Wall clock time and date at job start Wed Apr 1 2020 04:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47401 * 2 1 4 4 N 1.46901 * 109.47206 * 119.99677 * 2 1 3 5 5 C 1.46906 * 111.00022 * 56.04386 * 4 2 1 6 6 C 1.46905 * 111.00205 * 179.97438 * 4 2 1 7 7 C 1.53000 * 109.46812 * 170.00030 * 6 4 2 8 8 C 1.53004 * 109.46764 * 179.97438 * 7 6 4 9 9 N 1.46496 * 109.46980 * 179.97438 * 8 7 6 10 10 C 1.34787 * 119.99915 * 180.02562 * 9 8 7 11 11 O 1.21360 * 119.99648 * 0.02562 * 10 9 8 12 12 C 1.49357 * 119.99655 * 180.02562 * 10 9 8 13 13 O 1.21367 * 120.00130 * 0.02562 * 12 10 9 14 14 N 1.34780 * 119.99366 * 180.02562 * 12 10 9 15 15 C 1.39743 * 119.99714 * 185.11396 * 14 12 10 16 16 C 1.39344 * 119.95114 * 34.20000 * 15 14 12 17 17 C 1.38468 * 120.41849 * 179.97438 * 16 15 14 18 18 C 1.37693 * 120.33083 * 0.28100 * 17 16 15 19 19 C 1.40744 * 119.89527 * 359.49464 * 18 17 16 20 20 C 1.41413 * 120.20765 * 180.24943 * 19 18 17 21 21 H 1.07999 * 120.00217 * 205.30599 * 20 19 18 22 22 C 1.39933 * 119.99910 * 25.31228 * 20 19 18 23 23 N 1.30826 * 120.00058 * 16.69518 * 22 20 19 24 24 Si 1.86802 * 120.00125 * 196.69109 * 22 20 19 25 25 H 1.48501 * 109.47181 * 89.99670 * 24 22 20 26 26 H 1.48496 * 109.47457 * 210.00328 * 24 22 20 27 27 H 1.48510 * 109.46950 * 330.00156 * 24 22 20 28 28 C 1.38304 * 119.95238 * 214.22580 * 15 14 12 29 29 H 1.09003 * 109.46874 * 300.00561 * 1 2 3 30 30 H 1.08995 * 109.46966 * 60.00024 * 1 2 3 31 31 H 1.08997 * 109.46950 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47240 * 239.99756 * 2 1 3 33 33 H 1.09004 * 109.46515 * 299.99684 * 3 2 1 34 34 H 1.08994 * 109.47303 * 59.99938 * 3 2 1 35 35 H 1.09000 * 109.47331 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.47206 * 183.95350 * 5 4 2 37 37 H 1.09000 * 109.47040 * 303.96151 * 5 4 2 38 38 H 1.09008 * 109.46750 * 63.95180 * 5 4 2 39 39 H 1.09000 * 109.47094 * 50.00141 * 6 4 2 40 40 H 1.08997 * 109.47086 * 290.00366 * 6 4 2 41 41 H 1.08999 * 109.46999 * 60.00934 * 7 6 4 42 42 H 1.08997 * 109.47569 * 300.00040 * 7 6 4 43 43 H 1.09000 * 109.47116 * 60.00126 * 8 7 6 44 44 H 1.08997 * 109.47111 * 300.00322 * 8 7 6 45 45 H 0.96993 * 120.00253 * 0.02562 * 9 8 7 46 46 H 0.96996 * 120.00056 * 5.11378 * 14 12 10 47 47 H 1.07990 * 119.79277 * 0.02562 * 16 15 14 48 48 H 1.08007 * 119.83639 * 179.97438 * 17 16 15 49 49 H 1.08009 * 120.05223 * 179.73911 * 18 17 16 50 50 H 0.97001 * 120.00187 * 180.02562 * 23 22 20 51 51 H 1.08005 * 120.15967 * 359.94905 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4729 -2.0535 1.2818 6 6 3.4882 -0.7126 1.2331 7 6 3.9601 -1.2124 2.6000 8 6 5.4896 -1.2340 2.6349 9 7 5.9415 -1.7120 3.9438 10 6 7.2598 -1.8142 4.2056 11 8 8.0722 -1.5098 3.3571 12 6 7.7204 -2.3021 5.5400 13 8 6.9078 -2.6069 6.3883 14 7 9.0386 -2.4037 5.8019 15 6 9.4702 -2.9600 7.0090 16 6 8.7450 -3.9943 7.5971 17 6 9.1641 -4.5529 8.7927 18 6 10.3000 -4.0880 9.4170 19 6 11.0455 -3.0470 8.8326 20 6 12.2159 -2.5680 9.4654 21 1 12.5555 -1.5596 9.2808 22 6 12.9342 -3.4008 10.3308 23 7 12.7331 -4.6933 10.3116 24 14 14.1801 -2.6668 11.5133 25 1 13.5084 -2.3307 12.7944 26 1 15.2629 -3.6512 11.7654 27 1 14.7595 -1.4347 10.9201 28 6 10.6163 -2.4827 7.6185 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.6767 1.9562 -0.8901 34 1 1.6768 1.9563 0.8899 35 1 3.1301 1.4425 -0.0005 36 1 1.7948 -2.5186 2.2135 37 1 0.3842 -2.0099 1.2545 38 1 1.8342 -2.6417 0.4381 39 1 3.8694 0.2943 1.0630 40 1 3.8604 -1.3783 0.4545 41 1 3.5790 -2.2194 2.7700 42 1 3.5880 -0.5467 3.3787 43 1 5.8711 -0.2272 2.4646 44 1 5.8614 -1.8999 1.8562 45 1 5.2921 -1.9549 4.6221 46 1 9.6877 -2.0909 5.1525 47 1 7.8508 -4.3632 7.1169 48 1 8.5946 -5.3540 9.2405 49 1 10.6205 -4.5241 10.3517 50 1 13.2308 -5.2706 10.9117 51 1 11.1794 -1.6813 7.1634 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453588300.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:51 Heat of formation + Delta-G solvation = -49.308518 kcal Electronic energy + Delta-G solvation = -28885.065972 eV Core-core repulsion = 24784.081014 eV Total energy + Delta-G solvation = -4100.984958 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.61111 -39.13334 -38.67156 -37.16872 -35.92829 -34.56202 -33.30498 -33.01435 -31.05430 -29.88926 -28.76370 -28.40878 -26.29442 -25.41054 -25.20612 -23.58775 -21.78019 -21.23971 -20.91017 -20.36386 -19.75280 -18.35023 -17.61796 -16.88011 -16.58169 -16.15792 -15.72510 -15.53998 -15.31384 -15.25053 -14.96379 -14.78463 -14.58602 -14.19091 -13.88078 -13.65577 -13.16753 -13.05453 -12.93093 -12.73645 -12.68703 -12.54338 -12.27920 -12.21301 -11.90746 -11.81514 -11.72422 -11.61919 -11.49753 -11.32561 -11.20524 -11.16568 -10.90444 -10.66429 -10.55053 -10.15446 -9.80983 -9.45648 -9.39350 -9.21378 -8.99448 -8.78739 -7.51821 -7.00055 -6.77628 -4.40343 1.48833 2.43698 2.77377 2.85311 3.07260 3.10634 3.19900 3.37700 3.52661 3.85767 3.93308 4.36122 4.47890 4.52017 4.60764 4.63194 4.67329 4.72886 4.87215 4.99147 5.03799 5.09648 5.18078 5.24799 5.29415 5.36151 5.36879 5.43435 5.57898 5.64369 5.69611 5.70998 5.79603 5.84273 6.07511 6.21843 6.43782 6.58299 6.60502 6.63526 6.81885 6.87845 6.98969 7.08699 7.20425 7.47283 7.53664 7.73851 7.92843 7.98730 8.05416 8.21478 8.37525 8.60406 8.85747 8.91077 10.17558 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.034045 B = 0.001442 C = 0.001411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.246617 B =19419.144004 C =19842.645855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.075 3.925 3 C -0.149 4.149 4 N -0.538 5.538 5 C 0.015 3.985 6 C 0.054 3.946 7 C -0.130 4.130 8 C 0.119 3.881 9 N -0.703 5.703 10 C 0.511 3.489 11 O -0.522 6.522 12 C 0.497 3.503 13 O -0.506 6.506 14 N -0.631 5.631 15 C 0.144 3.856 16 C -0.224 4.224 17 C -0.096 4.096 18 C -0.162 4.162 19 C 0.121 3.879 20 C -0.463 4.463 21 H 0.078 0.922 22 C 0.077 3.923 23 N -0.794 5.794 24 Si 0.909 3.091 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.262 1.262 28 C -0.238 4.238 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.025 0.975 39 H 0.084 0.916 40 H 0.037 0.963 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.414 0.586 46 H 0.412 0.588 47 H 0.101 0.899 48 H 0.094 0.906 49 H 0.121 0.879 50 H 0.281 0.719 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.308 6.600 -17.810 27.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 C -0.206 4.206 4 N -0.262 5.262 5 C -0.133 4.133 6 C -0.075 4.075 7 C -0.168 4.168 8 C -0.005 4.005 9 N -0.358 5.358 10 C 0.292 3.708 11 O -0.398 6.398 12 C 0.278 3.722 13 O -0.381 6.381 14 N -0.276 5.276 15 C 0.053 3.947 16 C -0.245 4.245 17 C -0.115 4.115 18 C -0.181 4.181 19 C 0.118 3.882 20 C -0.493 4.493 21 H 0.096 0.904 22 C -0.141 4.141 23 N -0.420 5.420 24 Si 0.734 3.266 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.186 1.186 28 C -0.259 4.259 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.043 0.957 39 H 0.102 0.898 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.250 0.750 46 H 0.249 0.751 47 H 0.119 0.881 48 H 0.112 0.888 49 H 0.138 0.862 50 H 0.092 0.908 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.397 6.644 -17.359 26.865 hybrid contribution 0.908 -0.249 -0.253 0.975 sum -18.490 6.395 -17.612 26.324 Atomic orbital electron populations 1.21924 0.94217 1.02071 1.02359 1.21626 0.95761 0.95169 0.90740 1.21925 1.01195 0.95150 1.02364 1.62037 1.07712 1.17285 1.39208 1.22531 1.00860 0.88717 1.01151 1.22082 0.87527 1.01763 0.96087 1.21801 0.93527 1.02893 0.98574 1.21379 0.94199 1.00466 0.84421 1.45708 1.06951 1.66120 1.16975 1.20313 0.83253 0.78855 0.88415 1.90750 1.53339 1.47973 1.47739 1.19946 0.83993 0.80594 0.87666 1.90775 1.53065 1.47577 1.46653 1.43187 1.06294 1.58576 1.19537 1.17448 0.96438 0.95025 0.85768 1.20286 1.02850 1.01035 1.00281 1.20576 0.96834 0.98819 0.95227 1.21417 0.94585 1.00985 1.01142 1.17374 0.91529 0.90400 0.88861 1.19540 1.07278 0.99835 1.22642 0.90352 1.25888 0.97497 0.94340 0.96376 1.69816 1.36336 1.03971 1.31849 0.86293 0.79692 0.79861 0.80757 1.19265 1.20325 1.18632 1.20736 1.00159 1.06727 0.98325 0.91628 0.92190 0.92440 0.94298 0.92191 0.91582 0.92353 0.90938 0.90884 0.95670 0.89797 0.94470 0.90909 0.89948 0.90861 0.91096 0.74965 0.75140 0.88092 0.88829 0.86158 0.90830 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 8.84 37.16 0.33 -0.42 16 2 C 0.08 0.45 2.68 -67.71 -0.18 0.26 16 3 C -0.15 -0.81 8.99 37.16 0.33 -0.47 16 4 N -0.54 -3.61 4.63 -234.87 -1.09 -4.69 16 5 C 0.02 0.09 8.95 60.07 0.54 0.63 16 6 C 0.05 0.34 4.77 -3.82 -0.02 0.33 16 7 C -0.13 -0.87 5.25 -26.73 -0.14 -1.01 16 8 C 0.12 1.04 5.67 -4.04 -0.02 1.01 16 9 N -0.70 -7.91 5.55 -60.76 -0.34 -8.25 16 10 C 0.51 7.59 7.89 -11.62 -0.09 7.50 16 11 O -0.52 -8.60 16.48 5.49 0.09 -8.51 16 12 C 0.50 8.83 7.62 -11.63 -0.09 8.74 16 13 O -0.51 -9.99 14.20 5.48 0.08 -9.91 16 14 N -0.63 -11.96 5.32 -10.34 -0.05 -12.01 16 15 C 0.14 3.29 6.25 -83.82 -0.52 2.76 16 16 C -0.22 -5.24 8.66 -39.09 -0.34 -5.58 16 17 C -0.10 -2.28 10.01 -39.70 -0.40 -2.68 16 18 C -0.16 -4.19 8.69 -38.83 -0.34 -4.52 16 19 C 0.12 3.21 5.57 -106.85 -0.59 2.61 16 20 C -0.46 -12.12 9.05 -37.74 -0.34 -12.46 16 21 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 22 C 0.08 1.90 5.16 -17.35 -0.09 1.81 16 23 N -0.79 -20.26 10.94 55.55 0.61 -19.65 16 24 Si 0.91 18.48 29.59 -169.99 -5.03 13.45 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 27 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 28 C -0.24 -5.77 9.70 -38.67 -0.38 -6.14 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.28 6.26 -51.93 -0.32 -0.05 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.32 6.20 -51.93 -0.32 -0.01 16 36 H 0.07 0.43 6.47 -51.93 -0.34 0.09 16 37 H 0.07 0.39 6.01 -51.93 -0.31 0.08 16 38 H 0.02 0.15 8.14 -51.92 -0.42 -0.27 16 39 H 0.08 0.52 5.83 -51.93 -0.30 0.21 16 40 H 0.04 0.24 8.12 -51.93 -0.42 -0.18 16 41 H 0.07 0.48 6.55 -51.93 -0.34 0.14 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.41 4.25 7.94 -40.82 -0.32 3.93 16 46 H 0.41 6.95 8.30 -40.82 -0.34 6.61 16 47 H 0.10 2.29 6.46 -52.49 -0.34 1.95 16 48 H 0.09 2.00 8.06 -52.48 -0.42 1.57 16 49 H 0.12 3.19 6.17 -52.48 -0.32 2.86 16 50 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 51 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 LS Contribution 411.67 15.07 6.20 6.20 Total: -1.00 -29.76 411.67 -9.76 -39.51 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -7.88 Total: 11.50 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -2.34 Total: -7.64 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: -0.87 Total: -44.61 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.17 Total: -18.42 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -29.76 -9.76 -39.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453588300.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.795 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds