Wall clock time and date at job start Wed Apr 1 2020 04:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47000 * 2 1 4 4 N 1.46499 * 109.47198 * 179.97438 * 3 2 1 5 5 C 1.39671 * 119.99620 * 180.28012 * 4 3 2 6 6 C 1.38912 * 120.08022 * 359.44118 * 5 4 3 7 7 C 1.38098 * 119.92495 * 179.77180 * 6 5 4 8 8 C 1.38285 * 120.08000 * 0.51307 * 7 6 5 9 9 C 1.50697 * 119.93186 * 179.76361 * 8 7 6 10 10 N 1.46498 * 109.47041 * 269.98023 * 9 8 7 11 11 C 1.34778 * 119.99357 * 179.97438 * 10 9 8 12 12 O 1.21583 * 120.00593 * 0.02562 * 11 10 9 13 13 N 1.34786 * 119.99631 * 179.97438 * 11 10 9 14 14 C 1.47023 * 125.64672 * 359.68950 * 13 11 10 15 15 C 1.54328 * 107.26245 * 178.85183 * 14 13 11 16 16 C 1.55153 * 103.02324 * 338.14075 * 15 14 13 17 17 O 1.42894 * 111.00981 * 277.23491 * 16 15 14 18 18 C 1.50706 * 111.03738 * 153.39406 * 16 15 14 19 19 H 1.07999 * 119.99730 * 6.33456 * 18 16 15 20 20 C 1.37875 * 119.99958 * 186.33067 * 18 16 15 21 21 N 1.31510 * 120.00054 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 119.99912 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46777 * 90.00310 * 22 20 18 24 24 H 1.48498 * 109.47625 * 210.00125 * 22 20 18 25 25 H 1.48497 * 109.47405 * 330.00749 * 22 20 18 26 26 C 1.47423 * 125.64628 * 180.02562 * 13 11 10 27 27 C 1.38293 * 120.14390 * 359.74118 * 8 7 6 28 28 C 1.38103 * 120.07544 * 0.02562 * 27 8 7 29 29 H 1.09007 * 109.47288 * 60.00489 * 1 2 3 30 30 H 1.09004 * 109.46774 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47672 * 299.99669 * 1 2 3 32 32 H 1.08995 * 109.47672 * 240.00331 * 2 1 3 33 33 H 1.09006 * 109.46819 * 119.99760 * 2 1 3 34 34 H 1.09009 * 109.46730 * 59.99606 * 3 2 1 35 35 H 1.08998 * 109.46846 * 300.00150 * 3 2 1 36 36 H 0.97001 * 119.99790 * 359.97438 * 4 3 2 37 37 H 1.08005 * 120.03088 * 0.02562 * 6 5 4 38 38 H 1.08005 * 119.96252 * 180.25688 * 7 6 5 39 39 H 1.09008 * 109.46566 * 29.97926 * 9 8 7 40 40 H 1.08997 * 109.47419 * 149.97260 * 9 8 7 41 41 H 0.96988 * 120.00429 * 359.97438 * 10 9 8 42 42 H 1.08992 * 109.88517 * 298.40173 * 14 13 11 43 43 H 1.09004 * 109.87808 * 59.56696 * 14 13 11 44 44 H 1.09003 * 110.85042 * 219.67413 * 15 14 13 45 45 H 1.08995 * 110.51771 * 96.45486 * 15 14 13 46 46 H 0.96699 * 114.00908 * 173.65055 * 17 16 15 47 47 H 0.96996 * 119.99824 * 179.97438 * 21 20 18 48 48 H 1.08998 * 110.36806 * 322.92999 * 26 13 11 49 49 H 1.08994 * 110.36628 * 85.14473 * 26 13 11 50 50 H 1.08001 * 119.95818 * 180.02562 * 27 8 7 51 51 H 1.07999 * 120.03434 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2032 2.6522 0.0066 6 6 3.5102 3.8562 0.0003 7 6 4.2038 5.0503 0.0111 8 6 5.5866 5.0486 0.0174 9 6 6.3401 6.3537 0.0238 10 7 6.5910 6.7794 -1.3554 11 6 7.2543 7.9278 -1.5959 12 8 7.6448 8.6101 -0.6685 13 7 7.4856 8.3192 -2.8648 14 6 7.0777 7.5898 -4.0744 15 6 7.5293 8.4281 -5.2889 16 6 7.6733 9.8543 -4.6952 17 8 6.4091 10.5186 -4.6455 18 6 8.6764 10.6658 -5.4740 19 1 9.1060 10.2670 -6.3810 20 6 9.0455 11.9173 -5.0285 21 7 8.5226 12.4027 -3.9238 22 14 10.2894 12.9228 -5.9935 23 1 9.5797 13.7607 -6.9933 24 1 11.0474 13.7976 -5.0633 25 1 11.2298 12.0096 -6.6912 26 6 8.1956 9.5462 -3.2695 27 6 6.2796 3.8519 0.0184 28 6 5.5923 2.6541 0.0125 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 1.8934 -0.5137 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6765 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9899 0.6025 0.0013 37 1 2.4302 3.8582 -0.0088 38 1 3.6656 5.9867 0.0104 39 1 5.7484 7.1123 0.5363 40 1 7.2899 6.2224 0.5420 41 1 6.2798 6.2350 -2.0952 42 1 7.5581 6.6118 -4.0972 43 1 5.9940 7.4732 -4.0891 44 1 6.7735 8.4118 -6.0742 45 1 8.4867 8.0690 -5.6662 46 1 6.4314 11.3734 -4.1940 47 1 8.7826 13.2830 -3.6102 48 1 7.9543 10.3652 -2.5918 49 1 9.2716 9.3736 -3.2867 50 1 7.3596 3.8541 0.0237 51 1 6.1342 1.7199 0.0137 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592017772.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:31 Heat of formation + Delta-G solvation = -79.885323 kcal Electronic energy + Delta-G solvation = -29780.603673 eV Core-core repulsion = 25678.292805 eV Total energy + Delta-G solvation = -4102.310868 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.27792 -40.45227 -39.09538 -37.59849 -36.01181 -35.66561 -34.21384 -33.85886 -31.90757 -31.82184 -30.58812 -29.47526 -27.61327 -26.67876 -25.37638 -24.04865 -23.81719 -22.18539 -21.79358 -21.43846 -20.95715 -19.30107 -18.85002 -18.16896 -17.37209 -17.13298 -16.82934 -16.75482 -16.39365 -16.34957 -16.01971 -15.50256 -15.33938 -14.94526 -14.74574 -14.62917 -14.58187 -14.31513 -14.26393 -13.78253 -13.72837 -13.59351 -13.46621 -13.21355 -13.17882 -12.82704 -12.80728 -12.51293 -12.31261 -12.25009 -12.20847 -12.07191 -11.98048 -11.81886 -11.77115 -11.36406 -11.17839 -10.86513 -10.64503 -10.30653 -10.16189 -9.82517 -9.29414 -8.31445 -8.22152 -6.39867 0.51538 0.55519 1.43515 1.45336 1.55279 1.81688 2.18923 2.40173 2.50929 2.90696 3.03813 3.28250 3.81955 3.85434 3.91630 3.97911 4.09456 4.11129 4.14908 4.21200 4.33058 4.36116 4.40921 4.54500 4.63129 4.66420 4.70343 4.74313 4.78956 4.80055 4.83618 4.95021 5.08856 5.12492 5.15152 5.18165 5.25490 5.32023 5.36338 5.39450 5.40382 5.46728 5.49404 5.52685 5.78001 5.80651 5.91551 6.07752 6.22749 6.41814 6.67708 6.85595 7.10337 7.29676 7.37010 7.60858 8.82985 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023422 B = 0.001765 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.170297 B =15863.138197 C =16343.152699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C 0.121 3.879 4 N -0.743 5.743 5 C 0.219 3.781 6 C -0.207 4.207 7 C -0.056 4.056 8 C -0.173 4.173 9 C 0.191 3.809 10 N -0.725 5.725 11 C 0.709 3.291 12 O -0.646 6.646 13 N -0.635 5.635 14 C 0.108 3.892 15 C -0.110 4.110 16 C 0.231 3.769 17 O -0.587 6.587 18 C -0.557 4.557 19 H 0.070 0.930 20 C 0.026 3.974 21 N -0.916 5.916 22 Si 0.965 3.035 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.264 1.264 26 C 0.130 3.870 27 C -0.053 4.053 28 C -0.200 4.200 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.407 0.593 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.406 0.594 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.372 0.628 47 H 0.269 0.731 48 H 0.042 0.958 49 H 0.038 0.962 50 H 0.129 0.871 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.956 -27.219 6.818 30.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.003 4.003 4 N -0.373 5.373 5 C 0.114 3.886 6 C -0.229 4.229 7 C -0.075 4.075 8 C -0.176 4.176 9 C 0.068 3.932 10 N -0.381 5.381 11 C 0.411 3.589 12 O -0.529 6.529 13 N -0.372 5.372 14 C -0.014 4.014 15 C -0.148 4.148 16 C 0.191 3.809 17 O -0.394 6.394 18 C -0.595 4.595 19 H 0.088 0.912 20 C -0.175 4.175 21 N -0.555 5.555 22 Si 0.790 3.210 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.189 1.189 26 C 0.006 3.994 27 C -0.073 4.073 28 C -0.223 4.223 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.243 0.757 37 H 0.149 0.851 38 H 0.141 0.859 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.242 0.758 42 H 0.106 0.894 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.221 0.779 47 H 0.078 0.922 48 H 0.061 0.939 49 H 0.057 0.943 50 H 0.147 0.853 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.116 -27.157 7.364 31.044 hybrid contribution 0.981 1.210 -0.138 1.564 sum -12.135 -25.947 7.225 29.541 Atomic orbital electron populations 1.21692 0.94240 1.02608 1.02309 1.21645 0.97061 0.94903 1.03021 1.21468 0.79430 0.98333 1.01084 1.44754 1.05819 1.05008 1.81719 1.17995 0.91382 0.86837 0.92371 1.20738 1.00159 0.90912 1.11133 1.20934 0.93221 0.98132 0.95216 1.19441 0.93849 0.93486 1.10782 1.19861 0.98804 0.93046 0.81481 1.45123 1.60733 1.22658 1.09618 1.15784 0.79338 0.81936 0.81838 1.90839 1.60330 1.57834 1.43891 1.47890 1.59540 1.25745 1.03987 1.22091 0.99951 0.95571 0.83781 1.22589 1.02423 0.93056 0.96685 1.19884 0.81809 0.89981 0.89245 1.86088 1.34122 1.37739 1.81495 1.21806 1.25187 1.02076 1.10404 0.91201 1.25843 0.97602 0.98674 0.95410 1.69854 1.44539 1.18629 1.22459 0.85453 0.78854 0.78418 0.78286 1.20020 1.21237 1.18851 1.22633 0.93945 0.84103 0.98677 1.20943 1.00069 0.91161 0.95083 1.20748 0.92071 0.98865 1.10597 0.92411 0.91635 0.92336 0.91065 0.91004 0.92418 0.92479 0.75732 0.85097 0.85903 0.92586 0.92009 0.75806 0.89388 0.91136 0.89608 0.89254 0.77929 0.92214 0.93899 0.94349 0.85278 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 71.98 0.71 -0.10 16 2 C -0.13 -0.74 6.05 30.59 0.19 -0.56 16 3 C 0.12 1.09 4.91 86.38 0.42 1.52 16 4 N -0.74 -8.26 5.73 -339.40 -1.95 -10.20 16 5 C 0.22 3.51 6.65 38.22 0.25 3.76 16 6 C -0.21 -3.65 9.31 22.40 0.21 -3.44 16 7 C -0.06 -1.14 9.69 22.25 0.22 -0.92 16 8 C -0.17 -3.79 5.25 -19.84 -0.10 -3.89 16 9 C 0.19 5.33 5.79 85.63 0.50 5.83 16 10 N -0.72 -22.81 5.51 -482.29 -2.66 -25.46 16 11 C 0.71 30.35 8.49 179.05 1.52 31.87 16 12 O -0.65 -33.62 16.60 -3.98 -0.07 -33.69 16 13 N -0.64 -27.23 3.33 -829.71 -2.76 -29.99 16 14 C 0.11 3.65 6.15 86.73 0.53 4.18 16 15 C -0.11 -4.21 6.13 31.78 0.19 -4.02 16 16 C 0.23 11.41 0.87 -10.14 -0.01 11.40 16 17 O -0.59 -30.77 13.16 -148.98 -1.96 -32.73 16 18 C -0.56 -29.37 8.27 25.60 0.21 -29.16 16 19 H 0.07 3.54 7.79 -2.91 -0.02 3.52 16 20 C 0.03 1.36 5.29 84.65 0.45 1.81 16 21 N -0.92 -51.14 10.69 21.45 0.23 -50.91 16 22 Si 0.96 42.35 29.54 68.60 2.03 44.38 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 25 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 26 C 0.13 6.64 5.38 86.86 0.47 7.11 16 27 C -0.05 -1.01 9.69 22.25 0.22 -0.79 16 28 C -0.20 -3.22 9.90 22.40 0.22 -2.99 16 29 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 30 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16 31 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 34 H 0.06 0.56 7.96 -2.38 -0.02 0.54 16 35 H 0.06 0.57 7.94 -2.39 -0.02 0.55 16 36 H 0.41 3.17 8.49 -92.71 -0.79 2.38 16 37 H 0.13 1.94 6.73 -2.91 -0.02 1.92 16 38 H 0.12 2.43 8.06 -2.91 -0.02 2.40 16 39 H 0.06 1.69 8.08 -2.38 -0.02 1.67 16 40 H 0.06 1.79 8.08 -2.39 -0.02 1.77 16 41 H 0.41 10.71 7.45 -92.72 -0.69 10.02 16 42 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 45 H 0.09 3.18 8.03 -2.39 -0.02 3.16 16 46 H 0.37 20.53 7.56 -74.06 -0.56 19.97 16 47 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 48 H 0.04 2.52 7.33 -2.39 -0.02 2.50 16 49 H 0.04 2.04 8.03 -2.39 -0.02 2.02 16 50 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 51 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -69.35 414.72 -2.02 -71.38 By element: Atomic # 1 Polarization: 46.70 SS G_CDS: -1.09 Total: 45.62 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: 6.20 Total: 21.61 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -7.13 Total: -116.56 kcal Atomic # 8 Polarization: -64.39 SS G_CDS: -2.03 Total: -66.42 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -69.35 -2.02 -71.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592017772.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.510 kcal (2) G-P(sol) polarization free energy of solvation -69.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds