Wall clock time and date at job start Wed Apr 1 2020 04:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46908 * 2 1 4 4 N 1.46506 * 109.46691 * 180.02562 * 3 2 1 5 5 C 1.46498 * 120.00239 * 274.72301 * 4 3 2 6 6 C 1.53008 * 109.46912 * 85.00063 * 5 4 3 7 7 N 1.46896 * 109.46825 * 180.02562 * 6 5 4 8 8 C 1.48531 * 111.00177 * 52.60669 * 7 6 5 9 9 C 1.54940 * 103.22543 * 159.71687 * 8 7 6 10 10 C 1.54593 * 102.92244 * 322.58801 * 9 8 7 11 11 C 1.47907 * 110.99568 * 170.00291 * 7 6 5 12 12 S 1.65597 * 119.99791 * 95.00526 * 4 3 2 13 13 O 1.42101 * 106.40154 * 203.53789 * 12 4 3 14 14 O 1.42106 * 106.40098 * 336.45446 * 12 4 3 15 15 N 1.65596 * 107.22389 * 89.99756 * 12 4 3 16 16 C 1.46502 * 120.00149 * 89.99526 * 15 12 4 17 17 C 1.46498 * 120.00027 * 270.00475 * 15 12 4 18 18 H 1.09001 * 109.47201 * 359.97438 * 17 15 12 19 19 C 1.53003 * 109.47210 * 239.99627 * 17 15 12 20 20 C 1.50700 * 109.47612 * 119.99557 * 17 15 12 21 21 H 1.08000 * 119.99738 * 359.97438 * 20 17 15 22 22 C 1.37879 * 120.00155 * 180.02562 * 20 17 15 23 23 N 1.31515 * 119.99943 * 359.97438 * 22 20 17 24 24 Si 1.86797 * 119.99885 * 179.97438 * 22 20 17 25 25 H 1.48508 * 109.47132 * 59.99869 * 24 22 20 26 26 H 1.48501 * 109.47005 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47081 * 299.99802 * 24 22 20 28 28 H 1.09005 * 109.46989 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47016 * 299.99634 * 1 2 3 30 30 H 1.08998 * 109.47401 * 59.99711 * 1 2 3 31 31 H 1.09001 * 109.46425 * 239.99900 * 2 1 3 32 32 H 1.08995 * 109.46903 * 120.00289 * 2 1 3 33 33 H 1.08999 * 109.46983 * 60.00346 * 3 2 1 34 34 H 1.08998 * 109.47326 * 300.00336 * 3 2 1 35 35 H 1.08990 * 109.47572 * 205.00129 * 5 4 3 36 36 H 1.09003 * 109.47280 * 325.00485 * 5 4 3 37 37 H 1.08999 * 109.46839 * 300.00375 * 6 5 4 38 38 H 1.09003 * 109.46803 * 60.00131 * 6 5 4 39 39 H 1.09000 * 110.66798 * 278.15105 * 8 7 6 40 40 H 1.09001 * 110.66590 * 41.28522 * 8 7 6 41 41 H 1.09002 * 110.72477 * 204.22210 * 9 8 7 42 42 H 1.09001 * 110.72231 * 80.94529 * 9 8 7 43 43 H 1.09001 * 110.30573 * 263.03815 * 10 9 8 44 44 H 1.09000 * 110.30856 * 140.87818 * 10 9 8 45 45 H 1.08995 * 109.91863 * 333.50838 * 11 7 6 46 46 H 1.09002 * 109.91591 * 94.60982 * 11 7 6 47 47 H 1.08997 * 109.46676 * 90.00676 * 16 15 12 48 48 H 1.09004 * 109.47119 * 210.00467 * 16 15 12 49 49 H 1.09004 * 109.46994 * 330.00289 * 16 15 12 50 50 H 1.08999 * 109.46844 * 59.99310 * 19 17 15 51 51 H 1.08996 * 109.47469 * 179.97438 * 19 17 15 52 52 H 1.09001 * 109.46560 * 299.99806 * 19 17 15 53 53 H 0.97000 * 119.99663 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2381 1.3378 1.2634 6 6 4.3844 -0.1361 1.6476 7 7 5.1189 -0.2410 2.9154 8 6 4.4981 0.6104 3.9623 9 6 5.0295 -0.0054 5.2811 10 6 5.0362 -1.5211 4.9768 11 6 5.0746 -1.6229 3.4408 12 16 4.3324 1.5677 -1.4296 13 8 5.6154 1.0011 -1.2015 14 8 3.4502 1.1103 -2.4454 15 7 4.5774 3.1805 -1.7146 16 6 5.7848 3.8385 -1.2091 17 6 3.5867 3.9493 -2.4719 18 1 2.7644 3.2956 -2.7627 19 6 4.2428 4.5314 -3.7257 20 6 3.0586 5.0706 -1.6147 21 1 3.4240 5.1976 -0.6064 22 6 2.1081 5.9337 -2.1173 23 7 1.6627 5.7788 -3.3451 24 14 1.4529 7.3231 -1.0545 25 1 2.5731 8.2141 -0.6586 26 1 0.4488 8.1025 -1.8223 27 1 0.8164 6.7577 0.1622 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 5.2263 1.7830 1.1484 36 1 3.6911 1.8645 2.0454 37 1 3.3961 -0.5813 1.7627 38 1 4.9314 -0.6628 0.8656 39 1 4.8261 1.6449 3.8613 40 1 3.4111 0.5441 3.9174 41 1 4.3577 0.2188 6.1097 42 1 6.0379 0.3497 5.4937 43 1 4.1311 -1.9887 5.3645 44 1 5.9201 -1.9899 5.4093 45 1 4.1793 -2.1289 3.0796 46 1 5.9630 -2.1692 3.1241 47 1 6.5746 3.7729 -1.9574 48 1 5.5676 4.8862 -1.0010 49 1 6.1105 3.3460 -0.2928 50 1 4.6248 3.7204 -4.3456 51 1 3.5056 5.1031 -4.2894 52 1 5.0652 5.1851 -3.4351 53 1 0.9943 6.3863 -3.6988 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352649527.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:14 Heat of formation + Delta-G solvation = -94.433068 kcal Electronic energy + Delta-G solvation = -31480.271388 eV Core-core repulsion = 27512.773634 eV Total energy + Delta-G solvation = -3967.497754 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.06993 -38.43761 -38.02962 -37.89145 -36.89644 -34.50577 -34.38912 -32.84018 -30.93802 -29.90979 -28.78920 -27.25777 -27.01084 -26.43579 -23.95269 -22.63396 -22.48629 -21.67113 -21.49364 -19.92195 -18.80740 -18.48939 -18.29721 -17.42349 -16.91880 -16.83461 -16.54825 -15.94526 -15.85893 -15.22328 -15.09732 -14.98604 -14.82709 -14.65012 -14.47510 -13.90520 -13.87067 -13.70572 -13.52909 -13.37398 -13.34456 -13.18721 -13.12536 -12.98736 -12.80121 -12.74112 -12.67386 -12.57706 -12.50923 -12.23589 -12.22479 -12.14187 -12.07770 -11.99498 -11.92048 -11.72307 -11.48945 -11.37241 -11.19143 -10.48242 -10.11222 -9.65467 -9.35686 -8.07630 -6.22889 -0.36111 1.47805 1.48787 1.56075 1.92615 2.45503 2.51283 3.05739 3.20699 3.36652 3.62867 3.74166 3.80652 4.03458 4.06210 4.06752 4.11780 4.23050 4.23694 4.39236 4.40900 4.50765 4.63504 4.65763 4.69572 4.73992 4.75942 4.78255 4.92302 4.94141 4.94531 4.96357 4.98311 5.01521 5.06680 5.10248 5.13332 5.16057 5.22807 5.23664 5.28934 5.35057 5.40793 5.54490 5.62208 5.74899 5.86462 5.96415 6.05600 6.11195 6.29248 6.85929 7.46892 8.96890 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011741 B = 0.003648 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.330753 B = 7674.010759 C = 7907.826052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.125 3.875 4 N -0.997 5.997 5 C 0.128 3.872 6 C 0.032 3.968 7 N -0.529 5.529 8 C 0.024 3.976 9 C -0.120 4.120 10 C -0.126 4.126 11 C 0.030 3.970 12 S 2.786 3.214 13 O -1.002 7.002 14 O -1.012 7.012 15 N -0.999 5.999 16 C 0.101 3.899 17 C 0.275 3.725 18 H 0.024 0.976 19 C -0.140 4.140 20 C -0.529 4.529 21 H 0.069 0.931 22 C 0.019 3.981 23 N -0.918 5.918 24 Si 0.958 3.042 25 H -0.271 1.271 26 H -0.290 1.290 27 H -0.269 1.269 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.044 0.956 46 H 0.074 0.926 47 H 0.049 0.951 48 H 0.078 0.922 49 H 0.072 0.928 50 H 0.015 0.985 51 H 0.071 0.929 52 H 0.043 0.957 53 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.520 -10.610 17.151 20.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C 0.000 4.000 4 N -0.836 5.836 5 C 0.002 3.998 6 C -0.097 4.097 7 N -0.254 5.254 8 C -0.104 4.104 9 C -0.158 4.158 10 C -0.164 4.164 11 C -0.098 4.098 12 S 2.797 3.203 13 O -0.986 6.986 14 O -0.996 6.996 15 N -0.840 5.840 16 C -0.045 4.045 17 C 0.170 3.830 18 H 0.042 0.958 19 C -0.200 4.200 20 C -0.568 4.568 21 H 0.087 0.913 22 C -0.181 4.181 23 N -0.557 5.557 24 Si 0.784 3.216 25 H -0.196 1.196 26 H -0.216 1.216 27 H -0.194 1.194 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.063 0.937 46 H 0.093 0.907 47 H 0.068 0.932 48 H 0.097 0.903 49 H 0.091 0.909 50 H 0.034 0.966 51 H 0.090 0.910 52 H 0.062 0.938 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.230 -11.087 16.342 20.011 hybrid contribution -1.309 0.808 -0.054 1.539 sum 1.921 -10.279 16.288 19.356 Atomic orbital electron populations 1.21686 0.93832 1.02615 1.02299 1.22068 0.97490 0.96415 1.02119 1.21407 0.77446 0.97569 1.03552 1.57800 1.15430 1.88201 1.22154 1.21367 0.96649 0.96383 0.85368 1.22768 0.97007 0.97244 0.92722 1.64740 1.50664 1.07492 1.02525 1.23406 0.97457 0.98357 0.91162 1.22483 1.02125 0.94677 0.96511 1.22386 1.03091 0.97136 0.93779 1.22953 1.01183 0.89748 0.95883 1.01606 0.72335 0.73249 0.73133 1.93526 1.41331 1.77371 1.86357 1.93527 1.67646 1.80742 1.57673 1.57721 1.30300 1.28307 1.67677 1.21375 0.84993 0.99909 0.98174 1.18391 0.84905 0.90593 0.89077 0.95845 1.21962 1.00289 0.99127 0.98588 1.21557 1.22551 1.12752 0.99940 0.91273 1.25672 0.96528 0.99851 0.96058 1.70015 1.30516 1.38916 1.16278 0.85616 0.78048 0.79188 0.78779 1.19574 1.21605 1.19353 0.91211 0.91094 0.93602 0.93617 0.90075 0.88414 0.92312 0.90263 0.88297 0.92817 0.92305 0.89678 0.93059 0.89528 0.90850 0.90508 0.90228 0.93712 0.90749 0.93200 0.90298 0.90947 0.96550 0.91026 0.93770 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.91 71.98 0.71 -2.58 16 2 C -0.14 -3.75 6.05 30.60 0.18 -3.56 16 3 C 0.13 3.84 5.37 86.38 0.46 4.30 16 4 N -1.00 -32.26 2.87 -515.78 -1.48 -33.74 16 5 C 0.13 3.38 5.03 86.38 0.43 3.81 16 6 C 0.03 0.81 5.14 86.31 0.44 1.25 16 7 N -0.53 -11.50 5.40 -883.00 -4.76 -16.27 16 8 C 0.02 0.40 5.10 86.65 0.44 0.84 16 9 C -0.12 -1.61 7.06 31.80 0.22 -1.38 16 10 C -0.13 -1.66 6.93 31.47 0.22 -1.44 16 11 C 0.03 0.54 6.70 86.44 0.58 1.12 16 12 S 2.79 113.42 5.96 -56.49 -0.34 113.09 16 13 O -1.00 -41.82 16.19 -128.00 -2.07 -43.90 16 14 O -1.01 -48.09 15.67 -128.00 -2.01 -50.10 16 15 N -1.00 -42.10 3.12 -520.43 -1.62 -43.73 16 16 C 0.10 3.58 9.28 127.77 1.19 4.76 16 17 C 0.27 13.59 2.62 44.25 0.12 13.70 16 18 H 0.02 1.33 6.91 -2.39 -0.02 1.31 16 19 C -0.14 -6.84 8.97 71.98 0.65 -6.19 16 20 C -0.53 -26.58 7.99 25.60 0.20 -26.38 16 21 H 0.07 3.31 7.33 -2.91 -0.02 3.29 16 22 C 0.02 0.96 5.30 84.66 0.45 1.41 16 23 N -0.92 -50.57 11.32 21.45 0.24 -50.33 16 24 Si 0.96 40.58 29.54 68.60 2.03 42.61 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 27 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 28 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.80 5.69 -2.39 -0.01 1.79 16 33 H 0.10 2.49 8.00 -2.39 -0.02 2.47 16 34 H 0.06 2.20 7.61 -2.39 -0.02 2.18 16 35 H 0.08 2.20 7.24 -2.39 -0.02 2.19 16 36 H 0.10 2.15 6.65 -2.39 -0.02 2.13 16 37 H 0.05 1.21 5.36 -2.39 -0.01 1.19 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.08 1.45 7.66 -2.39 -0.02 1.43 16 40 H 0.05 0.83 8.00 -2.39 -0.02 0.81 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 45 H 0.04 0.79 7.57 -2.39 -0.02 0.77 16 46 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.08 2.79 7.02 -2.38 -0.02 2.78 16 49 H 0.07 2.20 7.42 -2.38 -0.02 2.18 16 50 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 52 H 0.04 1.99 7.67 -2.39 -0.02 1.97 16 53 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -64.51 415.06 -2.85 -67.36 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.86 Total: 25.32 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 6.31 Total: -10.32 kcal Atomic # 7 Polarization: -136.44 SS G_CDS: -7.62 Total: -144.06 kcal Atomic # 8 Polarization: -89.92 SS G_CDS: -4.08 Total: -94.00 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Atomic # 16 Polarization: 113.42 SS G_CDS: -0.34 Total: 113.09 kcal Total: -64.51 -2.85 -67.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352649527.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.073 kcal (2) G-P(sol) polarization free energy of solvation -64.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds