Wall clock time and date at job start Wed Apr 1 2020 04:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47000 * 2 1 4 4 N 1.46499 * 109.47198 * 179.97438 * 3 2 1 5 5 C 1.39671 * 119.99620 * 180.28012 * 4 3 2 6 6 C 1.38912 * 120.08022 * 359.44118 * 5 4 3 7 7 C 1.38098 * 119.92495 * 179.77180 * 6 5 4 8 8 C 1.38285 * 120.08000 * 0.51307 * 7 6 5 9 9 C 1.50697 * 119.93186 * 179.76361 * 8 7 6 10 10 N 1.46498 * 109.47041 * 269.98023 * 9 8 7 11 11 C 1.34778 * 119.99357 * 179.97438 * 10 9 8 12 12 O 1.21583 * 120.00593 * 0.02562 * 11 10 9 13 13 N 1.34786 * 119.99631 * 179.97438 * 11 10 9 14 14 C 1.47023 * 125.64672 * 359.68950 * 13 11 10 15 15 C 1.54328 * 107.26245 * 178.85183 * 14 13 11 16 16 C 1.55153 * 103.02324 * 338.14075 * 15 14 13 17 17 O 1.42894 * 111.00981 * 277.23491 * 16 15 14 18 18 C 1.50706 * 111.03738 * 153.39406 * 16 15 14 19 19 H 1.07999 * 119.99730 * 6.33456 * 18 16 15 20 20 C 1.37875 * 119.99958 * 186.33067 * 18 16 15 21 21 N 1.31510 * 120.00054 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 119.99912 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46777 * 90.00310 * 22 20 18 24 24 H 1.48498 * 109.47625 * 210.00125 * 22 20 18 25 25 H 1.48497 * 109.47405 * 330.00749 * 22 20 18 26 26 C 1.47423 * 125.64628 * 180.02562 * 13 11 10 27 27 C 1.38293 * 120.14390 * 359.74118 * 8 7 6 28 28 C 1.38103 * 120.07544 * 0.02562 * 27 8 7 29 29 H 1.09007 * 109.47288 * 60.00489 * 1 2 3 30 30 H 1.09004 * 109.46774 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47672 * 299.99669 * 1 2 3 32 32 H 1.08995 * 109.47672 * 240.00331 * 2 1 3 33 33 H 1.09006 * 109.46819 * 119.99760 * 2 1 3 34 34 H 1.09009 * 109.46730 * 59.99606 * 3 2 1 35 35 H 1.08998 * 109.46846 * 300.00150 * 3 2 1 36 36 H 0.97001 * 119.99790 * 359.97438 * 4 3 2 37 37 H 1.08005 * 120.03088 * 0.02562 * 6 5 4 38 38 H 1.08005 * 119.96252 * 180.25688 * 7 6 5 39 39 H 1.09008 * 109.46566 * 29.97926 * 9 8 7 40 40 H 1.08997 * 109.47419 * 149.97260 * 9 8 7 41 41 H 0.96988 * 120.00429 * 359.97438 * 10 9 8 42 42 H 1.08992 * 109.88517 * 298.40173 * 14 13 11 43 43 H 1.09004 * 109.87808 * 59.56696 * 14 13 11 44 44 H 1.09003 * 110.85042 * 219.67413 * 15 14 13 45 45 H 1.08995 * 110.51771 * 96.45486 * 15 14 13 46 46 H 0.96699 * 114.00908 * 173.65055 * 17 16 15 47 47 H 0.96996 * 119.99824 * 179.97438 * 21 20 18 48 48 H 1.08998 * 110.36806 * 322.92999 * 26 13 11 49 49 H 1.08994 * 110.36628 * 85.14473 * 26 13 11 50 50 H 1.08001 * 119.95818 * 180.02562 * 27 8 7 51 51 H 1.07999 * 120.03434 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2032 2.6522 0.0066 6 6 3.5102 3.8562 0.0003 7 6 4.2038 5.0503 0.0111 8 6 5.5866 5.0486 0.0174 9 6 6.3401 6.3537 0.0238 10 7 6.5910 6.7794 -1.3554 11 6 7.2543 7.9278 -1.5959 12 8 7.6448 8.6101 -0.6685 13 7 7.4856 8.3192 -2.8648 14 6 7.0777 7.5898 -4.0744 15 6 7.5293 8.4281 -5.2889 16 6 7.6733 9.8543 -4.6952 17 8 6.4091 10.5186 -4.6455 18 6 8.6764 10.6658 -5.4740 19 1 9.1060 10.2670 -6.3810 20 6 9.0455 11.9173 -5.0285 21 7 8.5226 12.4027 -3.9238 22 14 10.2894 12.9228 -5.9935 23 1 9.5797 13.7607 -6.9933 24 1 11.0474 13.7976 -5.0633 25 1 11.2298 12.0096 -6.6912 26 6 8.1956 9.5462 -3.2695 27 6 6.2796 3.8519 0.0184 28 6 5.5923 2.6541 0.0125 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 1.8934 -0.5137 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6765 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9899 0.6025 0.0013 37 1 2.4302 3.8582 -0.0088 38 1 3.6656 5.9867 0.0104 39 1 5.7484 7.1123 0.5363 40 1 7.2899 6.2224 0.5420 41 1 6.2798 6.2350 -2.0952 42 1 7.5581 6.6118 -4.0972 43 1 5.9940 7.4732 -4.0891 44 1 6.7735 8.4118 -6.0742 45 1 8.4867 8.0690 -5.6662 46 1 6.4314 11.3734 -4.1940 47 1 8.7826 13.2830 -3.6102 48 1 7.9543 10.3652 -2.5918 49 1 9.2716 9.3736 -3.2867 50 1 7.3596 3.8541 0.0237 51 1 6.1342 1.7199 0.0137 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592017772.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:33 Heat of formation + Delta-G solvation = -58.564817 kcal Electronic energy + Delta-G solvation = -29779.679146 eV Core-core repulsion = 25678.292805 eV Total energy + Delta-G solvation = -4101.386341 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.95384 -39.35363 -37.45098 -36.82724 -34.56578 -34.14137 -33.09407 -32.17786 -31.08415 -30.41012 -29.47772 -27.71556 -26.67503 -25.23777 -24.20792 -23.24375 -22.40810 -21.66946 -20.98954 -19.59829 -19.38762 -17.71397 -17.41858 -16.96981 -16.45438 -16.01120 -15.76104 -15.25731 -15.18111 -14.93350 -14.56212 -14.36612 -14.13286 -13.85701 -13.73472 -13.55029 -13.40232 -13.31260 -12.98013 -12.76743 -12.58528 -12.45101 -12.23929 -12.00892 -11.63655 -11.61025 -11.47863 -11.37626 -11.30755 -11.03858 -10.99517 -10.76496 -10.54161 -10.42819 -10.27885 -10.13963 -9.51903 -9.30401 -9.07194 -8.69755 -8.64203 -8.29306 -7.63599 -7.59191 -6.22332 -4.32173 1.30600 1.33848 3.05728 3.22891 3.28682 3.32217 3.34485 3.80955 3.86400 4.30300 4.30524 4.42241 4.65035 4.67601 4.75118 4.80098 4.85724 5.04807 5.06054 5.09724 5.13394 5.27157 5.31432 5.44550 5.48383 5.52039 5.57254 5.68059 5.69422 5.73175 5.80082 5.91163 5.93723 6.08844 6.12322 6.18750 6.24103 6.57623 6.62823 6.64578 6.76907 6.89597 6.95754 7.05848 7.08153 7.30832 7.38474 7.39837 7.76243 7.79992 8.09491 8.64001 8.73151 9.24843 9.35660 9.43869 10.84669 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023422 B = 0.001765 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.170297 B =15863.138197 C =16343.152699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.123 3.877 4 N -0.751 5.751 5 C 0.218 3.782 6 C -0.199 4.199 7 C -0.050 4.050 8 C -0.160 4.160 9 C 0.188 3.812 10 N -0.748 5.748 11 C 0.715 3.285 12 O -0.599 6.599 13 N -0.629 5.629 14 C 0.106 3.894 15 C -0.116 4.116 16 C 0.248 3.752 17 O -0.583 6.583 18 C -0.538 4.538 19 H 0.066 0.934 20 C 0.071 3.929 21 N -0.891 5.891 22 Si 0.903 3.097 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C 0.115 3.885 27 C -0.051 4.051 28 C -0.198 4.198 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.398 0.602 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.393 0.607 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.381 0.619 47 H 0.270 0.730 48 H 0.085 0.915 49 H 0.056 0.944 50 H 0.123 0.877 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.329 -24.285 7.786 28.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C -0.001 4.001 4 N -0.381 5.381 5 C 0.115 3.885 6 C -0.222 4.222 7 C -0.070 4.070 8 C -0.163 4.163 9 C 0.064 3.936 10 N -0.405 5.405 11 C 0.417 3.583 12 O -0.478 6.478 13 N -0.366 5.366 14 C -0.017 4.017 15 C -0.154 4.154 16 C 0.207 3.793 17 O -0.391 6.391 18 C -0.576 4.576 19 H 0.084 0.916 20 C -0.132 4.132 21 N -0.530 5.530 22 Si 0.730 3.270 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.007 4.007 27 C -0.070 4.070 28 C -0.221 4.221 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.232 0.768 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.227 0.773 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.230 0.770 47 H 0.080 0.920 48 H 0.103 0.897 49 H 0.074 0.926 50 H 0.141 0.859 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.444 -24.128 8.360 28.405 hybrid contribution 0.865 0.395 -0.483 1.067 sum -11.579 -23.732 7.876 27.556 Atomic orbital electron populations 1.21685 0.94531 1.02241 1.02348 1.21699 0.96908 0.96027 1.02681 1.21379 0.80221 0.97229 1.01282 1.44665 1.05237 1.05325 1.82888 1.17846 0.91117 0.86202 0.93386 1.20604 0.99489 0.91053 1.11045 1.20883 0.93432 0.97549 0.95100 1.19703 0.93735 0.94550 1.08271 1.19826 0.98850 0.91883 0.83000 1.45236 1.62607 1.24527 1.08105 1.15549 0.79134 0.81053 0.82537 1.90878 1.58373 1.56071 1.42474 1.47935 1.59632 1.26331 1.02717 1.21906 0.98594 0.94882 0.86357 1.22584 1.01136 0.95970 0.95675 1.19641 0.82506 0.87870 0.89277 1.86096 1.33218 1.38137 1.81660 1.21459 1.24630 1.01469 1.10085 0.91578 1.25076 0.95945 0.97539 0.94646 1.69723 1.43500 1.18495 1.21259 0.86418 0.80976 0.79908 0.79666 1.20446 1.21030 1.19737 1.23100 0.94691 0.83795 0.99128 1.20841 0.99629 0.91200 0.95374 1.20544 0.91904 0.98476 1.11161 0.92287 0.92187 0.92339 0.91362 0.91421 0.92300 0.92217 0.76765 0.86242 0.85872 0.91420 0.91464 0.77334 0.93222 0.92751 0.90852 0.90493 0.76951 0.92024 0.89705 0.92595 0.85904 0.86329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.91 37.16 0.37 -0.18 16 2 C -0.14 -0.54 6.05 -26.73 -0.16 -0.71 16 3 C 0.12 0.69 4.91 -4.04 -0.02 0.67 16 4 N -0.75 -5.15 5.73 -58.63 -0.34 -5.48 16 5 C 0.22 2.00 6.65 -83.79 -0.56 1.44 16 6 C -0.20 -1.94 9.31 -39.38 -0.37 -2.30 16 7 C -0.05 -0.54 9.69 -39.62 -0.38 -0.92 16 8 C -0.16 -1.83 5.25 -104.59 -0.55 -2.38 16 9 C 0.19 2.63 5.79 -5.20 -0.03 2.59 16 10 N -0.75 -12.02 5.51 -66.41 -0.37 -12.38 16 11 C 0.72 15.16 8.49 -86.91 -0.74 14.42 16 12 O -0.60 -15.02 16.60 5.29 0.09 -14.93 16 13 N -0.63 -13.51 3.33 -176.22 -0.59 -14.10 16 14 C 0.11 1.92 6.15 -3.06 -0.02 1.90 16 15 C -0.12 -2.33 6.13 -24.90 -0.15 -2.48 16 16 C 0.25 6.08 0.87 -89.61 -0.08 6.00 16 17 O -0.58 -15.05 13.16 -35.23 -0.46 -15.51 16 18 C -0.54 -14.15 8.27 -34.44 -0.28 -14.44 16 19 H 0.07 1.70 7.79 -52.49 -0.41 1.29 16 20 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 21 N -0.89 -24.15 10.69 55.43 0.59 -23.56 16 22 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 C 0.11 2.84 5.38 -2.52 -0.01 2.83 16 27 C -0.05 -0.53 9.69 -39.61 -0.38 -0.91 16 28 C -0.20 -1.84 9.90 -39.38 -0.39 -2.23 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.34 7.96 -51.92 -0.41 -0.07 16 35 H 0.06 0.36 7.94 -51.93 -0.41 -0.05 16 36 H 0.40 2.13 8.49 -40.82 -0.35 1.78 16 37 H 0.12 0.99 6.73 -52.48 -0.35 0.64 16 38 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 39 H 0.07 0.99 8.08 -51.92 -0.42 0.57 16 40 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 41 H 0.39 5.57 7.45 -40.82 -0.30 5.27 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 46 H 0.38 10.11 7.56 45.56 0.34 10.46 16 47 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 48 H 0.08 2.37 7.33 -51.93 -0.38 1.99 16 49 H 0.06 1.43 8.03 -51.93 -0.42 1.02 16 50 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 51 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 414.72 15.07 6.25 6.25 Total: -1.00 -31.34 414.72 -11.43 -42.77 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -7.73 Total: 16.31 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -3.85 Total: 5.10 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.70 Total: -55.52 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.38 Total: -30.44 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.34 -11.43 -42.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592017772.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.795 kcal (2) G-P(sol) polarization free energy of solvation -31.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds