Wall clock time and date at job start Wed Apr 1 2020 04:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46597 * 2 1 4 4 N 1.46905 * 109.46720 * 179.97438 * 3 2 1 5 5 C 1.46906 * 110.99998 * 66.04915 * 4 3 2 6 6 C 1.39839 * 110.99786 * 189.99644 * 4 3 2 7 7 C 1.38715 * 120.10696 * 300.00292 * 6 4 3 8 8 C 1.38213 * 119.99949 * 180.02562 * 7 6 4 9 9 C 1.38312 * 120.21080 * 359.97438 * 8 7 6 10 10 C 1.38198 * 120.21055 * 0.02562 * 9 8 7 11 11 C 1.38750 * 119.99627 * 359.71806 * 10 9 8 12 12 N 1.39895 * 120.10592 * 180.30196 * 11 10 9 13 13 C 1.34776 * 119.99902 * 325.33627 * 12 11 10 14 14 O 1.21400 * 119.99707 * 4.46905 * 13 12 11 15 15 C 1.49323 * 119.99964 * 184.47013 * 13 12 11 16 16 O 1.21361 * 120.00075 * 0.02562 * 15 13 12 17 17 N 1.34776 * 119.99964 * 180.02562 * 15 13 12 18 18 C 1.46493 * 120.00165 * 180.02562 * 17 15 13 19 19 C 1.53002 * 109.47542 * 179.97438 * 18 17 15 20 20 C 1.52998 * 109.47403 * 179.97438 * 19 18 17 21 21 C 1.50698 * 109.47213 * 180.02562 * 20 19 18 22 22 H 1.07996 * 119.99905 * 0.02562 * 21 20 19 23 23 C 1.37876 * 120.00280 * 179.97438 * 21 20 19 24 24 N 1.31515 * 119.99953 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00271 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47036 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47028 * 120.00306 * 25 23 21 28 28 H 1.48509 * 109.46980 * 240.00289 * 25 23 21 29 29 H 1.09005 * 109.46732 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47282 * 299.99796 * 1 2 3 31 31 H 1.09001 * 109.46966 * 60.00304 * 1 2 3 32 32 H 1.09000 * 109.46945 * 240.00438 * 2 1 3 33 33 H 1.08992 * 109.46907 * 119.99974 * 2 1 3 34 34 H 1.09001 * 109.47214 * 299.99544 * 3 2 1 35 35 H 1.08993 * 109.47659 * 60.00179 * 3 2 1 36 36 H 1.09001 * 109.47161 * 59.99277 * 5 4 3 37 37 H 1.08997 * 109.46911 * 179.97438 * 5 4 3 38 38 H 1.09002 * 109.46742 * 299.99915 * 5 4 3 39 39 H 1.08003 * 120.00160 * 359.97438 * 7 6 4 40 40 H 1.07999 * 119.89801 * 179.97438 * 8 7 6 41 41 H 1.08000 * 119.89405 * 179.97438 * 9 8 7 42 42 H 1.08000 * 119.99979 * 180.02562 * 10 9 8 43 43 H 0.96994 * 119.99909 * 145.34041 * 12 11 10 44 44 H 0.97007 * 119.99804 * 0.02562 * 17 15 13 45 45 H 1.09007 * 109.47438 * 300.00194 * 18 17 15 46 46 H 1.09006 * 109.47230 * 60.00167 * 18 17 15 47 47 H 1.08996 * 109.47241 * 300.00140 * 19 18 17 48 48 H 1.09006 * 109.46681 * 59.99880 * 19 18 17 49 49 H 1.08996 * 109.47141 * 300.00330 * 20 19 18 50 50 H 1.09000 * 109.47029 * 59.99948 * 20 19 18 51 51 H 0.96998 * 120.00619 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0360 0.8856 -1.2525 6 6 4.0099 2.7283 0.2273 7 6 3.6994 3.7601 -0.6464 8 6 4.1962 5.0299 -0.4205 9 6 5.0029 5.2769 0.6755 10 6 5.3178 4.2554 1.5514 11 6 4.8195 2.9786 1.3360 12 7 5.1316 1.9443 2.2247 13 6 6.3415 1.9073 2.8174 14 8 7.1304 2.8135 2.6438 15 6 6.7115 0.7516 3.6876 16 8 5.9230 -0.1545 3.8608 17 7 7.9212 0.7148 4.2808 18 6 8.2845 -0.4192 5.1341 19 6 9.6997 -0.2150 5.6786 20 6 10.0788 -1.3991 6.5703 21 6 11.4724 -1.1977 7.1071 22 1 12.0316 -0.3134 6.8394 23 6 12.0332 -2.1419 7.9408 24 7 11.3521 -3.2185 8.2672 25 14 13.7610 -1.8926 8.6056 26 1 14.3093 -0.6118 8.0914 27 1 13.7196 -1.8537 10.0895 28 1 14.6280 -3.0145 8.1638 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.6867 1.4863 -2.0923 37 1 5.1256 0.8979 -1.2256 38 1 3.6865 -0.1402 -1.3694 39 1 3.0701 3.5710 -1.5035 40 1 3.9537 5.8319 -1.1020 41 1 5.3887 6.2710 0.8468 42 1 5.9477 4.4522 2.4064 43 1 4.4774 1.2538 2.4143 44 1 8.5513 1.4393 4.1426 45 1 7.5818 -0.4888 5.9645 46 1 8.2494 -1.3391 4.5503 47 1 10.4021 -0.1457 4.8480 48 1 9.7352 0.7049 6.2622 49 1 9.3763 -1.4680 7.4008 50 1 10.0431 -2.3192 5.9870 51 1 11.7467 -3.8829 8.8534 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599946447.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:29 Heat of formation + Delta-G solvation = -48.559129 kcal Electronic energy + Delta-G solvation = -29606.909925 eV Core-core repulsion = 25505.957463 eV Total energy + Delta-G solvation = -4100.952462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.28015 -40.03792 -38.58848 -37.29377 -35.85258 -34.92809 -33.68903 -33.32101 -31.26662 -30.42590 -29.72628 -27.46133 -27.24385 -25.32645 -24.91193 -23.33033 -22.41730 -21.61168 -21.00755 -20.78015 -20.03205 -18.66499 -17.72204 -17.12554 -16.45565 -16.38746 -16.20776 -15.85305 -15.61967 -15.32775 -15.12991 -14.82718 -14.62533 -14.44285 -14.22230 -13.84010 -13.76893 -13.49541 -13.40701 -12.94358 -12.65997 -12.38923 -12.32527 -12.26994 -12.03473 -11.89312 -11.83346 -11.80739 -11.53782 -11.40558 -10.97540 -10.93519 -10.77281 -10.65252 -10.57996 -9.91473 -9.80951 -9.40894 -9.13471 -9.11798 -9.00938 -8.95695 -8.42964 -8.38785 -6.03300 -4.06238 0.75887 0.97387 1.50139 2.27065 3.11799 3.29873 3.32699 3.37503 3.41342 3.44902 3.61057 4.40788 4.44918 4.46057 4.56003 4.62009 4.71869 4.81122 4.90966 4.97139 5.03161 5.04733 5.16143 5.24489 5.31351 5.32786 5.33943 5.48000 5.54576 5.57779 5.66344 5.68103 5.77165 5.83687 5.90619 5.95510 6.06993 6.10003 6.19857 6.23893 6.45687 6.49228 6.53072 6.67320 6.85541 6.94228 7.02843 7.36942 7.61404 7.66109 7.72719 7.95072 8.00008 8.36347 9.00535 9.58219 11.07997 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.001788 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.204028 B =15659.223672 C =17011.476104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.058 3.942 4 N -0.507 5.507 5 C 0.029 3.971 6 C 0.064 3.936 7 C -0.131 4.131 8 C -0.124 4.124 9 C -0.103 4.103 10 C -0.116 4.116 11 C 0.167 3.833 12 N -0.633 5.633 13 C 0.508 3.492 14 O -0.506 6.506 15 C 0.503 3.497 16 O -0.520 6.520 17 N -0.690 5.690 18 C 0.114 3.886 19 C -0.123 4.123 20 C 0.024 3.976 21 C -0.522 4.522 22 H 0.057 0.943 23 C 0.056 3.944 24 N -0.894 5.894 25 Si 0.893 3.107 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.145 0.855 43 H 0.428 0.572 44 H 0.411 0.589 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.057 0.943 49 H 0.020 0.980 50 H 0.020 0.980 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.852 14.376 -21.138 33.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.068 4.068 4 N -0.228 5.228 5 C -0.117 4.117 6 C -0.032 4.032 7 C -0.152 4.152 8 C -0.144 4.144 9 C -0.121 4.121 10 C -0.136 4.136 11 C 0.071 3.929 12 N -0.279 5.279 13 C 0.291 3.709 14 O -0.380 6.380 15 C 0.282 3.718 16 O -0.396 6.396 17 N -0.342 5.342 18 C -0.008 4.008 19 C -0.161 4.161 20 C -0.014 4.014 21 C -0.560 4.560 22 H 0.075 0.925 23 C -0.145 4.145 24 N -0.533 5.533 25 Si 0.721 3.279 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.146 0.854 42 H 0.163 0.837 43 H 0.267 0.733 44 H 0.247 0.753 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.038 0.962 50 H 0.038 0.962 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.637 13.794 -20.594 32.903 hybrid contribution 0.678 0.522 -0.301 0.907 sum -20.959 14.316 -20.895 32.876 Atomic orbital electron populations 1.21729 0.95411 1.01999 1.01747 1.21571 0.95555 0.95897 1.03135 1.22288 0.85498 0.97752 1.01267 1.59527 1.08267 1.18638 1.36336 1.22462 1.00911 1.00031 0.88340 1.18545 1.00940 0.89600 0.94124 1.21402 1.01025 0.93398 0.99367 1.21040 0.98508 0.96576 0.98264 1.21108 0.97539 0.99090 0.94408 1.21340 1.00654 0.90397 1.01230 1.17612 0.97912 0.87613 0.89756 1.43013 1.15660 1.27388 1.41793 1.20536 0.81971 0.87372 0.81060 1.90758 1.49905 1.37233 1.60100 1.19755 0.83664 0.86600 0.81753 1.90786 1.49883 1.37586 1.61384 1.46056 1.15346 1.25466 1.47285 1.21865 0.98563 0.87257 0.93126 1.21931 0.91880 1.02193 1.00071 1.19037 0.96576 0.91784 0.93975 1.21237 1.00040 1.05989 1.28766 0.92507 1.25031 0.97869 0.95218 0.96383 1.69970 1.37280 1.09948 1.36081 0.86519 0.84537 0.78136 0.78698 1.19728 1.20997 1.21004 0.92318 0.92557 0.92962 0.91781 0.90690 0.94337 0.90578 0.95063 0.91175 0.90430 0.86007 0.85909 0.85406 0.83745 0.73264 0.75283 0.90992 0.91018 0.92410 0.92405 0.96171 0.96176 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.43 16 2 C -0.12 -0.77 5.86 -26.73 -0.16 -0.93 16 3 C 0.06 0.40 4.54 -3.82 -0.02 0.38 16 4 N -0.51 -4.23 4.22 -178.75 -0.75 -4.98 16 5 C 0.03 0.22 9.05 60.07 0.54 0.76 16 6 C 0.06 0.60 4.69 -83.54 -0.39 0.20 16 7 C -0.13 -1.04 8.70 -39.41 -0.34 -1.38 16 8 C -0.12 -0.93 10.04 -39.56 -0.40 -1.33 16 9 C -0.10 -0.87 10.04 -39.57 -0.40 -1.26 16 10 C -0.12 -1.23 8.70 -39.41 -0.34 -1.57 16 11 C 0.17 1.82 6.33 -83.50 -0.53 1.29 16 12 N -0.63 -7.31 5.15 -10.15 -0.05 -7.36 16 13 C 0.51 6.77 7.73 -11.65 -0.09 6.68 16 14 O -0.51 -7.30 13.89 5.45 0.08 -7.22 16 15 C 0.50 7.47 7.88 -11.65 -0.09 7.38 16 16 O -0.52 -8.80 16.48 5.49 0.09 -8.71 16 17 N -0.69 -10.17 5.55 -60.77 -0.34 -10.50 16 18 C 0.11 1.93 5.67 -4.04 -0.02 1.91 16 19 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 20 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 21 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 22 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 23 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 24 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 25 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.38 6.55 -51.93 -0.34 0.04 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.04 0.24 7.48 -51.93 -0.39 -0.15 16 35 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 36 H 0.03 0.20 7.48 -51.93 -0.39 -0.19 16 37 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 38 H 0.08 0.50 6.47 -51.93 -0.34 0.17 16 39 H 0.12 0.77 7.16 -52.48 -0.38 0.40 16 40 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.14 1.67 6.19 -52.49 -0.33 1.34 16 43 H 0.43 4.74 7.99 -40.82 -0.33 4.41 16 44 H 0.41 5.48 7.94 -40.82 -0.32 5.16 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 51 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 420.43 15.07 6.34 6.34 Total: -1.00 -31.42 420.43 -9.74 -41.16 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -8.26 Total: 4.35 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -2.56 Total: -3.63 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -0.41 Total: -48.72 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.17 Total: -15.93 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -31.42 -9.74 -41.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599946447.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.396 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds