65598 * 107.21461 * 90.00398 * 12 4 3 16 16 C 1.46505 * 120.00010 * 269.99864 * 15 12 4 17 17 C 1.46498 * 120.00175 * 90.00139 * 15 12 4 18 18 H 1.08994 * 109.47267 * 359.97438 * 17 15 12 19 19 C 1.53001 * 109.47159 * 119.99612 * 17 15 12 20 20 C 1.50700 * 109.47011 * 239.99757 * 17 15 12 21 21 H 1.07994 * 120.00255 * 354.64052 * 20 17 15 22 22 C 1.37879 * 119.99669 * 174.64398 * 20 17 15 23 23 N 1.31512 * 120.00105 * 353.03611 * 22 20 17 24 24 Si 1.86804 * 119.99796 * 173.31250 * 22 20 17 25 25 H 1.48505 * 109.47191 * 179.72411 * 24 22 20 26 26 H 1.48498 * 109.47056 * 299.72139 * 24 22 20 27 27 H 1.48500 * 109.47307 * 59.72267 * 24 22 20 28 28 H 1.09005 * 109.47289 * 59.99499 * 1 2 3 29 29 H 1.09002 * 109.47295 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47163 * 299.99989 * 1 2 3 31 31 H 1.09007 * 109.46978 * 240.00396 * 2 1 3 32 32 H 1.08993 * 109.46881 * 120.00525 * 2 1 3 33 33 H 1.09007 * 109.46795 * 60.00284 * 3 2 1 34 34 H 1.08996 * 109.47229 * 300.00468 * 3 2 1 35 35 H 1.09003 * 109.47021 * 34.99490 * 5 4 3 36 36 H 1.09000 * 109.46919 * 154.99709 * 5 4 3 37 37 H 1.08997 * 109.47014 * 300.00158 * 6 5 4 38 38 H 1.09000 * 109.47330 * 60.00251 * 6 5 4 39 39 H 1.08991 * 110.66497 * 278.15865 * 8 7 6 40 40 H 1.09007 * 110.66267 * 41.28821 * 8 7 6 41 41 H 1.08998 * 110.72184 * 204.22562 * 9 8 7 42 42 H 1.09004 * 110.72118 * 80.94687 * 9 8 7 43 43 H 1.09005 * 110.30868 * 263.04111 * 10 9 8 44 44 H 1.09001 * 110.31136 * 140.87578 * 10 9 8 45 45 H 1.09001 * 109.91545 * 333.51335 * 11 7 6 46 46 H 1.09001 * 109.91267 * 94.60481 * 11 7 6 47 47 H 1.08994 * 109.46805 * 270.00372 * 16 15 12 48 48 H 1.08997 * 109.46855 * 29.99965 * 16 15 12 49 49 H 1.08994 * 109.46987 * 150.00068 * 16 15 12 50 50 H 1.08996 * 109.47183 * 177.07049 * 19 17 15 51 51 H 1.08996 * 109.47187 * 297.07138 * 19 17 15 52 52 H 1.09004 * 109.47138 * 57.07531 * 19 17 15 53 53 H 0.96998 * 120.00555 * 354.98355 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.2370 1.3320 1.2649 6 6 4.3828 2.7196 1.8926 7 7 5.1163 2.6088 3.1606 8 6 6.3965 1.8792 2.9730 9 6 7.2333 2.3094 4.2040 10 6 6.8463 3.7954 4.3829 11 6 5.4854 3.9443 3.6779 12 16 4.3336 1.5673 -1.4278 13 8 3.4523 1.1096 -2.4441 14 8 5.6164 1.0008 -1.1983 15 7 4.5788 3.1800 -1.7128 16 6 3.5888 3.9487 -2.4713 17 6 5.7857 3.8382 -1.2065 18 1 6.3980 3.1124 -0.6713 19 6 6.5833 4.4128 -2.3790 20 6 5.3950 4.9527 -0.2704 21 1 4.3539 5.2075 -0.1391 22 6 6.3670 5.6470 0.4183 23 7 7.6199 5.2510 0.3658 24 14 5.9028 7.1458 1.4321 25 1 7.1192 7.7047 2.0750 26 1 5.2942 8.1721 0.5482 27 1 4.9261 6.7521 2.4791 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 1.9563 -0.8899 35 1 3.6893 0.6808 1.9461 36 1 5.2253 0.9125 1.0770 37 1 4.9304 3.3708 1.2114 38 1 3.3945 3.1392 2.0806 39 1 6.2297 0.8021 2.9785 40 1 6.8842 2.1894 2.0488 41 1 8.2993 2.2103 3.9994 42 1 6.9526 1.7292 5.0830 43 1 7.5890 4.4391 3.9115 44 1 6.7525 4.0371 5.4416 45 1 5.5699 4.6518 2.8530 46 1 4.7324 4.2890 4.3867 47 1 3.8344 3.9102 -3.5325 48 1 2.5983 3.5226 -2.3120 49 1 3.5971 4.9850 -2.1337 50 1 7.4539 4.9472 -1.9989 51 1 6.9103 3.6010 -3.0286 52 1 5.9537 5.0998 -2.9446 53 1 7.8502 4.4301 -0.0967 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352649526.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:09 Heat of formation + Delta-G solvation = -97.617299 kcal Electronic energy + Delta-G solvation = -32853.499795 eV Core-core repulsion = 28885.863963 eV Total energy + Delta-G solvation = -3967.635832 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.95519 -38.56153 -38.15824 -37.99512 -37.00666 -34.69074 -34.47545 -32.65617 -30.83439 -29.88588 -28.69920 -27.31285 -26.85544 -26.32538 -23.98711 -22.74295 -22.43276 -21.69837 -21.50680 -19.89038 -18.98224 -18.75655 -18.51374 -17.58562 -16.91273 -16.69137 -16.08415 -15.80156 -15.64291 -15.39645 -15.31734 -15.17344 -14.91020 -14.66028 -14.57958 -14.02244 -13.74596 -13.64207 -13.55833 -13.52968 -13.39358 -13.32059 -13.04344 -12.99750 -12.93680 -12.76387 -12.56827 -12.51281 -12.42310 -12.26207 -12.19857 -12.10524 -12.07074 -12.00714 -11.93026 -11.69715 -11.51635 -11.33581 -10.92931 -10.44173 -10.05910 -9.65703 -9.30906 -8.47937 -6.20610 -0.44277 1.53888 1.57095 1.75090 1.83703 2.42891 2.56741 3.11260 3.24879 3.29258 3.70225 3.78458 3.83902 3.99344 4.06527 4.10111 4.16664 4.31847 4.36009 4.41438 4.46382 4.49113 4.59442 4.63816 4.68393 4.70420 4.72000 4.77704 4.80160 4.84490 4.92005 4.96876 4.98896 5.01309 5.07406 5.09413 5.13103 5.18043 5.21099 5.28712 5.31351 5.35686 5.41047 5.42287 5.52903 5.58078 5.81463 5.96574 6.09040 6.14511 6.36434 6.64177 7.51497 8.84869 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009775 B = 0.005957 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.749637 B = 4699.381680 C = 6084.039773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.144 4.144 3 C 0.121 3.879 4 N -0.996 5.996 5 C 0.130 3.870 6 C 0.001 3.999 7 N -0.503 5.503 8 C 0.028 3.972 9 C -0.112 4.112 10 C -0.128 4.128 11 C 0.027 3.973 12 S 2.786 3.214 13 O -1.000 7.000 14 O -1.017 7.017 15 N -0.994 5.994 16 C 0.101 3.899 17 C 0.267 3.733 18 H 0.015 0.985 19 C -0.144 4.144 20 C -0.586 4.586 21 H 0.059 0.941 22 C -0.001 4.001 23 N -0.922 5.922 24 Si 1.079 2.921 25 H -0.292 1.292 26 H -0.279 1.279 27 H -0.262 1.262 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.013 0.987 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.048 0.952 44 H 0.091 0.909 45 H 0.034 0.966 46 H 0.084 0.916 47 H 0.051 0.949 48 H 0.073 0.927 49 H 0.079 0.921 50 H 0.048 0.952 51 H 0.024 0.976 52 H 0.056 0.944 53 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.829 -5.331 5.313 13.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.183 4.183 3 C -0.004 4.004 4 N -0.835 5.835 5 C 0.004 3.996 6 C -0.129 4.129 7 N -0.228 5.228 8 C -0.100 4.100 9 C -0.150 4.150 10 C -0.166 4.166 11 C -0.101 4.101 12 S 2.797 3.203 13 O -0.984 6.984 14 O -1.001 7.001 15 N -0.835 5.835 16 C -0.044 4.044 17 C 0.162 3.838 18 H 0.032 0.968 19 C -0.204 4.204 20 C -0.625 4.625 21 H 0.078 0.922 22 C -0.202 4.202 23 N -0.559 5.559 24 Si 0.904 3.096 25 H -0.218 1.218 26 H -0.204 1.204 27 H -0.187 1.187 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.031 0.969 41 H 0.088 0.912 42 H 0.111 0.889 43 H 0.067 0.933 44 H 0.109 0.891 45 H 0.052 0.948 46 H 0.103 0.897 47 H 0.069 0.931 48 H 0.092 0.908 49 H 0.097 0.903 50 H 0.067 0.933 51 H 0.043 0.957 52 H 0.075 0.925 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.298 -5.115 6.018 12.978 hybrid contribution 0.339 -0.289 -1.789 1.844 sum -9.959 -5.404 4.229 12.094 Atomic orbital electron populations 1.21666 0.93256 1.02653 1.02597 1.21965 0.97799 0.96430 1.02106 1.21542 0.76790 0.98051 1.04008 1.57757 1.15799 1.88336 1.21656 1.21284 0.96493 0.97234 0.84612 1.23105 1.00071 0.98116 0.91562 1.64884 1.18204 1.14349 1.25342 1.23258 0.90161 0.99488 0.97050 1.22423 0.99158 0.95589 0.97843 1.22355 0.95691 0.97218 1.01333 1.22984 0.97377 0.90865 0.98913 1.01571 0.72168 0.73294 0.73315 1.93519 1.67227 1.80608 1.57015 1.93508 1.42549 1.77667 1.86402 1.57586 1.30419 1.28066 1.67450 1.21394 0.89879 0.98262 0.94904 1.18445 0.81342 0.92429 0.91621 0.96768 1.22042 1.00425 0.99466 0.98456 1.22105 0.95292 1.18735 1.26347 0.92233 1.26466 0.92968 1.03366 0.97445 1.70874 1.19261 1.23305 1.42419 0.83488 0.75837 0.74081 0.76200 1.21755 1.20446 1.18732 0.92495 0.91668 0.91223 0.93435 0.90896 0.88425 0.90461 0.87645 0.91599 0.91272 0.90535 0.89105 0.96888 0.91238 0.88862 0.93334 0.89054 0.94804 0.89738 0.93083 0.90807 0.90261 0.93316 0.95686 0.92529 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.91 71.98 0.71 -1.71 16 2 C -0.14 -3.21 6.26 30.59 0.19 -3.02 16 3 C 0.12 3.02 5.35 86.38 0.46 3.48 16 4 N -1.00 -31.98 2.84 -515.79 -1.47 -33.44 16 5 C 0.13 4.16 5.34 86.38 0.46 4.62 16 6 C 0.00 0.04 5.35 86.30 0.46 0.50 16 7 N -0.50 -16.78 5.40 -883.02 -4.76 -21.54 16 8 C 0.03 0.95 5.10 86.65 0.44 1.40 16 9 C -0.11 -3.18 7.06 31.80 0.22 -2.96 16 10 C -0.13 -3.92 6.93 31.47 0.22 -3.70 16 11 C 0.03 0.91 6.70 86.45 0.58 1.49 16 12 S 2.79 110.25 6.01 -56.49 -0.34 109.91 16 13 O -1.00 -40.12 16.18 -128.00 -2.07 -42.19 16 14 O -1.02 -47.51 15.26 -128.00 -1.95 -49.47 16 15 N -0.99 -39.90 3.12 -520.46 -1.62 -41.53 16 16 C 0.10 3.37 9.22 127.77 1.18 4.55 16 17 C 0.27 12.42 1.80 44.25 0.08 12.50 16 18 H 0.01 0.78 6.24 -2.39 -0.01 0.76 16 19 C -0.14 -6.57 8.94 71.98 0.64 -5.92 16 20 C -0.59 -27.79 5.43 25.60 0.14 -27.65 16 21 H 0.06 2.77 7.15 -2.91 -0.02 2.75 16 22 C 0.00 -0.04 4.81 84.66 0.41 0.37 16 23 N -0.92 -50.30 12.83 21.45 0.28 -50.02 16 24 Si 1.08 45.37 28.28 68.60 1.94 47.31 16 25 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 26 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.26 -10.07 6.83 99.48 0.68 -9.39 16 28 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 2.06 8.11 -2.38 -0.02 2.04 16 34 H 0.08 1.91 7.26 -2.39 -0.02 1.89 16 35 H 0.11 2.78 8.11 -2.39 -0.02 2.76 16 36 H 0.07 2.41 5.57 -2.39 -0.01 2.39 16 37 H 0.07 2.95 4.30 -2.39 -0.01 2.94 16 38 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.09 2.69 7.66 -2.39 -0.02 2.67 16 40 H 0.01 0.53 8.00 -2.38 -0.02 0.52 16 41 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 43 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.03 1.38 4.98 -2.39 -0.01 1.37 16 46 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 47 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.07 2.09 7.44 -2.39 -0.02 2.07 16 49 H 0.08 2.66 6.92 -2.39 -0.02 2.65 16 50 H 0.05 2.40 6.35 -2.39 -0.02 2.38 16 51 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.06 2.38 7.57 -2.38 -0.02 2.36 16 53 H 0.26 14.67 6.21 -92.71 -0.58 14.10 16 Total: -1.00 -61.30 406.86 -2.77 -64.07 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 1.03 Total: 32.95 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 6.20 Total: -16.05 kcal Atomic # 7 Polarization: -138.96 SS G_CDS: -7.58 Total: -146.53 kcal Atomic # 8 Polarization: -87.63 SS G_CDS: -4.02 Total: -91.66 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.94 Total: 47.31 kcal Atomic # 16 Polarization: 110.25 SS G_CDS: -0.34 Total: 109.91 kcal Total: -61.30 -2.77 -64.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352649526.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.546 kcal (2) G-P(sol) polarization free energy of solvation -61.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds