Wall clock time and date at job start Wed Apr 1 2020 05:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47639 * 2 1 4 4 N 1.46899 * 109.47338 * 183.08669 * 3 2 1 5 5 C 1.46906 * 110.99769 * 64.39616 * 4 3 2 6 6 C 1.50698 * 109.47124 * 66.04842 * 5 4 3 7 7 O 1.21292 * 120.00000 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99680 * 180.02562 * 6 5 4 9 9 C 1.37090 * 119.99816 * 179.97438 * 8 6 5 10 10 H 1.08005 * 120.00310 * 359.97438 * 9 8 6 11 11 C 1.38949 * 120.00169 * 179.97438 * 9 8 6 12 12 N 1.31415 * 120.00297 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00070 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47255 * 89.99312 * 13 11 9 15 15 H 1.48499 * 109.47359 * 209.99832 * 13 11 9 16 16 H 1.48511 * 109.46742 * 329.99656 * 13 11 9 17 17 C 1.46901 * 111.00406 * 300.44115 * 4 3 2 18 18 H 1.09007 * 109.46669 * 62.06518 * 17 4 3 19 19 C 1.52997 * 109.47506 * 182.06537 * 17 4 3 20 20 C 1.50703 * 109.46932 * 302.06942 * 17 4 3 21 21 O 1.21281 * 119.99841 * 330.77797 * 20 17 4 22 22 N 1.34774 * 119.99764 * 150.77474 * 20 17 4 23 23 C 1.39924 * 119.99853 * 185.07552 * 22 20 17 24 24 C 1.38895 * 120.06930 * 331.49562 * 23 22 20 25 25 C 1.38095 * 119.93164 * 180.02562 * 24 23 22 26 26 C 1.38302 * 120.06633 * 359.97438 * 25 24 23 27 27 C 1.38259 * 120.14492 * 0.02562 * 26 25 24 28 28 C 1.38133 * 120.06985 * 359.71733 * 27 26 25 29 29 C 1.50698 * 120.04101 * 180.27716 * 28 27 26 30 30 H 1.09000 * 109.46861 * 300.00303 * 1 2 3 31 31 H 1.09000 * 109.46588 * 59.99929 * 1 2 3 32 32 H 1.08992 * 109.47260 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47266 * 239.99341 * 2 1 3 34 34 H 1.09005 * 109.47068 * 120.00591 * 2 1 3 35 35 H 1.08997 * 109.47248 * 63.08721 * 3 2 1 36 36 H 1.08997 * 109.46997 * 303.08533 * 3 2 1 37 37 H 1.09007 * 109.46786 * 186.04845 * 5 4 3 38 38 H 1.09002 * 109.46916 * 306.04413 * 5 4 3 39 39 H 0.97000 * 120.00307 * 359.97438 * 8 6 5 40 40 H 0.96995 * 120.00326 * 180.02562 * 12 11 9 41 41 H 1.09001 * 109.47424 * 300.00191 * 19 17 4 42 42 H 1.09000 * 109.46563 * 60.00078 * 19 17 4 43 43 H 1.08999 * 109.46902 * 179.97438 * 19 17 4 44 44 H 0.97001 * 120.00249 * 5.07610 * 22 20 17 45 45 H 1.08001 * 120.03702 * 359.97438 * 24 23 22 46 46 H 1.07995 * 119.96474 * 179.97438 * 25 24 23 47 47 H 1.08002 * 119.93014 * 179.97438 * 26 25 24 48 48 H 1.07998 * 119.96447 * 179.97438 * 27 26 25 49 49 H 1.08999 * 109.47076 * 270.28226 * 29 28 27 50 50 H 1.09006 * 109.46938 * 30.27954 * 29 28 27 51 51 H 1.08992 * 109.47696 * 150.27276 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5072 1.4430 -0.0746 5 6 3.9698 0.8728 -1.3470 6 6 3.5528 1.7725 -2.4817 7 8 2.9310 2.7884 -2.2531 8 7 3.8700 1.4476 -3.7507 9 6 3.4902 2.2657 -4.7831 10 1 2.9365 3.1704 -4.5796 11 6 3.8177 1.9312 -6.0913 12 7 3.4532 2.7152 -7.0810 13 14 4.7747 0.3661 -6.4436 14 1 3.8265 -0.7567 -6.6564 15 1 5.6005 0.5547 -7.6633 16 1 5.6581 0.0562 -5.2907 17 6 4.0927 0.7272 1.0669 18 1 3.7724 -0.3145 1.0455 19 6 5.6189 0.7933 0.9819 20 6 3.6328 1.3680 2.3510 21 8 3.3668 2.5510 2.3771 22 7 3.5171 0.6264 3.4704 23 6 2.9898 1.1951 4.6350 24 6 3.1294 2.5571 4.8692 25 6 2.6083 3.1153 6.0198 26 6 1.9475 2.3198 6.9382 27 6 1.8069 0.9638 6.7080 28 6 2.3212 0.4003 5.5565 29 6 2.1620 -1.0768 5.3033 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.7227 1.9400 0.9163 36 1 1.6323 1.9719 -0.8610 37 1 5.0563 0.7860 -1.3325 38 1 3.5283 -0.1143 -1.4847 39 1 4.3670 0.6349 -3.9336 40 1 3.6814 2.4814 -7.9943 41 1 5.9515 0.3299 0.0531 42 1 5.9391 1.8350 1.0032 43 1 6.0532 0.2626 1.8291 44 1 3.7993 -0.3017 3.4687 45 1 3.6457 3.1787 4.1527 46 1 2.7170 4.1741 6.2027 47 1 1.5412 2.7587 7.8375 48 1 1.2907 0.3453 7.4272 49 1 3.0096 -1.6121 5.7310 50 1 1.2396 -1.4274 5.7664 51 1 2.1213 -1.2591 4.2295 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490082727.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:01 Heat of formation + Delta-G solvation = -26.013652 kcal Electronic energy + Delta-G solvation = -31369.052191 eV Core-core repulsion = 27269.077375 eV Total energy + Delta-G solvation = -4099.974817 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.06099 -39.47070 -38.43306 -36.87120 -35.01581 -33.92833 -33.47550 -32.80553 -31.66257 -30.98423 -29.62410 -28.03420 -27.13065 -24.93124 -24.82419 -23.57972 -22.51971 -21.67725 -21.15883 -19.85192 -19.20050 -18.12956 -17.86484 -17.22720 -16.53768 -15.85476 -15.79406 -15.61878 -15.23376 -14.84182 -14.57887 -14.37401 -14.27264 -14.03542 -13.82977 -13.67137 -13.43729 -13.30060 -13.26525 -12.75479 -12.61892 -12.58337 -12.41636 -12.31588 -12.01828 -11.85985 -11.72071 -11.65460 -11.47161 -11.43381 -11.28604 -11.24397 -11.01399 -10.63229 -10.59387 -10.27786 -9.96022 -9.61946 -9.50470 -8.91713 -8.52788 -8.24188 -8.16055 -7.91897 -6.29029 -3.80282 1.07502 1.22725 2.43801 2.74383 3.02283 3.06343 3.15142 3.61408 3.75036 3.87486 4.11168 4.39426 4.56641 4.61822 4.68269 4.83869 4.91192 4.94611 4.99826 5.06157 5.12684 5.20661 5.21952 5.25222 5.30327 5.31833 5.36715 5.47542 5.49177 5.58064 5.62201 5.71645 5.79871 5.86377 5.89629 5.93429 5.95315 6.06388 6.10445 6.21434 6.22383 6.26301 6.31966 6.41795 6.61895 6.88864 7.05213 7.14982 7.29239 7.60221 8.00315 8.16866 8.62439 8.97805 9.44381 9.85988 10.84196 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020579 B = 0.002375 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.274454 B =11786.505859 C =11890.173917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.165 4.165 3 C 0.043 3.957 4 N -0.488 5.488 5 C 0.034 3.966 6 C 0.455 3.545 7 O -0.553 6.553 8 N -0.592 5.592 9 C -0.302 4.302 10 H 0.120 0.880 11 C 0.040 3.960 12 N -0.882 5.882 13 Si 0.879 3.121 14 H -0.272 1.272 15 H -0.277 1.277 16 H -0.269 1.269 17 C 0.065 3.935 18 H 0.061 0.939 19 C -0.147 4.147 20 C 0.520 3.480 21 O -0.486 6.486 22 N -0.675 5.675 23 C 0.151 3.849 24 C -0.128 4.128 25 C -0.106 4.106 26 C -0.138 4.138 27 C -0.103 4.103 28 C -0.120 4.120 29 C -0.114 4.114 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.054 0.946 39 H 0.369 0.631 40 H 0.273 0.727 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.408 0.592 45 H 0.151 0.849 46 H 0.124 0.876 47 H 0.120 0.880 48 H 0.123 0.877 49 H 0.069 0.931 50 H 0.070 0.930 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.007 -12.522 26.059 28.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.204 4.204 3 C -0.084 4.084 4 N -0.211 5.211 5 C -0.097 4.097 6 C 0.241 3.759 7 O -0.434 6.434 8 N -0.232 5.232 9 C -0.431 4.431 10 H 0.137 0.863 11 C -0.162 4.162 12 N -0.522 5.522 13 Si 0.706 3.294 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.195 1.195 17 C -0.047 4.047 18 H 0.079 0.921 19 C -0.205 4.205 20 C 0.307 3.693 21 O -0.357 6.357 22 N -0.321 5.321 23 C 0.057 3.943 24 C -0.148 4.148 25 C -0.124 4.124 26 C -0.157 4.157 27 C -0.122 4.122 28 C -0.123 4.123 29 C -0.171 4.171 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.202 0.798 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.244 0.756 45 H 0.168 0.832 46 H 0.142 0.858 47 H 0.138 0.862 48 H 0.140 0.860 49 H 0.088 0.912 50 H 0.089 0.911 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.569 -10.407 25.908 27.926 hybrid contribution 0.614 -2.608 -0.502 2.726 sum 1.182 -13.015 25.406 28.570 Atomic orbital electron populations 1.21625 0.95201 1.01189 1.02218 1.22240 0.97296 0.99771 1.01089 1.22575 0.85799 0.94639 1.05400 1.61659 1.08540 1.52032 0.98867 1.22064 1.01466 0.96478 0.89646 1.19529 0.85271 0.88194 0.82941 1.90555 1.42696 1.26957 1.83201 1.42188 1.51722 1.23251 1.06050 1.19420 1.33689 1.06009 0.83956 0.86258 1.25032 0.97925 0.97930 0.95340 1.69621 1.45936 1.37084 0.99588 0.86684 0.80394 0.83589 0.78780 1.19733 1.20220 1.19503 1.21594 0.97190 0.96181 0.89746 0.92140 1.21895 0.91631 1.04298 1.02648 1.20721 0.76949 0.87323 0.84351 1.90689 1.45584 1.15036 1.84363 1.43628 1.63248 1.15619 1.09590 1.17649 0.96883 0.93000 0.86797 1.21621 1.01109 0.94048 0.97993 1.21105 0.97703 0.99945 0.93666 1.21105 1.00901 0.93857 0.99840 1.20793 0.99958 0.95108 0.96341 1.19632 1.00438 0.96202 0.96033 1.20719 1.02593 0.91589 1.02177 0.92949 0.92085 0.93121 0.91696 0.93095 0.90627 0.87221 0.88714 0.92828 0.79827 0.91664 0.90633 0.90452 0.91888 0.75639 0.83191 0.85822 0.86182 0.85953 0.91219 0.91098 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.91 37.16 0.37 -1.42 16 2 C -0.16 -2.16 5.23 -26.74 -0.14 -2.30 16 3 C 0.04 0.72 4.60 -3.83 -0.02 0.70 16 4 N -0.49 -7.89 4.05 -229.47 -0.93 -8.82 16 5 C 0.03 0.56 5.06 -4.97 -0.03 0.54 16 6 C 0.46 10.25 7.47 -10.98 -0.08 10.16 16 7 O -0.55 -14.85 13.91 5.55 0.08 -14.77 16 8 N -0.59 -13.94 5.09 -10.96 -0.06 -14.00 16 9 C -0.30 -8.50 10.16 -14.94 -0.15 -8.66 16 10 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 11 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 12 N -0.88 -25.80 13.96 55.50 0.77 -25.03 16 13 Si 0.88 19.21 27.74 -169.99 -4.71 14.49 16 14 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 16 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 17 C 0.07 0.78 2.00 -68.86 -0.14 0.64 16 18 H 0.06 0.58 6.48 -51.93 -0.34 0.24 16 19 C -0.15 -1.49 8.91 37.16 0.33 -1.16 16 20 C 0.52 6.71 5.83 -10.98 -0.06 6.64 16 21 O -0.49 -8.25 12.53 5.56 0.07 -8.18 16 22 N -0.68 -6.65 4.89 -9.86 -0.05 -6.70 16 23 C 0.15 1.67 6.39 -83.69 -0.54 1.13 16 24 C -0.13 -1.57 8.77 -39.39 -0.35 -1.92 16 25 C -0.11 -1.10 10.04 -39.61 -0.40 -1.49 16 26 C -0.14 -1.24 10.04 -39.55 -0.40 -1.63 16 27 C -0.10 -0.89 9.70 -39.61 -0.38 -1.27 16 28 C -0.12 -1.10 5.90 -104.43 -0.62 -1.72 16 29 C -0.11 -0.71 9.45 36.00 0.34 -0.37 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.87 6.24 -51.93 -0.32 0.55 16 34 H 0.05 0.57 6.61 -51.93 -0.34 0.23 16 35 H 0.08 1.33 6.29 -51.93 -0.33 1.00 16 36 H 0.11 2.25 5.82 -51.93 -0.30 1.95 16 37 H 0.09 1.33 5.76 -51.92 -0.30 1.03 16 38 H 0.05 0.75 6.09 -51.93 -0.32 0.44 16 39 H 0.37 7.58 5.76 -40.82 -0.24 7.34 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.07 0.70 6.16 -51.93 -0.32 0.38 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.41 2.71 7.58 -40.82 -0.31 2.40 16 45 H 0.15 2.14 5.71 -52.49 -0.30 1.84 16 46 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 47 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 48 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 49 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 51 H 0.06 0.39 7.06 -51.93 -0.37 0.02 16 LS Contribution 400.24 15.07 6.03 6.03 Total: -1.00 -34.99 400.24 -8.71 -43.69 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -7.56 Total: 14.40 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -2.35 Total: -1.11 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.26 Total: -54.54 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.15 Total: -22.95 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.99 -8.71 -43.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490082727.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.677 kcal (2) G-P(sol) polarization free energy of solvation -34.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds