Wall clock time and date at job start Wed Apr 1 2020 05:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47639 * 2 1 4 4 N 1.46899 * 109.47338 * 183.08669 * 3 2 1 5 5 C 1.46906 * 110.99769 * 64.39616 * 4 3 2 6 6 C 1.50698 * 109.47124 * 66.04842 * 5 4 3 7 7 O 1.21292 * 120.00000 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99680 * 180.02562 * 6 5 4 9 9 C 1.37090 * 119.99816 * 179.97438 * 8 6 5 10 10 H 1.08005 * 120.00310 * 359.97438 * 9 8 6 11 11 C 1.38949 * 120.00169 * 179.97438 * 9 8 6 12 12 N 1.31415 * 120.00297 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00070 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47255 * 89.99312 * 13 11 9 15 15 H 1.48499 * 109.47359 * 209.99832 * 13 11 9 16 16 H 1.48511 * 109.46742 * 329.99656 * 13 11 9 17 17 C 1.46901 * 111.00406 * 300.44115 * 4 3 2 18 18 H 1.09007 * 109.46669 * 62.06518 * 17 4 3 19 19 C 1.52997 * 109.47506 * 182.06537 * 17 4 3 20 20 C 1.50703 * 109.46932 * 302.06942 * 17 4 3 21 21 O 1.21281 * 119.99841 * 330.77797 * 20 17 4 22 22 N 1.34774 * 119.99764 * 150.77474 * 20 17 4 23 23 C 1.39924 * 119.99853 * 185.07552 * 22 20 17 24 24 C 1.38895 * 120.06930 * 331.49562 * 23 22 20 25 25 C 1.38095 * 119.93164 * 180.02562 * 24 23 22 26 26 C 1.38302 * 120.06633 * 359.97438 * 25 24 23 27 27 C 1.38259 * 120.14492 * 0.02562 * 26 25 24 28 28 C 1.38133 * 120.06985 * 359.71733 * 27 26 25 29 29 C 1.50698 * 120.04101 * 180.27716 * 28 27 26 30 30 H 1.09000 * 109.46861 * 300.00303 * 1 2 3 31 31 H 1.09000 * 109.46588 * 59.99929 * 1 2 3 32 32 H 1.08992 * 109.47260 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47266 * 239.99341 * 2 1 3 34 34 H 1.09005 * 109.47068 * 120.00591 * 2 1 3 35 35 H 1.08997 * 109.47248 * 63.08721 * 3 2 1 36 36 H 1.08997 * 109.46997 * 303.08533 * 3 2 1 37 37 H 1.09007 * 109.46786 * 186.04845 * 5 4 3 38 38 H 1.09002 * 109.46916 * 306.04413 * 5 4 3 39 39 H 0.97000 * 120.00307 * 359.97438 * 8 6 5 40 40 H 0.96995 * 120.00326 * 180.02562 * 12 11 9 41 41 H 1.09001 * 109.47424 * 300.00191 * 19 17 4 42 42 H 1.09000 * 109.46563 * 60.00078 * 19 17 4 43 43 H 1.08999 * 109.46902 * 179.97438 * 19 17 4 44 44 H 0.97001 * 120.00249 * 5.07610 * 22 20 17 45 45 H 1.08001 * 120.03702 * 359.97438 * 24 23 22 46 46 H 1.07995 * 119.96474 * 179.97438 * 25 24 23 47 47 H 1.08002 * 119.93014 * 179.97438 * 26 25 24 48 48 H 1.07998 * 119.96447 * 179.97438 * 27 26 25 49 49 H 1.08999 * 109.47076 * 270.28226 * 29 28 27 50 50 H 1.09006 * 109.46938 * 30.27954 * 29 28 27 51 51 H 1.08992 * 109.47696 * 150.27276 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5072 1.4430 -0.0746 5 6 3.9698 0.8728 -1.3470 6 6 3.5528 1.7725 -2.4817 7 8 2.9310 2.7884 -2.2531 8 7 3.8700 1.4476 -3.7507 9 6 3.4902 2.2657 -4.7831 10 1 2.9365 3.1704 -4.5796 11 6 3.8177 1.9312 -6.0913 12 7 3.4532 2.7152 -7.0810 13 14 4.7747 0.3661 -6.4436 14 1 3.8265 -0.7567 -6.6564 15 1 5.6005 0.5547 -7.6633 16 1 5.6581 0.0562 -5.2907 17 6 4.0927 0.7272 1.0669 18 1 3.7724 -0.3145 1.0455 19 6 5.6189 0.7933 0.9819 20 6 3.6328 1.3680 2.3510 21 8 3.3668 2.5510 2.3771 22 7 3.5171 0.6264 3.4704 23 6 2.9898 1.1951 4.6350 24 6 3.1294 2.5571 4.8692 25 6 2.6083 3.1153 6.0198 26 6 1.9475 2.3198 6.9382 27 6 1.8069 0.9638 6.7080 28 6 2.3212 0.4003 5.5565 29 6 2.1620 -1.0768 5.3033 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.7227 1.9400 0.9163 36 1 1.6323 1.9719 -0.8610 37 1 5.0563 0.7860 -1.3325 38 1 3.5283 -0.1143 -1.4847 39 1 4.3670 0.6349 -3.9336 40 1 3.6814 2.4814 -7.9943 41 1 5.9515 0.3299 0.0531 42 1 5.9391 1.8350 1.0032 43 1 6.0532 0.2626 1.8291 44 1 3.7993 -0.3017 3.4687 45 1 3.6457 3.1787 4.1527 46 1 2.7170 4.1741 6.2027 47 1 1.5412 2.7587 7.8375 48 1 1.2907 0.3453 7.4272 49 1 3.0096 -1.6121 5.7310 50 1 1.2396 -1.4274 5.7664 51 1 2.1213 -1.2591 4.2295 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490082727.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:00 Heat of formation + Delta-G solvation = -52.007211 kcal Electronic energy + Delta-G solvation = -31370.179356 eV Core-core repulsion = 27269.077375 eV Total energy + Delta-G solvation = -4101.101982 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.00009 -40.70549 -39.70521 -38.20121 -35.93668 -35.90588 -34.50359 -33.72717 -33.47243 -32.04812 -30.42264 -29.41344 -27.75044 -26.64479 -25.83018 -24.76181 -23.44322 -22.67463 -22.05538 -21.25748 -20.76979 -19.88909 -18.74372 -18.20545 -17.82340 -17.14691 -16.82598 -16.73365 -16.59581 -16.12019 -15.58562 -15.56025 -15.32604 -15.18552 -14.99447 -14.78804 -14.63679 -14.50474 -14.37758 -14.05020 -13.86516 -13.59964 -13.32927 -13.24377 -13.05059 -13.00782 -12.79624 -12.71699 -12.54227 -12.43805 -12.39589 -12.31208 -12.23307 -12.11219 -11.96059 -11.60243 -11.45289 -11.29968 -10.62874 -10.32989 -10.20731 -9.65365 -9.12995 -9.01357 -8.38884 -5.99848 0.31534 0.46746 1.31111 1.37469 1.46257 1.50260 1.88821 1.99019 2.25357 2.65519 2.87389 3.16192 3.17735 3.55251 3.88223 3.89689 3.95252 3.97999 4.04905 4.10467 4.14428 4.24910 4.29074 4.34555 4.41853 4.42408 4.53292 4.59111 4.62430 4.74994 4.79795 4.82892 4.84893 4.88973 4.93627 5.03837 5.14165 5.15538 5.25881 5.29828 5.35031 5.37379 5.46624 5.55214 5.59412 5.65584 5.88281 5.99274 6.04935 6.13683 6.45654 6.62498 6.91579 7.13224 7.42511 8.01742 8.79092 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020579 B = 0.002375 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.274454 B =11786.505859 C =11890.173917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.155 4.155 3 C 0.053 3.947 4 N -0.520 5.520 5 C 0.049 3.951 6 C 0.452 3.548 7 O -0.607 6.607 8 N -0.591 5.591 9 C -0.325 4.325 10 H 0.050 0.950 11 C -0.019 4.019 12 N -0.938 5.938 13 Si 0.967 3.033 14 H -0.256 1.256 15 H -0.277 1.277 16 H -0.227 1.227 17 C 0.068 3.932 18 H 0.102 0.898 19 C -0.146 4.146 20 C 0.518 3.482 21 O -0.539 6.539 22 N -0.655 5.655 23 C 0.131 3.869 24 C -0.156 4.156 25 C -0.122 4.122 26 C -0.138 4.138 27 C -0.106 4.106 28 C -0.117 4.117 29 C -0.114 4.114 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.129 0.871 38 H 0.092 0.908 39 H 0.390 0.610 40 H 0.278 0.722 41 H 0.092 0.908 42 H 0.047 0.953 43 H 0.097 0.903 44 H 0.426 0.574 45 H 0.120 0.880 46 H 0.128 0.872 47 H 0.144 0.856 48 H 0.152 0.848 49 H 0.089 0.911 50 H 0.082 0.918 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 -18.422 28.474 34.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.194 4.194 3 C -0.075 4.075 4 N -0.245 5.245 5 C -0.082 4.082 6 C 0.240 3.760 7 O -0.491 6.491 8 N -0.233 5.233 9 C -0.454 4.454 10 H 0.069 0.931 11 C -0.217 4.217 12 N -0.579 5.579 13 Si 0.786 3.214 14 H -0.180 1.180 15 H -0.202 1.202 16 H -0.150 1.150 17 C -0.043 4.043 18 H 0.119 0.881 19 C -0.203 4.203 20 C 0.305 3.695 21 O -0.414 6.414 22 N -0.302 5.302 23 C 0.037 3.963 24 C -0.176 4.176 25 C -0.141 4.141 26 C -0.156 4.156 27 C -0.124 4.124 28 C -0.120 4.120 29 C -0.170 4.170 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.147 0.853 38 H 0.109 0.891 39 H 0.226 0.774 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.066 0.934 43 H 0.115 0.885 44 H 0.265 0.735 45 H 0.138 0.862 46 H 0.146 0.854 47 H 0.162 0.838 48 H 0.170 0.830 49 H 0.107 0.893 50 H 0.101 0.899 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.156 -16.361 28.378 32.827 hybrid contribution 0.015 -0.599 -1.107 1.259 sum 2.171 -16.960 27.271 32.188 Atomic orbital electron populations 1.21625 0.95008 1.02473 1.01080 1.22158 0.97472 0.97088 1.02662 1.22247 0.86678 0.96570 1.01981 1.61437 1.08241 1.54524 1.00254 1.21988 1.03509 0.95783 0.86888 1.20864 0.83089 0.88077 0.83999 1.90552 1.44536 1.29762 1.84212 1.41977 1.52422 1.23475 1.05453 1.18954 1.34828 1.05353 0.86296 0.93142 1.26166 0.98678 1.02780 0.94059 1.69820 1.47537 1.40097 1.00401 0.85344 0.79006 0.77212 0.79815 1.18036 1.20246 1.14961 1.21738 0.98113 0.97270 0.87208 0.88053 1.21951 0.90133 1.03171 1.05091 1.21020 0.76252 0.86795 0.85389 1.90695 1.48070 1.17440 1.85174 1.43383 1.62278 1.16091 1.08464 1.17799 0.98083 0.92779 0.87678 1.21539 1.02609 0.95032 0.98466 1.21266 0.98378 1.00673 0.93769 1.21426 0.99898 0.94267 1.00048 1.21227 0.99358 0.95197 0.96659 1.20008 0.98950 0.97736 0.95297 1.20811 1.04065 0.89304 1.02825 0.93044 0.94443 0.90463 0.91221 0.89941 0.92505 0.92364 0.85346 0.89093 0.77422 0.91237 0.88916 0.93394 0.88476 0.73468 0.86239 0.85375 0.83816 0.82996 0.89261 0.89874 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.91 71.98 0.71 -2.69 16 2 C -0.15 -3.71 5.23 30.59 0.16 -3.55 16 3 C 0.05 1.82 4.60 86.30 0.40 2.21 16 4 N -0.52 -16.48 4.05 -879.91 -3.57 -20.05 16 5 C 0.05 1.47 5.06 85.56 0.43 1.90 16 6 C 0.45 20.72 7.47 87.66 0.65 21.38 16 7 O -0.61 -35.01 13.91 -3.07 -0.04 -35.06 16 8 N -0.59 -27.86 5.09 -306.98 -1.56 -29.43 16 9 C -0.33 -19.27 10.16 84.04 0.85 -18.41 16 10 H 0.05 3.60 7.39 -2.91 -0.02 3.58 16 11 C -0.02 -1.05 5.50 84.93 0.47 -0.58 16 12 N -0.94 -57.29 13.96 21.66 0.30 -56.99 16 13 Si 0.97 38.43 27.74 68.60 1.90 40.33 16 14 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 15 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 16 H -0.23 -7.39 6.52 99.48 0.65 -6.74 16 17 C 0.07 1.43 2.00 44.17 0.09 1.52 16 18 H 0.10 1.36 6.48 -2.38 -0.02 1.34 16 19 C -0.15 -2.47 8.91 71.98 0.64 -1.83 16 20 C 0.52 13.00 5.83 87.66 0.51 13.51 16 21 O -0.54 -19.44 12.53 -3.03 -0.04 -19.48 16 22 N -0.66 -11.63 4.89 -303.51 -1.48 -13.12 16 23 C 0.13 2.77 6.39 38.15 0.24 3.02 16 24 C -0.16 -4.06 8.77 22.39 0.20 -3.86 16 25 C -0.12 -2.62 10.04 22.25 0.22 -2.40 16 26 C -0.14 -2.26 10.04 22.29 0.22 -2.03 16 27 C -0.11 -1.52 9.70 22.25 0.22 -1.30 16 28 C -0.12 -1.83 5.90 -19.74 -0.12 -1.95 16 29 C -0.11 -0.93 9.45 71.24 0.67 -0.26 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.62 6.24 -2.39 -0.01 1.60 16 34 H 0.08 1.47 6.61 -2.38 -0.02 1.45 16 35 H 0.06 2.12 6.29 -2.39 -0.02 2.10 16 36 H 0.06 2.58 5.82 -2.39 -0.01 2.57 16 37 H 0.13 3.05 5.76 -2.38 -0.01 3.04 16 38 H 0.09 2.12 6.09 -2.39 -0.01 2.11 16 39 H 0.39 14.88 5.76 -92.71 -0.53 14.34 16 40 H 0.28 15.52 8.31 -92.71 -0.77 14.74 16 41 H 0.09 1.25 6.16 -2.39 -0.01 1.24 16 42 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.43 4.01 7.58 -92.71 -0.70 3.31 16 45 H 0.12 3.81 5.71 -2.91 -0.02 3.80 16 46 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 47 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 48 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 49 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 50 H 0.08 0.52 8.09 -2.38 -0.02 0.50 16 51 H 0.07 0.51 7.06 -2.39 -0.02 0.50 16 Total: -1.00 -89.31 400.24 1.77 -87.54 By element: Atomic # 1 Polarization: 41.90 SS G_CDS: -0.32 Total: 41.57 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 6.58 Total: 4.67 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -6.31 Total: -119.58 kcal Atomic # 8 Polarization: -54.45 SS G_CDS: -0.08 Total: -54.53 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 1.90 Total: 40.33 kcal Total: -89.31 1.77 -87.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490082727.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.535 kcal (2) G-P(sol) polarization free energy of solvation -89.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds