Wall clock time and date at job start Wed Apr 1 2020 04:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.47211 * 2 1 4 4 N 1.46496 * 109.47116 * 180.02562 * 3 2 1 5 5 C 1.46497 * 119.99873 * 269.99920 * 4 3 2 6 6 C 1.53008 * 109.47276 * 270.00112 * 5 4 3 7 7 C 1.38455 * 120.00097 * 90.00376 * 4 3 2 8 8 C 1.39398 * 119.54038 * 185.01496 * 7 4 3 9 9 C 1.36856 * 119.37555 * 179.69167 * 8 7 4 10 10 C 1.40347 * 118.49384 * 0.55091 * 9 8 7 11 11 C 1.47550 * 120.47338 * 179.72279 * 10 9 8 12 12 O 1.21591 * 120.00153 * 186.91702 * 11 10 9 13 13 N 1.34781 * 119.99967 * 6.92189 * 11 10 9 14 14 C 1.47024 * 125.64695 * 354.53511 * 13 11 10 15 15 C 1.54323 * 107.26686 * 180.79592 * 14 13 11 16 16 C 1.55153 * 102.94333 * 22.20103 * 15 14 13 17 17 O 1.42897 * 111.01010 * 82.56974 * 16 15 14 18 18 C 1.50702 * 111.00074 * 206.38527 * 16 15 14 19 19 H 1.07995 * 120.00393 * 359.97438 * 18 16 15 20 20 C 1.37878 * 119.99728 * 179.97438 * 18 16 15 21 21 N 1.31516 * 120.00253 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 119.99970 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47071 * 59.99845 * 22 20 18 24 24 H 1.48504 * 109.47426 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47288 * 300.00035 * 22 20 18 26 26 C 1.47426 * 125.64742 * 174.23820 * 13 11 10 27 27 C 1.39550 * 119.05291 * 359.45458 * 10 9 8 28 28 N 1.31681 * 120.51601 * 0.27616 * 27 10 9 29 29 H 1.09000 * 109.46999 * 299.99253 * 1 2 3 30 30 H 1.08996 * 109.47446 * 59.99801 * 1 2 3 31 31 H 1.09002 * 109.46797 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47483 * 240.00666 * 2 1 3 33 33 H 1.09001 * 109.47918 * 120.00257 * 2 1 3 34 34 H 1.09004 * 109.46353 * 59.99974 * 3 2 1 35 35 H 1.09001 * 109.46889 * 300.00886 * 3 2 1 36 36 H 1.08996 * 109.47523 * 30.00320 * 5 4 3 37 37 H 1.08997 * 109.47172 * 150.00624 * 5 4 3 38 38 H 1.09006 * 109.46407 * 60.00131 * 6 5 4 39 39 H 1.08992 * 109.47012 * 179.97438 * 6 5 4 40 40 H 1.08996 * 109.47014 * 300.00519 * 6 5 4 41 41 H 1.07995 * 120.31097 * 359.97438 * 8 7 4 42 42 H 1.08005 * 120.75095 * 180.28004 * 9 8 7 43 43 H 1.08992 * 109.88291 * 300.21889 * 14 13 11 44 44 H 1.09007 * 109.87650 * 61.22936 * 14 13 11 45 45 H 1.09007 * 110.71751 * 140.55927 * 15 14 13 46 46 H 1.08996 * 110.72117 * 263.82976 * 15 14 13 47 47 H 0.96693 * 114.00211 * 179.97438 * 17 16 15 48 48 H 0.97005 * 119.99935 * 179.97438 * 21 20 18 49 49 H 1.09009 * 110.36176 * 274.97161 * 26 13 11 50 50 H 1.08993 * 110.36570 * 37.28770 * 26 13 11 51 51 H 1.07999 * 119.74265 * 180.29662 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2380 1.4424 1.2678 6 6 4.4932 2.8849 1.7096 7 6 4.1968 1.4428 -1.2000 8 6 5.5867 1.3368 -1.1917 9 6 6.2666 1.3310 -2.3794 10 6 5.5338 1.4447 -3.5709 11 6 6.2229 1.4493 -4.8756 12 8 5.5964 1.6739 -5.8933 13 7 7.5468 1.2047 -4.9394 14 6 8.4426 1.0313 -3.7866 15 6 9.8627 0.7928 -4.3417 16 6 9.7874 1.4076 -5.7643 17 8 9.9836 2.8224 -5.7220 18 6 10.7829 0.7546 -6.6882 19 1 11.4257 -0.0317 -6.3208 20 6 10.8731 1.1609 -8.0026 21 7 10.0901 2.1181 -8.4503 22 14 12.1076 0.3520 -9.1477 23 1 11.8179 -1.1016 -9.2406 24 1 12.0059 0.9637 -10.4971 25 1 13.4799 0.5502 -8.6160 26 6 8.3352 1.0604 -6.1768 27 6 4.1437 1.5475 -3.5044 28 7 3.5279 1.5436 -2.3405 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5137 -0.8901 33 1 1.8935 -0.5138 0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6766 1.9564 -0.8899 36 1 3.6493 0.9284 2.0276 37 1 5.1904 0.9287 1.1370 38 1 3.5407 3.3986 1.8404 39 1 5.0381 2.8847 2.6535 40 1 5.0819 3.3988 0.9498 41 1 6.1216 1.2553 -0.2570 42 1 7.3431 1.2453 -2.3991 43 1 8.4316 1.9301 -3.1701 44 1 8.1241 0.1726 -3.1955 45 1 10.6057 1.3119 -3.7361 46 1 10.0825 -0.2735 -4.3935 47 1 9.9455 3.2508 -6.5880 48 1 10.1538 2.4042 -9.3750 49 1 8.2799 0.0357 -6.5445 50 1 7.9798 1.7566 -6.9363 51 1 3.5684 1.6307 -4.4146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592840639.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:20 Heat of formation + Delta-G solvation = -22.057647 kcal Electronic energy + Delta-G solvation = -31022.679479 eV Core-core repulsion = 26922.876208 eV Total energy + Delta-G solvation = -4099.803271 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.68115 -39.24526 -37.53916 -36.87461 -34.52210 -34.10566 -32.61925 -32.15024 -31.29337 -30.27187 -29.52895 -27.95854 -26.34892 -25.42077 -24.23507 -23.40531 -22.60463 -22.07465 -20.70030 -19.80631 -19.39055 -17.55583 -17.28605 -16.97569 -16.51325 -15.52355 -15.23351 -15.12087 -15.03804 -14.89520 -14.82555 -14.48525 -14.29059 -13.67384 -13.59178 -13.45950 -13.14139 -13.03191 -12.93671 -12.81918 -12.66057 -12.36016 -12.17632 -11.99335 -11.81578 -11.62500 -11.54299 -11.38370 -11.32057 -11.03135 -10.92719 -10.71935 -10.60073 -10.51113 -10.20224 -10.01715 -9.77455 -9.69137 -9.37025 -9.12478 -8.67899 -8.38977 -7.86659 -7.59003 -6.29314 -4.39274 1.06110 1.40164 2.66180 3.21358 3.27668 3.28892 3.33066 3.67929 4.13518 4.25618 4.34081 4.56954 4.69355 4.74191 4.86816 4.92334 4.94320 4.95753 5.00652 5.02664 5.11388 5.19997 5.21756 5.34110 5.39191 5.45216 5.47653 5.54913 5.56107 5.73102 5.73960 5.77868 5.84381 5.87644 5.95462 5.96725 6.05145 6.17487 6.24564 6.46542 6.51946 6.69455 6.77527 6.83377 7.00288 7.21462 7.25803 7.34238 7.73795 7.98118 8.07022 8.24804 8.63399 8.78730 9.30518 9.45766 10.77824 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022766 B = 0.002255 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.634202 B =12415.512884 C =13037.880674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.126 3.874 4 N -0.605 5.605 5 C 0.118 3.882 6 C -0.173 4.173 7 C 0.415 3.585 8 C -0.248 4.248 9 C -0.039 4.039 10 C -0.237 4.237 11 C 0.574 3.426 12 O -0.553 6.553 13 N -0.604 5.604 14 C 0.096 3.904 15 C -0.121 4.121 16 C 0.250 3.750 17 O -0.585 6.585 18 C -0.539 4.539 19 H 0.067 0.933 20 C 0.071 3.929 21 N -0.894 5.894 22 Si 0.905 3.095 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.093 3.907 27 C 0.206 3.794 28 N -0.547 5.547 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.134 0.866 42 H 0.170 0.830 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.387 0.613 48 H 0.272 0.728 49 H 0.061 0.939 50 H 0.084 0.916 51 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.503 -2.480 20.735 24.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C 0.003 3.997 4 N -0.316 5.316 5 C -0.005 4.005 6 C -0.232 4.232 7 C 0.180 3.820 8 C -0.272 4.272 9 C -0.064 4.064 10 C -0.245 4.245 11 C 0.363 3.637 12 O -0.433 6.433 13 N -0.335 5.335 14 C -0.027 4.027 15 C -0.159 4.159 16 C 0.209 3.791 17 O -0.395 6.395 18 C -0.577 4.577 19 H 0.085 0.915 20 C -0.132 4.132 21 N -0.533 5.533 22 Si 0.732 3.268 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.028 4.028 27 C 0.047 3.953 28 N -0.264 5.264 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.151 0.849 42 H 0.186 0.814 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.239 0.761 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.102 0.898 51 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -13.886 -2.283 20.874 25.175 hybrid contribution 1.428 -0.395 -1.221 1.920 sum -12.458 -2.678 19.654 23.423 Atomic orbital electron populations 1.21680 0.95255 1.01807 1.01872 1.21901 0.95984 0.97605 1.02246 1.21459 0.78646 0.96601 1.02960 1.46436 1.05444 1.77573 1.02181 1.21500 0.97367 0.97284 0.84333 1.22235 1.02232 0.97054 1.01660 1.18549 0.88319 0.88766 0.86330 1.21156 0.93101 1.13356 0.99592 1.22745 1.03096 0.89553 0.90966 1.20713 0.95622 1.13891 0.94225 1.17598 0.80808 0.77300 0.88013 1.90741 1.65297 1.50854 1.36405 1.48560 1.06387 1.68847 1.09730 1.22419 0.91703 0.99255 0.89300 1.22708 0.93645 1.01142 0.98420 1.19573 0.89414 0.80186 0.89919 1.86052 1.95135 1.21329 1.36983 1.21449 1.20528 1.20882 0.94862 0.91512 1.25088 0.95443 0.94603 0.98113 1.69561 1.38024 1.28435 1.17280 0.86443 0.81317 0.79581 0.79443 1.20017 1.21064 1.19995 1.23308 0.92931 1.01152 0.85444 1.22634 0.90736 0.87450 0.94519 1.67328 1.39742 1.22047 0.97235 0.92871 0.92324 0.92648 0.91551 0.92427 0.91378 0.89319 0.90383 0.90181 0.92433 0.91472 0.92069 0.84875 0.81375 0.91394 0.91945 0.90537 0.90302 0.76102 0.91772 0.92067 0.89754 0.81636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.14 -1.12 6.26 -26.73 -0.17 -1.29 16 3 C 0.13 1.09 5.46 -4.04 -0.02 1.06 16 4 N -0.60 -5.81 2.57 -173.87 -0.45 -6.25 16 5 C 0.12 0.80 5.96 -4.04 -0.02 0.77 16 6 C -0.17 -1.11 10.24 37.16 0.38 -0.73 16 7 C 0.41 5.23 7.36 -155.28 -1.14 4.08 16 8 C -0.25 -2.96 9.20 -39.65 -0.36 -3.33 16 9 C -0.04 -0.54 8.63 -39.29 -0.34 -0.88 16 10 C -0.24 -3.98 5.89 -104.82 -0.62 -4.59 16 11 C 0.57 11.91 7.80 -12.46 -0.10 11.81 16 12 O -0.55 -13.28 16.62 5.29 0.09 -13.19 16 13 N -0.60 -12.49 3.33 -173.12 -0.58 -13.06 16 14 C 0.10 1.62 4.87 -3.06 -0.01 1.61 16 15 C -0.12 -2.31 6.13 -24.90 -0.15 -2.46 16 16 C 0.25 5.95 0.89 -89.63 -0.08 5.87 16 17 O -0.58 -14.91 13.18 -35.23 -0.46 -15.37 16 18 C -0.54 -13.77 8.25 -34.44 -0.28 -14.05 16 19 H 0.07 1.66 7.76 -52.49 -0.41 1.25 16 20 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 21 N -0.89 -23.74 10.72 55.43 0.59 -23.14 16 22 Si 0.90 20.16 29.54 -169.99 -5.02 15.13 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 C 0.09 2.22 5.65 -2.53 -0.01 2.21 16 27 C 0.21 3.25 10.76 -17.13 -0.18 3.07 16 28 N -0.55 -7.87 9.04 -12.14 -0.11 -7.98 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 35 H 0.09 0.91 7.28 -51.93 -0.38 0.54 16 36 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 37 H 0.08 0.50 5.95 -51.93 -0.31 0.19 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.13 1.22 5.99 -52.49 -0.31 0.90 16 42 H 0.17 2.16 2.89 -54.28 -0.16 2.01 16 43 H 0.07 1.07 6.74 -51.93 -0.35 0.72 16 44 H 0.06 0.88 6.71 -51.93 -0.35 0.53 16 45 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 46 H 0.08 1.40 8.01 -51.93 -0.42 0.98 16 47 H 0.39 10.28 6.93 45.56 0.32 10.59 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.06 1.49 8.03 -51.92 -0.42 1.07 16 50 H 0.08 2.29 7.59 -51.93 -0.39 1.89 16 51 H 0.17 2.56 7.67 -52.49 -0.40 2.16 16 LS Contribution 404.16 15.07 6.09 6.09 Total: -1.00 -30.34 404.16 -10.05 -40.40 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -7.36 Total: 13.13 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -2.85 Total: 4.26 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.54 Total: -50.44 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.38 Total: -28.56 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.34 -10.05 -40.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840639.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.337 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds