Wall clock time and date at job start Wed Apr 1 2020 04:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.47211 * 2 1 4 4 N 1.46496 * 109.47116 * 180.02562 * 3 2 1 5 5 C 1.46497 * 119.99873 * 269.99920 * 4 3 2 6 6 C 1.53008 * 109.47276 * 270.00112 * 5 4 3 7 7 C 1.38455 * 120.00097 * 90.00376 * 4 3 2 8 8 C 1.39398 * 119.54038 * 185.01496 * 7 4 3 9 9 C 1.36856 * 119.37555 * 179.69167 * 8 7 4 10 10 C 1.40347 * 118.49384 * 0.55091 * 9 8 7 11 11 C 1.47550 * 120.47338 * 179.72279 * 10 9 8 12 12 O 1.21591 * 120.00153 * 186.91702 * 11 10 9 13 13 N 1.34781 * 119.99967 * 6.92189 * 11 10 9 14 14 C 1.47024 * 125.64695 * 354.53511 * 13 11 10 15 15 C 1.54323 * 107.26686 * 180.79592 * 14 13 11 16 16 C 1.55153 * 102.94333 * 22.20103 * 15 14 13 17 17 O 1.42897 * 111.01010 * 82.56974 * 16 15 14 18 18 C 1.50702 * 111.00074 * 206.38527 * 16 15 14 19 19 H 1.07995 * 120.00393 * 359.97438 * 18 16 15 20 20 C 1.37878 * 119.99728 * 179.97438 * 18 16 15 21 21 N 1.31516 * 120.00253 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 119.99970 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47071 * 59.99845 * 22 20 18 24 24 H 1.48504 * 109.47426 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47288 * 300.00035 * 22 20 18 26 26 C 1.47426 * 125.64742 * 174.23820 * 13 11 10 27 27 C 1.39550 * 119.05291 * 359.45458 * 10 9 8 28 28 N 1.31681 * 120.51601 * 0.27616 * 27 10 9 29 29 H 1.09000 * 109.46999 * 299.99253 * 1 2 3 30 30 H 1.08996 * 109.47446 * 59.99801 * 1 2 3 31 31 H 1.09002 * 109.46797 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47483 * 240.00666 * 2 1 3 33 33 H 1.09001 * 109.47918 * 120.00257 * 2 1 3 34 34 H 1.09004 * 109.46353 * 59.99974 * 3 2 1 35 35 H 1.09001 * 109.46889 * 300.00886 * 3 2 1 36 36 H 1.08996 * 109.47523 * 30.00320 * 5 4 3 37 37 H 1.08997 * 109.47172 * 150.00624 * 5 4 3 38 38 H 1.09006 * 109.46407 * 60.00131 * 6 5 4 39 39 H 1.08992 * 109.47012 * 179.97438 * 6 5 4 40 40 H 1.08996 * 109.47014 * 300.00519 * 6 5 4 41 41 H 1.07995 * 120.31097 * 359.97438 * 8 7 4 42 42 H 1.08005 * 120.75095 * 180.28004 * 9 8 7 43 43 H 1.08992 * 109.88291 * 300.21889 * 14 13 11 44 44 H 1.09007 * 109.87650 * 61.22936 * 14 13 11 45 45 H 1.09007 * 110.71751 * 140.55927 * 15 14 13 46 46 H 1.08996 * 110.72117 * 263.82976 * 15 14 13 47 47 H 0.96693 * 114.00211 * 179.97438 * 17 16 15 48 48 H 0.97005 * 119.99935 * 179.97438 * 21 20 18 49 49 H 1.09009 * 110.36176 * 274.97161 * 26 13 11 50 50 H 1.08993 * 110.36570 * 37.28770 * 26 13 11 51 51 H 1.07999 * 119.74265 * 180.29662 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2380 1.4424 1.2678 6 6 4.4932 2.8849 1.7096 7 6 4.1968 1.4428 -1.2000 8 6 5.5867 1.3368 -1.1917 9 6 6.2666 1.3310 -2.3794 10 6 5.5338 1.4447 -3.5709 11 6 6.2229 1.4493 -4.8756 12 8 5.5964 1.6739 -5.8933 13 7 7.5468 1.2047 -4.9394 14 6 8.4426 1.0313 -3.7866 15 6 9.8627 0.7928 -4.3417 16 6 9.7874 1.4076 -5.7643 17 8 9.9836 2.8224 -5.7220 18 6 10.7829 0.7546 -6.6882 19 1 11.4257 -0.0317 -6.3208 20 6 10.8731 1.1609 -8.0026 21 7 10.0901 2.1181 -8.4503 22 14 12.1076 0.3520 -9.1477 23 1 11.8179 -1.1016 -9.2406 24 1 12.0059 0.9637 -10.4971 25 1 13.4799 0.5502 -8.6160 26 6 8.3352 1.0604 -6.1768 27 6 4.1437 1.5475 -3.5044 28 7 3.5279 1.5436 -2.3405 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5137 -0.8901 33 1 1.8935 -0.5138 0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6766 1.9564 -0.8899 36 1 3.6493 0.9284 2.0276 37 1 5.1904 0.9287 1.1370 38 1 3.5407 3.3986 1.8404 39 1 5.0381 2.8847 2.6535 40 1 5.0819 3.3988 0.9498 41 1 6.1216 1.2553 -0.2570 42 1 7.3431 1.2453 -2.3991 43 1 8.4316 1.9301 -3.1701 44 1 8.1241 0.1726 -3.1955 45 1 10.6057 1.3119 -3.7361 46 1 10.0825 -0.2735 -4.3935 47 1 9.9455 3.2508 -6.5880 48 1 10.1538 2.4042 -9.3750 49 1 8.2799 0.0357 -6.5445 50 1 7.9798 1.7566 -6.9363 51 1 3.5684 1.6307 -4.4146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592840639.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:18 Heat of formation + Delta-G solvation = -40.815705 kcal Electronic energy + Delta-G solvation = -31023.492889 eV Core-core repulsion = 26922.876208 eV Total energy + Delta-G solvation = -4100.616682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.86383 -40.64890 -38.94469 -38.09821 -36.27280 -34.76155 -34.14593 -33.78869 -32.18117 -31.77494 -30.52944 -29.61694 -27.36405 -26.94517 -25.39570 -24.53452 -23.72649 -22.92187 -21.60675 -21.44267 -20.92864 -19.15995 -18.40944 -18.33211 -17.70302 -17.07827 -16.74265 -16.51207 -16.23271 -16.14574 -15.86376 -15.58800 -15.32659 -14.95414 -14.79019 -14.73160 -14.44957 -14.34038 -14.19498 -13.93810 -13.56793 -13.44905 -13.37330 -13.13858 -13.04949 -12.80976 -12.78186 -12.51338 -12.33352 -12.29740 -12.23655 -12.16660 -12.06036 -11.91138 -11.57526 -11.21739 -11.08460 -11.05944 -10.78710 -10.64673 -10.39390 -10.27056 -9.51300 -8.58221 -8.24662 -6.41954 -0.11572 0.34332 1.44454 1.44780 1.53168 1.86230 1.91116 2.11892 2.39628 2.93101 3.01178 3.39598 3.64199 3.74226 3.83566 3.95257 4.04792 4.09427 4.12793 4.14481 4.16414 4.24851 4.36375 4.39516 4.41631 4.52300 4.55822 4.59471 4.72447 4.75534 4.79182 4.88780 4.93097 4.96951 5.02177 5.03981 5.08255 5.16970 5.18256 5.24500 5.29942 5.37453 5.38498 5.42097 5.46349 5.54027 5.77487 5.99874 6.04688 6.30884 6.61345 6.69613 7.04780 7.17797 7.30820 7.39426 8.80595 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022766 B = 0.002255 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.634202 B =12415.512884 C =13037.880674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.123 3.877 4 N -0.596 5.596 5 C 0.111 3.889 6 C -0.169 4.169 7 C 0.412 3.588 8 C -0.236 4.236 9 C -0.034 4.034 10 C -0.261 4.261 11 C 0.567 3.433 12 O -0.603 6.603 13 N -0.609 5.609 14 C 0.096 3.904 15 C -0.115 4.115 16 C 0.232 3.768 17 O -0.591 6.591 18 C -0.554 4.554 19 H 0.073 0.927 20 C 0.023 3.977 21 N -0.920 5.920 22 Si 0.966 3.034 23 H -0.270 1.270 24 H -0.288 1.288 25 H -0.267 1.267 26 C 0.105 3.895 27 C 0.202 3.798 28 N -0.559 5.559 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.171 0.829 42 H 0.183 0.817 43 H 0.087 0.913 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.377 0.623 48 H 0.270 0.730 49 H 0.047 0.953 50 H 0.039 0.961 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.108 -3.614 25.099 28.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C 0.000 4.000 4 N -0.306 5.306 5 C -0.011 4.011 6 C -0.227 4.227 7 C 0.175 3.825 8 C -0.260 4.260 9 C -0.059 4.059 10 C -0.269 4.269 11 C 0.359 3.641 12 O -0.487 6.487 13 N -0.340 5.340 14 C -0.025 4.025 15 C -0.152 4.152 16 C 0.191 3.809 17 O -0.400 6.400 18 C -0.593 4.593 19 H 0.091 0.909 20 C -0.178 4.178 21 N -0.559 5.559 22 Si 0.791 3.209 23 H -0.195 1.195 24 H -0.213 1.213 25 H -0.192 1.192 26 C -0.018 4.018 27 C 0.043 3.957 28 N -0.277 5.277 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.061 0.939 41 H 0.188 0.812 42 H 0.200 0.800 43 H 0.104 0.896 44 H 0.121 0.879 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.227 0.773 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.057 0.943 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.487 -3.431 25.334 28.905 hybrid contribution 1.175 -0.025 -2.409 2.680 sum -12.312 -3.457 22.925 26.251 Atomic orbital electron populations 1.21661 0.94280 1.02168 1.02256 1.21816 0.96814 0.96885 1.01465 1.21560 0.78141 0.97040 1.03226 1.46801 1.06082 1.75521 1.02193 1.21828 0.98083 0.97970 0.83221 1.22199 1.02095 0.96372 1.02077 1.18946 0.89169 0.87613 0.86736 1.21472 0.92763 1.11465 1.00265 1.22804 1.03563 0.89177 0.90341 1.20379 0.95808 1.17632 0.93091 1.18285 0.80615 0.76114 0.89102 1.90695 1.66311 1.53134 1.38520 1.48594 1.06763 1.68890 1.09706 1.22695 0.89673 1.01871 0.88263 1.22724 0.95468 1.01710 0.95313 1.19857 0.88624 0.79345 0.93026 1.86040 1.95180 1.22509 1.36258 1.21821 1.20887 1.21066 0.95487 0.90876 1.25874 0.97048 0.95140 0.99694 1.69693 1.39321 1.29612 1.17310 0.85482 0.79354 0.78696 0.77340 1.19494 1.21346 1.19227 1.22888 0.93926 0.98923 0.86093 1.22487 0.90530 0.87756 0.94956 1.67354 1.39930 1.22985 0.97427 0.91197 0.93238 0.92332 0.94314 0.91084 0.88750 0.91442 0.87931 0.89038 0.92693 0.89392 0.93859 0.81180 0.80039 0.89571 0.87879 0.89073 0.88834 0.77258 0.92062 0.93435 0.94253 0.82856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.98 16 2 C -0.13 -1.84 6.26 30.60 0.19 -1.65 16 3 C 0.12 1.82 5.46 86.38 0.47 2.29 16 4 N -0.60 -9.61 2.57 -703.99 -1.81 -11.42 16 5 C 0.11 0.98 5.96 86.38 0.51 1.50 16 6 C -0.17 -1.50 10.24 71.98 0.74 -0.76 16 7 C 0.41 9.48 7.36 133.25 0.98 10.46 16 8 C -0.24 -4.83 9.20 22.23 0.20 -4.63 16 9 C -0.03 -0.88 8.63 22.46 0.19 -0.69 16 10 C -0.26 -8.81 5.89 -19.99 -0.12 -8.93 16 11 C 0.57 24.51 7.80 86.70 0.68 25.19 16 12 O -0.60 -31.11 16.62 -4.00 -0.07 -31.18 16 13 N -0.61 -25.62 3.33 -819.87 -2.73 -28.34 16 14 C 0.10 3.05 4.87 86.73 0.42 3.47 16 15 C -0.11 -4.14 6.13 31.78 0.19 -3.95 16 16 C 0.23 11.19 0.89 -10.15 -0.01 11.18 16 17 O -0.59 -30.84 13.18 -148.98 -1.96 -32.80 16 18 C -0.55 -28.55 8.25 25.60 0.21 -28.34 16 19 H 0.07 3.58 7.76 -2.91 -0.02 3.56 16 20 C 0.02 1.19 5.29 84.65 0.45 1.64 16 21 N -0.92 -50.83 10.72 21.45 0.23 -50.60 16 22 Si 0.97 41.76 29.54 68.60 2.03 43.78 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 26 C 0.10 5.24 5.65 86.85 0.49 5.73 16 27 C 0.20 6.61 10.76 85.03 0.92 7.52 16 28 N -0.56 -15.96 9.04 -192.33 -1.74 -17.70 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.04 0.76 8.14 -2.38 -0.02 0.75 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 0.94 8.07 -2.38 -0.02 0.92 16 35 H 0.07 1.32 7.28 -2.39 -0.02 1.31 16 36 H 0.10 0.50 8.07 -2.39 -0.02 0.48 16 37 H 0.09 0.65 5.95 -2.39 -0.01 0.64 16 38 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 39 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.17 2.19 5.99 -2.91 -0.02 2.18 16 42 H 0.18 4.01 2.89 -4.60 -0.01 4.00 16 43 H 0.09 2.45 6.74 -2.39 -0.02 2.44 16 44 H 0.10 2.49 6.71 -2.38 -0.02 2.47 16 45 H 0.09 3.03 8.14 -2.38 -0.02 3.01 16 46 H 0.09 3.09 8.01 -2.39 -0.02 3.07 16 47 H 0.38 20.99 6.93 -74.06 -0.51 20.48 16 48 H 0.27 14.37 8.31 -92.70 -0.77 13.60 16 49 H 0.05 2.44 8.03 -2.38 -0.02 2.42 16 50 H 0.04 2.29 7.59 -2.39 -0.02 2.27 16 51 H 0.15 5.19 7.67 -2.91 -0.02 5.17 16 Total: -1.00 -70.82 404.16 1.62 -69.20 By element: Atomic # 1 Polarization: 39.57 SS G_CDS: 0.43 Total: 40.00 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 7.24 Total: 19.06 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -6.05 Total: -108.06 kcal Atomic # 8 Polarization: -61.95 SS G_CDS: -2.03 Total: -63.98 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Total: -70.82 1.62 -69.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840639.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.386 kcal (2) G-P(sol) polarization free energy of solvation -70.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds