Wall clock time and date at job start Wed Apr 1 2020 04:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47401 * 2 1 4 4 N 1.46901 * 109.47206 * 119.99677 * 2 1 3 5 5 C 1.46906 * 111.00022 * 56.04386 * 4 2 1 6 6 C 1.46905 * 111.00205 * 179.97438 * 4 2 1 7 7 C 1.53000 * 109.46812 * 170.00030 * 6 4 2 8 8 C 1.53004 * 109.46764 * 179.97438 * 7 6 4 9 9 N 1.46496 * 109.46980 * 179.97438 * 8 7 6 10 10 C 1.34787 * 119.99915 * 180.02562 * 9 8 7 11 11 O 1.21360 * 119.99648 * 0.02562 * 10 9 8 12 12 C 1.49357 * 119.99655 * 180.02562 * 10 9 8 13 13 O 1.21367 * 120.00130 * 0.02562 * 12 10 9 14 14 N 1.34780 * 119.99366 * 180.02562 * 12 10 9 15 15 C 1.39743 * 119.99714 * 185.11396 * 14 12 10 16 16 C 1.39344 * 119.95114 * 34.20000 * 15 14 12 17 17 C 1.38468 * 120.41849 * 179.97438 * 16 15 14 18 18 C 1.37693 * 120.33083 * 0.28100 * 17 16 15 19 19 C 1.40744 * 119.89527 * 359.49464 * 18 17 16 20 20 C 1.41413 * 120.20765 * 180.24943 * 19 18 17 21 21 H 1.07999 * 120.00217 * 205.30599 * 20 19 18 22 22 C 1.39933 * 119.99910 * 25.31228 * 20 19 18 23 23 N 1.30826 * 120.00058 * 16.69518 * 22 20 19 24 24 Si 1.86802 * 120.00125 * 196.69109 * 22 20 19 25 25 H 1.48501 * 109.47181 * 89.99670 * 24 22 20 26 26 H 1.48496 * 109.47457 * 210.00328 * 24 22 20 27 27 H 1.48510 * 109.46950 * 330.00156 * 24 22 20 28 28 C 1.38304 * 119.95238 * 214.22580 * 15 14 12 29 29 H 1.09003 * 109.46874 * 300.00561 * 1 2 3 30 30 H 1.08995 * 109.46966 * 60.00024 * 1 2 3 31 31 H 1.08997 * 109.46950 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47240 * 239.99756 * 2 1 3 33 33 H 1.09004 * 109.46515 * 299.99684 * 3 2 1 34 34 H 1.08994 * 109.47303 * 59.99938 * 3 2 1 35 35 H 1.09000 * 109.47331 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.47206 * 183.95350 * 5 4 2 37 37 H 1.09000 * 109.47040 * 303.96151 * 5 4 2 38 38 H 1.09008 * 109.46750 * 63.95180 * 5 4 2 39 39 H 1.09000 * 109.47094 * 50.00141 * 6 4 2 40 40 H 1.08997 * 109.47086 * 290.00366 * 6 4 2 41 41 H 1.08999 * 109.46999 * 60.00934 * 7 6 4 42 42 H 1.08997 * 109.47569 * 300.00040 * 7 6 4 43 43 H 1.09000 * 109.47116 * 60.00126 * 8 7 6 44 44 H 1.08997 * 109.47111 * 300.00322 * 8 7 6 45 45 H 0.96993 * 120.00253 * 0.02562 * 9 8 7 46 46 H 0.96996 * 120.00056 * 5.11378 * 14 12 10 47 47 H 1.07990 * 119.79277 * 0.02562 * 16 15 14 48 48 H 1.08007 * 119.83639 * 179.97438 * 17 16 15 49 49 H 1.08009 * 120.05223 * 179.73911 * 18 17 16 50 50 H 0.97001 * 120.00187 * 180.02562 * 23 22 20 51 51 H 1.08005 * 120.15967 * 359.94905 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4729 -2.0535 1.2818 6 6 3.4882 -0.7126 1.2331 7 6 3.9601 -1.2124 2.6000 8 6 5.4896 -1.2340 2.6349 9 7 5.9415 -1.7120 3.9438 10 6 7.2598 -1.8142 4.2056 11 8 8.0722 -1.5098 3.3571 12 6 7.7204 -2.3021 5.5400 13 8 6.9078 -2.6069 6.3883 14 7 9.0386 -2.4037 5.8019 15 6 9.4702 -2.9600 7.0090 16 6 8.7450 -3.9943 7.5971 17 6 9.1641 -4.5529 8.7927 18 6 10.3000 -4.0880 9.4170 19 6 11.0455 -3.0470 8.8326 20 6 12.2159 -2.5680 9.4654 21 1 12.5555 -1.5596 9.2808 22 6 12.9342 -3.4008 10.3308 23 7 12.7331 -4.6933 10.3116 24 14 14.1801 -2.6668 11.5133 25 1 13.5084 -2.3307 12.7944 26 1 15.2629 -3.6512 11.7654 27 1 14.7595 -1.4347 10.9201 28 6 10.6163 -2.4827 7.6185 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.6767 1.9562 -0.8901 34 1 1.6768 1.9563 0.8899 35 1 3.1301 1.4425 -0.0005 36 1 1.7948 -2.5186 2.2135 37 1 0.3842 -2.0099 1.2545 38 1 1.8342 -2.6417 0.4381 39 1 3.8694 0.2943 1.0630 40 1 3.8604 -1.3783 0.4545 41 1 3.5790 -2.2194 2.7700 42 1 3.5880 -0.5467 3.3787 43 1 5.8711 -0.2272 2.4646 44 1 5.8614 -1.8999 1.8562 45 1 5.2921 -1.9549 4.6221 46 1 9.6877 -2.0909 5.1525 47 1 7.8508 -4.3632 7.1169 48 1 8.5946 -5.3540 9.2405 49 1 10.6205 -4.5241 10.3517 50 1 13.2308 -5.2706 10.9117 51 1 11.1794 -1.6813 7.1634 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453588300.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:50 Heat of formation + Delta-G solvation = -68.463775 kcal Electronic energy + Delta-G solvation = -28885.896606 eV Core-core repulsion = 24784.081014 eV Total energy + Delta-G solvation = -4101.815592 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.98115 -40.26473 -39.46698 -38.88599 -36.93287 -36.14547 -34.89581 -33.88106 -31.80921 -31.66866 -30.34727 -29.10314 -27.27927 -26.98201 -26.07188 -24.63024 -22.98215 -22.55759 -22.42284 -21.22296 -20.81347 -19.76263 -19.29832 -17.90663 -17.46027 -17.35773 -17.18294 -16.67811 -16.60623 -16.50275 -16.10361 -15.81964 -15.54060 -15.31018 -15.04902 -14.81091 -14.63455 -14.41140 -14.09321 -13.65088 -13.57667 -13.37751 -13.26349 -13.12029 -13.05317 -12.90223 -12.83653 -12.66153 -12.54165 -12.47184 -12.32282 -12.22045 -11.96502 -11.89798 -11.69914 -11.60085 -11.38181 -11.21525 -10.90347 -10.65564 -10.36238 -9.44314 -9.27666 -8.83582 -8.63750 -6.37601 0.11517 0.94988 1.01459 1.27678 1.41265 1.54133 1.54421 2.09946 2.22622 2.56962 2.74020 2.93468 3.35067 3.70370 3.85657 3.96384 4.04626 4.10467 4.14420 4.39288 4.42413 4.45335 4.52904 4.56320 4.60534 4.67659 4.73465 4.83290 4.89468 4.91240 4.94659 4.96839 4.99784 5.04750 5.05968 5.10370 5.14120 5.14726 5.23891 5.30625 5.34816 5.41227 5.64049 5.71349 5.90658 6.05807 6.07463 6.13260 6.16646 6.23705 6.43550 6.63233 6.69932 6.86687 6.92103 7.01143 8.33840 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.034045 B = 0.001442 C = 0.001411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.246617 B =19419.144004 C =19842.645855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.072 3.928 3 C -0.147 4.147 4 N -0.547 5.547 5 C 0.015 3.985 6 C 0.055 3.945 7 C -0.118 4.118 8 C 0.119 3.881 9 N -0.685 5.685 10 C 0.520 3.480 11 O -0.539 6.539 12 C 0.499 3.501 13 O -0.525 6.525 14 N -0.632 5.632 15 C 0.153 3.847 16 C -0.232 4.232 17 C -0.095 4.095 18 C -0.188 4.188 19 C 0.095 3.905 20 C -0.496 4.496 21 H 0.078 0.922 22 C 0.037 3.963 23 N -0.823 5.823 24 Si 0.983 3.017 25 H -0.263 1.263 26 H -0.268 1.268 27 H -0.258 1.258 28 C -0.251 4.251 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.037 0.963 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.024 0.976 39 H 0.087 0.913 40 H 0.038 0.962 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.420 0.580 46 H 0.422 0.578 47 H 0.110 0.890 48 H 0.116 0.884 49 H 0.107 0.893 50 H 0.289 0.711 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.075 7.254 -18.678 28.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.036 4.036 3 C -0.204 4.204 4 N -0.272 5.272 5 C -0.133 4.133 6 C -0.073 4.073 7 C -0.156 4.156 8 C -0.004 4.004 9 N -0.338 5.338 10 C 0.299 3.701 11 O -0.416 6.416 12 C 0.281 3.719 13 O -0.401 6.401 14 N -0.277 5.277 15 C 0.061 3.939 16 C -0.253 4.253 17 C -0.114 4.114 18 C -0.207 4.207 19 C 0.092 3.908 20 C -0.526 4.526 21 H 0.096 0.904 22 C -0.178 4.178 23 N -0.449 5.449 24 Si 0.804 3.196 25 H -0.188 1.188 26 H -0.192 1.192 27 H -0.182 1.182 28 C -0.273 4.273 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.043 0.957 39 H 0.105 0.895 40 H 0.056 0.944 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.258 0.742 46 H 0.261 0.739 47 H 0.128 0.872 48 H 0.134 0.866 49 H 0.125 0.875 50 H 0.100 0.900 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -20.216 7.304 -18.265 28.207 hybrid contribution 1.010 -0.462 -0.085 1.114 sum -19.206 6.842 -18.351 27.430 Atomic orbital electron populations 1.21899 0.93636 1.02246 1.02481 1.21686 0.96266 0.95274 0.90349 1.21908 1.01139 0.94890 1.02476 1.62053 1.07761 1.17688 1.39704 1.22550 1.01198 0.88426 1.01136 1.22053 0.87596 1.01947 0.95716 1.21690 0.91856 1.03206 0.98846 1.21559 0.95482 1.00494 0.82826 1.45727 1.05633 1.64361 1.18074 1.19686 0.84319 0.79283 0.86788 1.90757 1.53997 1.49238 1.47646 1.20490 0.83173 0.79551 0.88679 1.90761 1.53427 1.48193 1.47683 1.43124 1.07315 1.58720 1.18577 1.17469 0.95571 0.94285 0.86599 1.20464 1.03244 1.01289 1.00324 1.20824 0.96253 0.99003 0.95300 1.21366 0.95882 1.02128 1.01366 1.17738 0.92147 0.91071 0.89855 1.19811 1.08053 1.00287 1.24411 0.90354 1.26738 0.99229 0.94482 0.97345 1.69865 1.37318 1.05184 1.32493 0.85183 0.77148 0.79131 0.78128 1.18764 1.19235 1.18202 1.20879 1.01064 1.07207 0.98143 0.92263 0.91293 0.92244 0.94500 0.91281 0.92264 0.92409 0.90892 0.90412 0.95706 0.89514 0.94404 0.90451 0.90008 0.90556 0.90827 0.74200 0.73947 0.87210 0.86648 0.87513 0.90007 0.87379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.84 71.98 0.64 -0.64 16 2 C 0.07 0.76 2.68 44.91 0.12 0.88 16 3 C -0.15 -1.40 8.99 71.98 0.65 -0.75 16 4 N -0.55 -6.51 4.63 -897.00 -4.15 -10.66 16 5 C 0.01 0.15 8.95 127.69 1.14 1.30 16 6 C 0.06 0.61 4.77 86.30 0.41 1.02 16 7 C -0.12 -1.34 5.25 30.60 0.16 -1.18 16 8 C 0.12 1.82 5.67 86.38 0.49 2.31 16 9 N -0.68 -14.06 5.55 -464.50 -2.58 -16.64 16 10 C 0.52 14.61 7.89 87.24 0.69 15.30 16 11 O -0.54 -16.91 16.48 -3.28 -0.05 -16.96 16 12 C 0.50 17.18 7.62 87.24 0.66 17.84 16 13 O -0.52 -20.16 14.20 -3.30 -0.05 -20.21 16 14 N -0.63 -23.50 5.32 -304.98 -1.62 -25.12 16 15 C 0.15 6.97 6.25 38.16 0.24 7.20 16 16 C -0.23 -10.83 8.66 22.59 0.20 -10.63 16 17 C -0.09 -4.56 10.01 22.20 0.22 -4.34 16 18 C -0.19 -9.97 8.69 22.75 0.20 -9.77 16 19 C 0.09 5.13 5.57 -21.31 -0.12 5.02 16 20 C -0.50 -26.52 9.05 23.46 0.21 -26.31 16 21 H 0.08 4.03 7.90 -2.91 -0.02 4.00 16 22 C 0.04 1.86 5.16 85.25 0.44 2.30 16 23 N -0.82 -42.56 10.94 21.82 0.24 -42.32 16 24 Si 0.98 37.76 29.59 68.60 2.03 39.79 16 25 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 26 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 27 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 28 C -0.25 -12.35 9.70 22.86 0.22 -12.13 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.49 6.26 -2.39 -0.01 0.48 16 32 H 0.04 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.06 0.55 6.20 -2.39 -0.01 0.53 16 36 H 0.07 0.75 6.47 -2.39 -0.02 0.73 16 37 H 0.08 0.73 6.01 -2.39 -0.01 0.72 16 38 H 0.02 0.26 8.14 -2.38 -0.02 0.24 16 39 H 0.09 0.92 5.83 -2.39 -0.01 0.90 16 40 H 0.04 0.42 8.12 -2.39 -0.02 0.40 16 41 H 0.08 0.84 6.55 -2.39 -0.02 0.83 16 42 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.42 7.78 7.94 -92.71 -0.74 7.04 16 46 H 0.42 13.94 8.30 -92.71 -0.77 13.17 16 47 H 0.11 4.88 6.46 -2.92 -0.02 4.86 16 48 H 0.12 4.89 8.06 -2.91 -0.02 4.86 16 49 H 0.11 5.86 6.17 -2.91 -0.02 5.84 16 50 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 51 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -63.62 411.67 -0.16 -63.78 By element: Atomic # 1 Polarization: 41.47 SS G_CDS: -0.54 Total: 40.93 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 6.57 Total: -12.59 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -8.11 Total: -94.74 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -0.10 Total: -37.17 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Total: -63.62 -0.16 -63.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453588300.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.683 kcal (2) G-P(sol) polarization free energy of solvation -63.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds