Wall clock time and date at job start Wed Apr 1 2020 04:22:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53004 * 109.47000 * 2 1
4 4 N 1.46499 * 109.47198 * 179.97438 * 3 2 1
5 5 C 1.39671 * 119.99620 * 180.28012 * 4 3 2
6 6 C 1.38912 * 120.08022 * 359.44118 * 5 4 3
7 7 C 1.38098 * 119.92495 * 179.77180 * 6 5 4
8 8 C 1.38285 * 120.08000 * 0.51307 * 7 6 5
9 9 C 1.50697 * 119.93186 * 179.76361 * 8 7 6
10 10 N 1.46498 * 109.47041 * 269.98023 * 9 8 7
11 11 C 1.34778 * 119.99357 * 179.97438 * 10 9 8
12 12 O 1.21583 * 120.00593 * 0.02562 * 11 10 9
13 13 N 1.34786 * 119.99631 * 179.97438 * 11 10 9
14 14 C 1.47023 * 125.64672 * 359.68950 * 13 11 10
15 15 C 1.54328 * 107.26245 * 178.85183 * 14 13 11
16 16 C 1.55153 * 103.02324 * 338.14075 * 15 14 13
17 17 O 1.42894 * 111.00981 * 277.23491 * 16 15 14
18 18 C 1.50706 * 111.03738 * 153.39406 * 16 15 14
19 19 H 1.07999 * 119.99730 * 6.33456 * 18 16 15
20 20 C 1.37875 * 119.99958 * 186.33067 * 18 16 15
21 21 N 1.31510 * 120.00054 * 0.02562 * 20 18 16
22 22 Si 1.86801 * 119.99912 * 179.97438 * 20 18 16
23 23 H 1.48502 * 109.46777 * 90.00310 * 22 20 18
24 24 H 1.48498 * 109.47625 * 210.00125 * 22 20 18
25 25 H 1.48497 * 109.47405 * 330.00749 * 22 20 18
26 26 C 1.47423 * 125.64628 * 180.02562 * 13 11 10
27 27 C 1.38293 * 120.14390 * 359.74118 * 8 7 6
28 28 C 1.38103 * 120.07544 * 0.02562 * 27 8 7
29 29 H 1.09007 * 109.47288 * 60.00489 * 1 2 3
30 30 H 1.09004 * 109.46774 * 179.97438 * 1 2 3
31 31 H 1.08995 * 109.47672 * 299.99669 * 1 2 3
32 32 H 1.08995 * 109.47672 * 240.00331 * 2 1 3
33 33 H 1.09006 * 109.46819 * 119.99760 * 2 1 3
34 34 H 1.09009 * 109.46730 * 59.99606 * 3 2 1
35 35 H 1.08998 * 109.46846 * 300.00150 * 3 2 1
36 36 H 0.97001 * 119.99790 * 359.97438 * 4 3 2
37 37 H 1.08005 * 120.03088 * 0.02562 * 6 5 4
38 38 H 1.08005 * 119.96252 * 180.25688 * 7 6 5
39 39 H 1.09008 * 109.46566 * 29.97926 * 9 8 7
40 40 H 1.08997 * 109.47419 * 149.97260 * 9 8 7
41 41 H 0.96988 * 120.00429 * 359.97438 * 10 9 8
42 42 H 1.08992 * 109.88517 * 298.40173 * 14 13 11
43 43 H 1.09004 * 109.87808 * 59.56696 * 14 13 11
44 44 H 1.09003 * 110.85042 * 219.67413 * 15 14 13
45 45 H 1.08995 * 110.51771 * 96.45486 * 15 14 13
46 46 H 0.96699 * 114.00908 * 173.65055 * 17 16 15
47 47 H 0.96996 * 119.99824 * 179.97438 * 21 20 18
48 48 H 1.08998 * 110.36806 * 322.92999 * 26 13 11
49 49 H 1.08994 * 110.36628 * 85.14473 * 26 13 11
50 50 H 1.08001 * 119.95818 * 180.02562 * 27 8 7
51 51 H 1.07999 * 120.03434 * 180.02562 * 28 27 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5049 1.4426 0.0006
5 6 4.2032 2.6522 0.0066
6 6 3.5102 3.8562 0.0003
7 6 4.2038 5.0503 0.0111
8 6 5.5866 5.0486 0.0174
9 6 6.3401 6.3537 0.0238
10 7 6.5910 6.7794 -1.3554
11 6 7.2543 7.9278 -1.5959
12 8 7.6448 8.6101 -0.6685
13 7 7.4856 8.3192 -2.8648
14 6 7.0777 7.5898 -4.0744
15 6 7.5293 8.4281 -5.2889
16 6 7.6733 9.8543 -4.6952
17 8 6.4091 10.5186 -4.6455
18 6 8.6764 10.6658 -5.4740
19 1 9.1060 10.2670 -6.3810
20 6 9.0455 11.9173 -5.0285
21 7 8.5226 12.4027 -3.9238
22 14 10.2894 12.9228 -5.9935
23 1 9.5797 13.7607 -6.9933
24 1 11.0474 13.7976 -5.0633
25 1 11.2298 12.0096 -6.6912
26 6 8.1956 9.5462 -3.2695
27 6 6.2796 3.8519 0.0184
28 6 5.5923 2.6541 0.0125
29 1 -0.3634 0.5138 -0.8901
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5137 0.8899
32 1 1.8934 -0.5137 -0.8899
33 1 1.8933 -0.5138 0.8901
34 1 1.6765 1.9564 0.8900
35 1 1.6766 1.9563 -0.8900
36 1 3.9899 0.6025 0.0013
37 1 2.4302 3.8582 -0.0088
38 1 3.6656 5.9867 0.0104
39 1 5.7484 7.1123 0.5363
40 1 7.2899 6.2224 0.5420
41 1 6.2798 6.2350 -2.0952
42 1 7.5581 6.6118 -4.0972
43 1 5.9940 7.4732 -4.0891
44 1 6.7735 8.4118 -6.0742
45 1 8.4867 8.0690 -5.6662
46 1 6.4314 11.3734 -4.1940
47 1 8.7826 13.2830 -3.6102
48 1 7.9543 10.3652 -2.5918
49 1 9.2716 9.3736 -3.2867
50 1 7.3596 3.8541 0.0237
51 1 6.1342 1.7199 0.0137
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000592017772.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:22:31
Heat of formation + Delta-G solvation = -79.885323 kcal
Electronic energy + Delta-G solvation = -29780.603673 eV
Core-core repulsion = 25678.292805 eV
Total energy + Delta-G solvation = -4102.310868 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.16 seconds
Orbital eigenvalues (eV)
-41.27792 -40.45227 -39.09538 -37.59849 -36.01181 -35.66561 -34.21384 -33.85886
-31.90757 -31.82184 -30.58812 -29.47526 -27.61327 -26.67876 -25.37638 -24.04865
-23.81719 -22.18539 -21.79358 -21.43846 -20.95715 -19.30107 -18.85002 -18.16896
-17.37209 -17.13298 -16.82934 -16.75482 -16.39365 -16.34957 -16.01971 -15.50256
-15.33938 -14.94526 -14.74574 -14.62917 -14.58187 -14.31513 -14.26393 -13.78253
-13.72837 -13.59351 -13.46621 -13.21355 -13.17882 -12.82704 -12.80728 -12.51293
-12.31261 -12.25009 -12.20847 -12.07191 -11.98048 -11.81886 -11.77115 -11.36406
-11.17839 -10.86513 -10.64503 -10.30653 -10.16189 -9.82517 -9.29414 -8.31445
-8.22152 -6.39867 0.51538 0.55519 1.43515 1.45336 1.55279 1.81688
2.18923 2.40173 2.50929 2.90696 3.03813 3.28250 3.81955 3.85434
3.91630 3.97911 4.09456 4.11129 4.14908 4.21200 4.33058 4.36116
4.40921 4.54500 4.63129 4.66420 4.70343 4.74313 4.78956 4.80055
4.83618 4.95021 5.08856 5.12492 5.15152 5.18165 5.25490 5.32023
5.36338 5.39450 5.40382 5.46728 5.49404 5.52685 5.78001 5.80651
5.91551 6.07752 6.22749 6.41814 6.67708 6.85595 7.10337 7.29676
7.37010 7.60858 8.82985
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.023422 B = 0.001765 C = 0.001713
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1195.170297 B =15863.138197 C =16343.152699
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.128 4.128
3 C 0.121 3.879
4 N -0.743 5.743
5 C 0.219 3.781
6 C -0.207 4.207
7 C -0.056 4.056
8 C -0.173 4.173
9 C 0.191 3.809
10 N -0.725 5.725
11 C 0.709 3.291
12 O -0.646 6.646
13 N -0.635 5.635
14 C 0.108 3.892
15 C -0.110 4.110
16 C 0.231 3.769
17 O -0.587 6.587
18 C -0.557 4.557
19 H 0.070 0.930
20 C 0.026 3.974
21 N -0.916 5.916
22 Si 0.965 3.035
23 H -0.275 1.275
24 H -0.287 1.287
25 H -0.264 1.264
26 C 0.130 3.870
27 C -0.053 4.053
28 C -0.200 4.200
29 H 0.057 0.943
30 H 0.065 0.935
31 H 0.058 0.942
32 H 0.071 0.929
33 H 0.071 0.929
34 H 0.058 0.942
35 H 0.057 0.943
36 H 0.407 0.593
37 H 0.131 0.869
38 H 0.123 0.877
39 H 0.056 0.944
40 H 0.062 0.938
41 H 0.406 0.594
42 H 0.088 0.912
43 H 0.070 0.930
44 H 0.085 0.915
45 H 0.089 0.911
46 H 0.372 0.628
47 H 0.269 0.731
48 H 0.042 0.958
49 H 0.038 0.962
50 H 0.129 0.871
51 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.956 -27.219 6.818 30.906
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.166 4.166
3 C -0.003 4.003
4 N -0.373 5.373
5 C 0.114 3.886
6 C -0.229 4.229
7 C -0.075 4.075
8 C -0.176 4.176
9 C 0.068 3.932
10 N -0.381 5.381
11 C 0.411 3.589
12 O -0.529 6.529
13 N -0.372 5.372
14 C -0.014 4.014
15 C -0.148 4.148
16 C 0.191 3.809
17 O -0.394 6.394
18 C -0.595 4.595
19 H 0.088 0.912
20 C -0.175 4.175
21 N -0.555 5.555
22 Si 0.790 3.210
23 H -0.200 1.200
24 H -0.212 1.212
25 H -0.189 1.189
26 C 0.006 3.994
27 C -0.073 4.073
28 C -0.223 4.223
29 H 0.076 0.924
30 H 0.084 0.916
31 H 0.077 0.923
32 H 0.089 0.911
33 H 0.090 0.910
34 H 0.076 0.924
35 H 0.075 0.925
36 H 0.243 0.757
37 H 0.149 0.851
38 H 0.141 0.859
39 H 0.074 0.926
40 H 0.080 0.920
41 H 0.242 0.758
42 H 0.106 0.894
43 H 0.089 0.911
44 H 0.104 0.896
45 H 0.107 0.893
46 H 0.221 0.779
47 H 0.078 0.922
48 H 0.061 0.939
49 H 0.057 0.943
50 H 0.147 0.853
51 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -13.116 -27.157 7.364 31.044
hybrid contribution 0.981 1.210 -0.138 1.564
sum -12.135 -25.947 7.225 29.541
Atomic orbital electron populations
1.21692 0.94240 1.02608 1.02309 1.21645 0.97061 0.94903 1.03021
1.21468 0.79430 0.98333 1.01084 1.44754 1.05819 1.05008 1.81719
1.17995 0.91382 0.86837 0.92371 1.20738 1.00159 0.90912 1.11133
1.20934 0.93221 0.98132 0.95216 1.19441 0.93849 0.93486 1.10782
1.19861 0.98804 0.93046 0.81481 1.45123 1.60733 1.22658 1.09618
1.15784 0.79338 0.81936 0.81838 1.90839 1.60330 1.57834 1.43891
1.47890 1.59540 1.25745 1.03987 1.22091 0.99951 0.95571 0.83781
1.22589 1.02423 0.93056 0.96685 1.19884 0.81809 0.89981 0.89245
1.86088 1.34122 1.37739 1.81495 1.21806 1.25187 1.02076 1.10404
0.91201 1.25843 0.97602 0.98674 0.95410 1.69854 1.44539 1.18629
1.22459 0.85453 0.78854 0.78418 0.78286 1.20020 1.21237 1.18851
1.22633 0.93945 0.84103 0.98677 1.20943 1.00069 0.91161 0.95083
1.20748 0.92071 0.98865 1.10597 0.92411 0.91635 0.92336 0.91065
0.91004 0.92418 0.92479 0.75732 0.85097 0.85903 0.92586 0.92009
0.75806 0.89388 0.91136 0.89608 0.89254 0.77929 0.92214 0.93899
0.94349 0.85278 0.84299
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.81 9.91 71.98 0.71 -0.10 16
2 C -0.13 -0.74 6.05 30.59 0.19 -0.56 16
3 C 0.12 1.09 4.91 86.38 0.42 1.52 16
4 N -0.74 -8.26 5.73 -339.40 -1.95 -10.20 16
5 C 0.22 3.51 6.65 38.22 0.25 3.76 16
6 C -0.21 -3.65 9.31 22.40 0.21 -3.44 16
7 C -0.06 -1.14 9.69 22.25 0.22 -0.92 16
8 C -0.17 -3.79 5.25 -19.84 -0.10 -3.89 16
9 C 0.19 5.33 5.79 85.63 0.50 5.83 16
10 N -0.72 -22.81 5.51 -482.29 -2.66 -25.46 16
11 C 0.71 30.35 8.49 179.05 1.52 31.87 16
12 O -0.65 -33.62 16.60 -3.98 -0.07 -33.69 16
13 N -0.64 -27.23 3.33 -829.71 -2.76 -29.99 16
14 C 0.11 3.65 6.15 86.73 0.53 4.18 16
15 C -0.11 -4.21 6.13 31.78 0.19 -4.02 16
16 C 0.23 11.41 0.87 -10.14 -0.01 11.40 16
17 O -0.59 -30.77 13.16 -148.98 -1.96 -32.73 16
18 C -0.56 -29.37 8.27 25.60 0.21 -29.16 16
19 H 0.07 3.54 7.79 -2.91 -0.02 3.52 16
20 C 0.03 1.36 5.29 84.65 0.45 1.81 16
21 N -0.92 -51.14 10.69 21.45 0.23 -50.91 16
22 Si 0.96 42.35 29.54 68.60 2.03 44.38 16
23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16
24 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16
25 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16
26 C 0.13 6.64 5.38 86.86 0.47 7.11 16
27 C -0.05 -1.01 9.69 22.25 0.22 -0.79 16
28 C -0.20 -3.22 9.90 22.40 0.22 -2.99 16
29 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16
30 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16
31 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16
32 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16
33 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16
34 H 0.06 0.56 7.96 -2.38 -0.02 0.54 16
35 H 0.06 0.57 7.94 -2.39 -0.02 0.55 16
36 H 0.41 3.17 8.49 -92.71 -0.79 2.38 16
37 H 0.13 1.94 6.73 -2.91 -0.02 1.92 16
38 H 0.12 2.43 8.06 -2.91 -0.02 2.40 16
39 H 0.06 1.69 8.08 -2.38 -0.02 1.67 16
40 H 0.06 1.79 8.08 -2.39 -0.02 1.77 16
41 H 0.41 10.71 7.45 -92.72 -0.69 10.02 16
42 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16
43 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16
44 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16
45 H 0.09 3.18 8.03 -2.39 -0.02 3.16 16
46 H 0.37 20.53 7.56 -74.06 -0.56 19.97 16
47 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16
48 H 0.04 2.52 7.33 -2.39 -0.02 2.50 16
49 H 0.04 2.04 8.03 -2.39 -0.02 2.02 16
50 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16
51 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16
Total: -1.00 -69.35 414.72 -2.02 -71.38
By element:
Atomic # 1 Polarization: 46.70 SS G_CDS: -1.09 Total: 45.62 kcal
Atomic # 6 Polarization: 15.41 SS G_CDS: 6.20 Total: 21.61 kcal
Atomic # 7 Polarization: -109.43 SS G_CDS: -7.13 Total: -116.56 kcal
Atomic # 8 Polarization: -64.39 SS G_CDS: -2.03 Total: -66.42 kcal
Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal
Total: -69.35 -2.02 -71.38 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592017772.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.510 kcal
(2) G-P(sol) polarization free energy of solvation -69.352 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.862 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.024 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.376 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.885 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.17 seconds