Wall clock time and date at job start Wed Apr 1 2020 04:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47299 * 2 1 4 4 N 1.46498 * 109.47091 * 179.97438 * 3 2 1 5 5 C 1.46492 * 120.00021 * 89.99929 * 4 3 2 6 6 C 1.53000 * 109.47183 * 269.99989 * 5 4 3 7 7 C 1.38461 * 119.99963 * 270.00039 * 4 3 2 8 8 C 1.39399 * 119.53978 * 184.73159 * 7 4 3 9 9 C 1.36855 * 119.37650 * 179.70284 * 8 7 4 10 10 C 1.40345 * 118.49648 * 0.55776 * 9 8 7 11 11 C 1.47535 * 120.47754 * 179.70874 * 10 9 8 12 12 O 1.21598 * 119.99984 * 332.82180 * 11 10 9 13 13 N 1.34780 * 120.00540 * 152.82318 * 11 10 9 14 14 C 1.47428 * 125.64462 * 3.78016 * 13 11 10 15 15 C 1.54902 * 104.83237 * 204.09233 * 14 13 11 16 16 C 1.55156 * 101.58025 * 322.99010 * 15 14 13 17 17 O 1.42903 * 110.72059 * 277.13771 * 16 15 14 18 18 C 1.50707 * 110.72063 * 154.04557 * 16 15 14 19 19 H 1.07995 * 119.99680 * 265.81285 * 18 16 15 20 20 C 1.37876 * 120.00115 * 85.81139 * 18 16 15 21 21 N 1.31511 * 119.99951 * 175.60629 * 20 18 16 22 22 Si 1.86802 * 120.00011 * 355.61047 * 20 18 16 23 23 H 1.48505 * 109.47334 * 87.63933 * 22 20 18 24 24 H 1.48500 * 109.46980 * 207.64008 * 22 20 18 25 25 H 1.48501 * 109.46909 * 327.64108 * 22 20 18 26 26 C 1.47017 * 125.65117 * 183.46812 * 13 11 10 27 27 C 1.39555 * 119.04815 * 359.72210 * 10 9 8 28 28 N 1.31681 * 120.51954 * 359.97438 * 27 10 9 29 29 H 1.09010 * 109.46621 * 60.00513 * 1 2 3 30 30 H 1.08994 * 109.47236 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47235 * 300.00510 * 1 2 3 32 32 H 1.09000 * 109.47235 * 239.99490 * 2 1 3 33 33 H 1.09001 * 109.46487 * 119.99315 * 2 1 3 34 34 H 1.08999 * 109.46927 * 59.99338 * 3 2 1 35 35 H 1.08997 * 109.46984 * 299.99596 * 3 2 1 36 36 H 1.09005 * 109.47129 * 30.00218 * 5 4 3 37 37 H 1.09002 * 109.47068 * 149.99795 * 5 4 3 38 38 H 1.09007 * 109.46806 * 180.02562 * 6 5 4 39 39 H 1.08997 * 109.46830 * 299.99714 * 6 5 4 40 40 H 1.08992 * 109.47170 * 60.00001 * 6 5 4 41 41 H 1.08001 * 120.30567 * 359.97089 * 8 7 4 42 42 H 1.08004 * 120.75075 * 180.25825 * 9 8 7 43 43 H 1.08999 * 110.36467 * 322.93561 * 14 13 11 44 44 H 1.09007 * 110.36670 * 85.25016 * 14 13 11 45 45 H 1.08994 * 111.00704 * 81.06222 * 15 14 13 46 46 H 1.09006 * 111.00435 * 204.88392 * 15 14 13 47 47 H 0.96700 * 114.00216 * 184.49245 * 17 16 15 48 48 H 0.97003 * 119.99953 * 180.02562 * 21 20 18 49 49 H 1.08991 * 109.88533 * 298.39972 * 26 13 11 50 50 H 1.09002 * 109.88035 * 59.56685 * 26 13 11 51 51 H 1.07996 * 119.74244 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.2381 1.4422 -1.2677 6 6 4.4932 -0.0004 -1.7091 7 6 4.1968 1.4426 1.2000 8 6 5.5872 1.5426 1.1915 9 6 6.2672 1.5486 2.3791 10 6 5.5340 1.4411 3.5710 11 6 6.2230 1.4365 4.8756 12 8 7.3686 1.0370 4.9567 13 7 5.5827 1.8751 5.9775 14 6 4.1755 2.3104 6.0374 15 6 4.1052 3.2579 7.2608 16 6 5.0778 2.5624 8.2496 17 8 4.4168 1.5074 8.9512 18 6 5.6590 3.5611 9.2171 19 1 6.6112 4.0253 9.0070 20 6 4.9750 3.8822 10.3704 21 7 5.5206 4.6871 11.2559 22 14 3.2736 3.1740 10.6752 23 1 3.3991 1.8581 11.3522 24 1 2.4982 4.1020 11.5370 25 1 2.5710 2.9986 9.3787 26 6 6.1701 1.9925 7.3201 27 6 4.1438 1.3382 3.5045 28 7 3.5279 1.3424 2.3406 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 1.6766 1.9563 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 3.6493 1.9560 -2.0277 37 1 5.1904 1.9561 -1.1371 38 1 5.0390 -0.0005 -2.6526 39 1 5.0820 -0.5140 -0.9491 40 1 3.5409 -0.5141 -1.8397 41 1 6.1224 1.6190 0.2565 42 1 7.3440 1.6293 2.3986 43 1 3.9048 2.8454 5.1271 44 1 3.5189 1.4526 6.1836 45 1 4.4583 4.2562 7.0027 46 1 3.0947 3.2962 7.6679 47 1 4.9606 1.0855 9.6304 48 1 5.0395 4.9127 12.0675 49 1 6.4856 1.0111 7.6739 50 1 7.0227 2.6711 7.2937 51 1 3.5685 1.2554 4.4147 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592840640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:23 Heat of formation + Delta-G solvation = -47.881030 kcal Electronic energy + Delta-G solvation = -31129.420285 eV Core-core repulsion = 27028.497228 eV Total energy + Delta-G solvation = -4100.923057 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.89322 -40.77309 -39.20429 -38.18813 -36.46473 -34.66937 -34.44915 -33.62998 -32.57696 -31.75046 -30.72376 -29.81744 -27.58728 -26.66240 -25.60181 -24.23155 -23.94707 -22.55588 -21.98584 -21.54383 -20.88420 -19.56421 -18.70534 -18.50350 -17.65821 -17.20615 -16.84653 -16.55798 -16.41116 -16.10616 -15.91579 -15.58316 -15.27539 -15.15996 -14.89311 -14.61932 -14.42019 -14.33370 -14.14872 -14.04479 -14.01519 -13.83030 -13.66304 -13.23993 -13.08301 -12.89608 -12.79251 -12.76835 -12.55983 -12.35297 -12.21391 -12.13163 -11.96482 -11.78912 -11.41355 -11.22390 -11.17724 -11.04160 -10.80191 -10.64411 -10.44553 -10.35944 -9.69592 -8.60909 -8.34507 -6.50236 -0.11368 0.31534 1.51732 1.54704 1.73267 1.78033 1.87014 1.99944 2.43405 2.86984 2.97373 3.34207 3.44160 3.60035 3.79556 3.82212 3.94703 4.02432 4.10386 4.12780 4.15353 4.18343 4.25789 4.38857 4.41303 4.44058 4.49638 4.52279 4.62398 4.69103 4.79583 4.81290 4.82193 4.90589 4.97994 4.98346 5.00754 5.09717 5.18215 5.19162 5.22893 5.28793 5.37705 5.40205 5.44715 5.49835 5.50987 5.98442 6.02646 6.29732 6.51150 6.57813 6.94017 7.00076 7.09665 7.27176 8.78889 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016754 B = 0.002543 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.875159 B =11008.516908 C =12143.149824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.125 3.875 4 N -0.595 5.595 5 C 0.110 3.890 6 C -0.171 4.171 7 C 0.415 3.585 8 C -0.238 4.238 9 C 0.013 3.987 10 C -0.263 4.263 11 C 0.576 3.424 12 O -0.593 6.593 13 N -0.607 5.607 14 C 0.099 3.901 15 C -0.123 4.123 16 C 0.220 3.780 17 O -0.561 6.561 18 C -0.552 4.552 19 H 0.037 0.963 20 C 0.025 3.975 21 N -0.937 5.937 22 Si 0.997 3.003 23 H -0.279 1.279 24 H -0.333 1.333 25 H -0.241 1.241 26 C 0.103 3.897 27 C 0.179 3.821 28 N -0.553 5.553 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.041 0.959 40 H 0.058 0.942 41 H 0.165 0.835 42 H 0.140 0.860 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.078 0.922 46 H 0.093 0.907 47 H 0.382 0.618 48 H 0.268 0.732 49 H 0.060 0.940 50 H 0.048 0.952 51 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.958 -8.130 -29.591 32.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.003 3.997 4 N -0.305 5.305 5 C -0.012 4.012 6 C -0.229 4.229 7 C 0.179 3.821 8 C -0.262 4.262 9 C -0.013 4.013 10 C -0.272 4.272 11 C 0.368 3.632 12 O -0.475 6.475 13 N -0.339 5.339 14 C -0.023 4.023 15 C -0.161 4.161 16 C 0.179 3.821 17 O -0.370 6.370 18 C -0.589 4.589 19 H 0.056 0.944 20 C -0.175 4.175 21 N -0.574 5.574 22 Si 0.828 3.172 23 H -0.206 1.206 24 H -0.265 1.265 25 H -0.165 1.165 26 C -0.021 4.021 27 C 0.019 3.981 28 N -0.271 5.271 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.183 0.817 42 H 0.158 0.842 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.097 0.903 46 H 0.111 0.889 47 H 0.232 0.768 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.067 0.933 51 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.799 -8.164 -30.126 33.028 hybrid contribution 1.421 -0.105 1.599 2.142 sum -9.379 -8.270 -28.526 31.147 Atomic orbital electron populations 1.21668 0.94399 1.02037 1.02299 1.21880 0.96684 0.97143 1.01435 1.21595 0.77760 0.97009 1.03355 1.46806 1.06203 1.75326 1.02163 1.21835 0.98049 0.97928 0.83339 1.22266 1.02200 0.96507 1.01924 1.18843 0.88741 0.87621 0.86943 1.21334 0.93073 1.12037 0.99769 1.21180 1.00704 0.89052 0.90360 1.20366 0.95854 1.17928 0.93036 1.18142 0.85059 0.76535 0.83513 1.90714 1.19856 1.50328 1.86640 1.48458 1.13740 1.63431 1.08235 1.22849 0.81426 0.98457 0.99559 1.23107 1.00993 0.98285 0.93718 1.19923 0.88691 0.84436 0.89010 1.86131 1.45310 1.51443 1.54111 1.21386 1.06630 1.25376 1.05548 0.94428 1.25917 1.02526 0.94271 0.94747 1.70081 1.40208 1.36870 1.10273 0.84982 0.78265 0.75771 0.78141 1.20586 1.26452 1.16505 1.22521 0.97421 0.99981 0.82138 1.23380 0.90339 0.88401 0.95933 1.67401 1.39800 1.22485 0.97413 0.91369 0.92606 0.92950 0.91454 0.94019 0.91121 0.88592 0.87774 0.89351 0.89650 0.93981 0.92308 0.81750 0.84219 0.88448 0.89104 0.90303 0.88906 0.76846 0.92278 0.92148 0.93329 0.80566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.13 -1.73 6.26 30.60 0.19 -1.54 16 3 C 0.13 1.60 5.42 86.38 0.47 2.07 16 4 N -0.60 -8.56 2.57 -704.01 -1.81 -10.37 16 5 C 0.11 0.88 5.99 86.38 0.52 1.39 16 6 C -0.17 -1.36 10.24 71.98 0.74 -0.62 16 7 C 0.42 8.58 7.36 133.25 0.98 9.56 16 8 C -0.24 -4.69 9.20 22.22 0.20 -4.48 16 9 C 0.01 0.33 9.66 22.46 0.22 0.55 16 10 C -0.26 -7.83 5.71 -19.99 -0.11 -7.94 16 11 C 0.58 21.48 7.64 86.69 0.66 22.14 16 12 O -0.59 -26.26 17.04 -4.02 -0.07 -26.33 16 13 N -0.61 -22.33 3.33 -815.53 -2.71 -25.04 16 14 C 0.10 3.02 5.01 86.85 0.44 3.46 16 15 C -0.12 -4.58 5.81 31.98 0.19 -4.39 16 16 C 0.22 9.50 0.70 -10.35 -0.01 9.49 16 17 O -0.56 -22.58 9.10 -148.98 -1.36 -23.94 16 18 C -0.55 -29.59 8.75 25.60 0.22 -29.36 16 19 H 0.04 2.29 7.79 -2.91 -0.02 2.27 16 20 C 0.03 1.40 5.47 84.65 0.46 1.86 16 21 N -0.94 -56.39 13.96 21.45 0.30 -56.09 16 22 Si 1.00 45.18 24.73 68.60 1.70 46.88 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 24 H -0.33 -15.69 7.11 99.48 0.71 -14.98 16 25 H -0.24 -9.98 4.95 99.48 0.49 -9.48 16 26 C 0.10 4.32 6.23 86.73 0.54 4.86 16 27 C 0.18 4.66 9.12 85.03 0.78 5.43 16 28 N -0.55 -13.40 9.13 -192.32 -1.76 -15.16 16 29 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.77 6.26 -2.39 -0.01 0.75 16 33 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 1.17 7.43 -2.39 -0.02 1.15 16 35 H 0.10 0.75 7.89 -2.39 -0.02 0.73 16 36 H 0.10 0.39 7.89 -2.38 -0.02 0.37 16 37 H 0.09 0.59 5.96 -2.39 -0.01 0.58 16 38 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 39 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.06 0.51 6.26 -2.39 -0.01 0.49 16 41 H 0.17 2.17 5.99 -2.91 -0.02 2.15 16 42 H 0.14 3.48 7.94 -2.91 -0.02 3.45 16 43 H 0.10 2.53 6.15 -2.39 -0.01 2.52 16 44 H 0.09 2.48 7.31 -2.38 -0.02 2.46 16 45 H 0.08 3.03 8.04 -2.39 -0.02 3.01 16 46 H 0.09 3.35 6.03 -2.38 -0.01 3.33 16 47 H 0.38 14.14 8.64 -74.06 -0.64 13.50 16 48 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 49 H 0.06 2.52 8.07 -2.39 -0.02 2.50 16 50 H 0.05 2.26 7.64 -2.39 -0.02 2.24 16 51 H 0.18 4.23 4.56 -2.91 -0.01 4.22 16 Total: -1.00 -72.42 394.55 1.59 -70.84 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.10 Total: 27.57 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 7.20 Total: 11.62 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -5.98 Total: -106.65 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -1.42 Total: -50.27 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.70 Total: 46.88 kcal Total: -72.42 1.59 -70.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.956 kcal (2) G-P(sol) polarization free energy of solvation -72.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds