Wall clock time and date at job start Wed Apr 1 2020 04:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47299 * 2 1 4 4 N 1.46498 * 109.47091 * 179.97438 * 3 2 1 5 5 C 1.46492 * 120.00021 * 89.99929 * 4 3 2 6 6 C 1.53000 * 109.47183 * 269.99989 * 5 4 3 7 7 C 1.38461 * 119.99963 * 270.00039 * 4 3 2 8 8 C 1.39399 * 119.53978 * 184.73159 * 7 4 3 9 9 C 1.36855 * 119.37650 * 179.70284 * 8 7 4 10 10 C 1.40345 * 118.49648 * 0.55776 * 9 8 7 11 11 C 1.47535 * 120.47754 * 179.70874 * 10 9 8 12 12 O 1.21598 * 119.99984 * 332.82180 * 11 10 9 13 13 N 1.34780 * 120.00540 * 152.82318 * 11 10 9 14 14 C 1.47428 * 125.64462 * 3.78016 * 13 11 10 15 15 C 1.54902 * 104.83237 * 204.09233 * 14 13 11 16 16 C 1.55156 * 101.58025 * 322.99010 * 15 14 13 17 17 O 1.42903 * 110.72059 * 277.13771 * 16 15 14 18 18 C 1.50707 * 110.72063 * 154.04557 * 16 15 14 19 19 H 1.07995 * 119.99680 * 265.81285 * 18 16 15 20 20 C 1.37876 * 120.00115 * 85.81139 * 18 16 15 21 21 N 1.31511 * 119.99951 * 175.60629 * 20 18 16 22 22 Si 1.86802 * 120.00011 * 355.61047 * 20 18 16 23 23 H 1.48505 * 109.47334 * 87.63933 * 22 20 18 24 24 H 1.48500 * 109.46980 * 207.64008 * 22 20 18 25 25 H 1.48501 * 109.46909 * 327.64108 * 22 20 18 26 26 C 1.47017 * 125.65117 * 183.46812 * 13 11 10 27 27 C 1.39555 * 119.04815 * 359.72210 * 10 9 8 28 28 N 1.31681 * 120.51954 * 359.97438 * 27 10 9 29 29 H 1.09010 * 109.46621 * 60.00513 * 1 2 3 30 30 H 1.08994 * 109.47236 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47235 * 300.00510 * 1 2 3 32 32 H 1.09000 * 109.47235 * 239.99490 * 2 1 3 33 33 H 1.09001 * 109.46487 * 119.99315 * 2 1 3 34 34 H 1.08999 * 109.46927 * 59.99338 * 3 2 1 35 35 H 1.08997 * 109.46984 * 299.99596 * 3 2 1 36 36 H 1.09005 * 109.47129 * 30.00218 * 5 4 3 37 37 H 1.09002 * 109.47068 * 149.99795 * 5 4 3 38 38 H 1.09007 * 109.46806 * 180.02562 * 6 5 4 39 39 H 1.08997 * 109.46830 * 299.99714 * 6 5 4 40 40 H 1.08992 * 109.47170 * 60.00001 * 6 5 4 41 41 H 1.08001 * 120.30567 * 359.97089 * 8 7 4 42 42 H 1.08004 * 120.75075 * 180.25825 * 9 8 7 43 43 H 1.08999 * 110.36467 * 322.93561 * 14 13 11 44 44 H 1.09007 * 110.36670 * 85.25016 * 14 13 11 45 45 H 1.08994 * 111.00704 * 81.06222 * 15 14 13 46 46 H 1.09006 * 111.00435 * 204.88392 * 15 14 13 47 47 H 0.96700 * 114.00216 * 184.49245 * 17 16 15 48 48 H 0.97003 * 119.99953 * 180.02562 * 21 20 18 49 49 H 1.08991 * 109.88533 * 298.39972 * 26 13 11 50 50 H 1.09002 * 109.88035 * 59.56685 * 26 13 11 51 51 H 1.07996 * 119.74244 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.2381 1.4422 -1.2677 6 6 4.4932 -0.0004 -1.7091 7 6 4.1968 1.4426 1.2000 8 6 5.5872 1.5426 1.1915 9 6 6.2672 1.5486 2.3791 10 6 5.5340 1.4411 3.5710 11 6 6.2230 1.4365 4.8756 12 8 7.3686 1.0370 4.9567 13 7 5.5827 1.8751 5.9775 14 6 4.1755 2.3104 6.0374 15 6 4.1052 3.2579 7.2608 16 6 5.0778 2.5624 8.2496 17 8 4.4168 1.5074 8.9512 18 6 5.6590 3.5611 9.2171 19 1 6.6112 4.0253 9.0070 20 6 4.9750 3.8822 10.3704 21 7 5.5206 4.6871 11.2559 22 14 3.2736 3.1740 10.6752 23 1 3.3991 1.8581 11.3522 24 1 2.4982 4.1020 11.5370 25 1 2.5710 2.9986 9.3787 26 6 6.1701 1.9925 7.3201 27 6 4.1438 1.3382 3.5045 28 7 3.5279 1.3424 2.3406 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 1.6766 1.9563 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 3.6493 1.9560 -2.0277 37 1 5.1904 1.9561 -1.1371 38 1 5.0390 -0.0005 -2.6526 39 1 5.0820 -0.5140 -0.9491 40 1 3.5409 -0.5141 -1.8397 41 1 6.1224 1.6190 0.2565 42 1 7.3440 1.6293 2.3986 43 1 3.9048 2.8454 5.1271 44 1 3.5189 1.4526 6.1836 45 1 4.4583 4.2562 7.0027 46 1 3.0947 3.2962 7.6679 47 1 4.9606 1.0855 9.6304 48 1 5.0395 4.9127 12.0675 49 1 6.4856 1.0111 7.6739 50 1 7.0227 2.6711 7.2937 51 1 3.5685 1.2554 4.4147 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592840640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:24 Heat of formation + Delta-G solvation = -26.584485 kcal Electronic energy + Delta-G solvation = -31128.496798 eV Core-core repulsion = 27028.497228 eV Total energy + Delta-G solvation = -4099.999570 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.81329 -39.47382 -37.80695 -37.18997 -34.86519 -34.04982 -32.67265 -32.38882 -31.61457 -30.47187 -29.68869 -28.31338 -26.47104 -25.39266 -24.43812 -23.30621 -22.74394 -21.82023 -21.15832 -19.95091 -19.47683 -17.86602 -17.64529 -17.37443 -16.58913 -15.61927 -15.46937 -15.31841 -15.17624 -14.93546 -14.67530 -14.65163 -14.48034 -13.79281 -13.59295 -13.54837 -13.45202 -13.30173 -13.10520 -12.90752 -12.68300 -12.48550 -12.33437 -12.21560 -12.13497 -12.05258 -11.61407 -11.50475 -11.46248 -11.40007 -11.10060 -10.82425 -10.56664 -10.33645 -10.15990 -10.13265 -9.88267 -9.79365 -9.32830 -9.19526 -8.63277 -8.62051 -8.18890 -7.76602 -6.23042 -4.35519 0.93172 1.27773 2.57731 3.09597 3.37822 3.40457 3.48094 3.62662 3.91734 4.22452 4.41973 4.47803 4.66815 4.67434 4.74110 4.81150 4.84983 4.89413 4.94179 5.00018 5.02781 5.10734 5.13244 5.18381 5.30150 5.33104 5.38247 5.45790 5.52666 5.57772 5.62783 5.70113 5.74135 5.79463 5.84623 5.84927 5.91929 6.04192 6.11163 6.16778 6.35802 6.51453 6.58881 6.67400 6.71108 6.76338 7.09614 7.10935 7.39181 7.92957 7.96111 8.08878 8.51759 8.64408 8.79765 9.36661 10.86185 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016754 B = 0.002543 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.875159 B =11008.516908 C =12143.149824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.128 3.872 4 N -0.603 5.603 5 C 0.118 3.882 6 C -0.175 4.175 7 C 0.418 3.582 8 C -0.248 4.248 9 C 0.020 3.980 10 C -0.239 4.239 11 C 0.577 3.423 12 O -0.552 6.552 13 N -0.604 5.604 14 C 0.089 3.911 15 C -0.124 4.124 16 C 0.218 3.782 17 O -0.567 6.567 18 C -0.553 4.553 19 H 0.081 0.919 20 C 0.074 3.926 21 N -0.886 5.886 22 Si 0.936 3.064 23 H -0.289 1.289 24 H -0.322 1.322 25 H -0.262 1.262 26 C 0.096 3.904 27 C 0.173 3.827 28 N -0.542 5.542 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.374 0.626 48 H 0.267 0.733 49 H 0.061 0.939 50 H 0.074 0.926 51 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.358 -7.150 -25.967 27.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C 0.006 3.994 4 N -0.315 5.315 5 C -0.005 4.005 6 C -0.234 4.234 7 C 0.183 3.817 8 C -0.272 4.272 9 C -0.006 4.006 10 C -0.247 4.247 11 C 0.366 3.634 12 O -0.432 6.432 13 N -0.336 5.336 14 C -0.034 4.034 15 C -0.162 4.162 16 C 0.178 3.822 17 O -0.375 6.375 18 C -0.590 4.590 19 H 0.099 0.901 20 C -0.131 4.131 21 N -0.521 5.521 22 Si 0.770 3.230 23 H -0.216 1.216 24 H -0.252 1.252 25 H -0.188 1.188 26 C -0.026 4.026 27 C 0.014 3.986 28 N -0.259 5.259 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.153 0.847 42 H 0.158 0.842 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.222 0.778 48 H 0.077 0.923 49 H 0.080 0.920 50 H 0.092 0.908 51 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.176 -7.170 -26.432 28.582 hybrid contribution 0.561 -0.416 0.654 0.957 sum -7.615 -7.586 -25.778 27.929 Atomic orbital electron populations 1.21692 0.95328 1.01812 1.01859 1.21968 0.95921 0.97554 1.02416 1.21481 0.78343 0.96825 1.02790 1.46469 1.05573 1.77261 1.02159 1.21532 0.97396 0.97331 0.84240 1.22313 1.02376 0.97107 1.01586 1.18513 0.88194 0.88657 0.86370 1.21110 0.93174 1.13486 0.99450 1.21084 1.00548 0.88839 0.90141 1.20603 0.95202 1.14424 0.94436 1.17602 0.85480 0.77687 0.82648 1.90750 1.17982 1.48472 1.85998 1.48441 1.12868 1.63227 1.09102 1.22767 0.82490 0.98224 0.99896 1.23186 1.01698 0.98142 0.93153 1.20091 0.87602 0.85064 0.89467 1.86167 1.45405 1.52039 1.53848 1.21207 1.08240 1.25026 1.04571 0.90093 1.25116 0.98870 0.94008 0.95086 1.69951 1.38356 1.34493 1.09323 0.85971 0.82813 0.76593 0.77604 1.21644 1.25230 1.18774 1.22837 0.98388 1.00805 0.80601 1.23388 0.91070 0.88885 0.95254 1.67338 1.39748 1.21681 0.97180 0.92927 0.92674 0.92293 0.92263 0.91317 0.89564 0.91286 0.90252 0.90198 0.91557 0.92179 0.92085 0.84685 0.84178 0.91040 0.91143 0.89579 0.89584 0.77754 0.92315 0.92040 0.90770 0.81120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.61 16 2 C -0.14 -1.08 6.26 -26.73 -0.17 -1.24 16 3 C 0.13 1.02 5.42 -4.04 -0.02 0.99 16 4 N -0.60 -5.29 2.57 -173.87 -0.45 -5.74 16 5 C 0.12 0.71 5.99 -4.05 -0.02 0.68 16 6 C -0.18 -0.99 10.24 37.16 0.38 -0.61 16 7 C 0.42 4.83 7.36 -155.27 -1.14 3.68 16 8 C -0.25 -2.73 9.20 -39.65 -0.36 -3.10 16 9 C 0.02 0.26 9.66 -39.29 -0.38 -0.12 16 10 C -0.24 -3.63 5.71 -104.82 -0.60 -4.23 16 11 C 0.58 10.68 7.64 -12.47 -0.10 10.59 16 12 O -0.55 -11.89 17.04 5.28 0.09 -11.80 16 13 N -0.60 -11.18 3.33 -171.74 -0.57 -11.75 16 14 C 0.09 1.45 5.01 -2.53 -0.01 1.43 16 15 C -0.12 -2.39 5.81 -24.59 -0.14 -2.53 16 16 C 0.22 4.72 0.70 -89.93 -0.06 4.65 16 17 O -0.57 -11.88 9.10 -35.23 -0.32 -12.20 16 18 C -0.55 -14.36 8.75 -34.44 -0.30 -14.66 16 19 H 0.08 2.32 7.79 -52.49 -0.41 1.91 16 20 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 21 N -0.89 -25.79 13.96 55.43 0.77 -25.02 16 22 Si 0.94 22.12 24.73 -169.99 -4.20 17.92 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.32 -7.87 7.11 56.52 0.40 -7.47 16 25 H -0.26 -5.93 4.95 56.52 0.28 -5.65 16 26 C 0.10 1.97 6.23 -3.06 -0.02 1.95 16 27 C 0.17 2.39 9.12 -17.13 -0.16 2.23 16 28 N -0.54 -7.10 9.13 -12.14 -0.11 -7.21 16 29 H 0.05 0.29 8.14 -51.92 -0.42 -0.14 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.42 6.26 -51.93 -0.33 0.10 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.82 7.43 -51.93 -0.39 0.43 16 35 H 0.07 0.42 7.89 -51.93 -0.41 0.01 16 36 H 0.08 0.35 7.89 -51.93 -0.41 -0.06 16 37 H 0.08 0.44 5.96 -51.93 -0.31 0.13 16 38 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.36 6.26 -51.93 -0.33 0.04 16 41 H 0.14 1.12 5.99 -52.49 -0.31 0.81 16 42 H 0.14 1.76 7.94 -52.48 -0.42 1.34 16 43 H 0.07 1.02 6.15 -51.93 -0.32 0.70 16 44 H 0.07 1.07 7.31 -51.93 -0.38 0.70 16 45 H 0.09 1.67 8.04 -51.93 -0.42 1.26 16 46 H 0.09 1.67 6.03 -51.93 -0.31 1.36 16 47 H 0.37 7.16 8.64 45.56 0.39 7.56 16 48 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 49 H 0.06 1.25 8.07 -51.93 -0.42 0.83 16 50 H 0.07 1.63 7.64 -51.93 -0.40 1.23 16 51 H 0.17 2.24 4.56 -52.49 -0.24 2.00 16 LS Contribution 394.55 15.07 5.95 5.95 Total: -1.00 -32.14 394.55 -8.87 -41.02 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -7.19 Total: 7.80 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -2.84 Total: 1.04 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.36 Total: -49.72 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.23 Total: -24.00 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.20 Total: 17.92 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.14 -8.87 -41.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.433 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds