Wall clock time and date at job start Wed Apr 1 2020 04:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46597 * 2 1 4 4 N 1.46905 * 109.46720 * 179.97438 * 3 2 1 5 5 C 1.46906 * 110.99998 * 66.04915 * 4 3 2 6 6 C 1.39839 * 110.99786 * 189.99644 * 4 3 2 7 7 C 1.38715 * 120.10696 * 300.00292 * 6 4 3 8 8 C 1.38213 * 119.99949 * 180.02562 * 7 6 4 9 9 C 1.38312 * 120.21080 * 359.97438 * 8 7 6 10 10 C 1.38198 * 120.21055 * 0.02562 * 9 8 7 11 11 C 1.38750 * 119.99627 * 359.71806 * 10 9 8 12 12 N 1.39895 * 120.10592 * 180.30196 * 11 10 9 13 13 C 1.34776 * 119.99902 * 325.33627 * 12 11 10 14 14 O 1.21400 * 119.99707 * 4.46905 * 13 12 11 15 15 C 1.49323 * 119.99964 * 184.47013 * 13 12 11 16 16 O 1.21361 * 120.00075 * 0.02562 * 15 13 12 17 17 N 1.34776 * 119.99964 * 180.02562 * 15 13 12 18 18 C 1.46493 * 120.00165 * 180.02562 * 17 15 13 19 19 C 1.53002 * 109.47542 * 179.97438 * 18 17 15 20 20 C 1.52998 * 109.47403 * 179.97438 * 19 18 17 21 21 C 1.50698 * 109.47213 * 180.02562 * 20 19 18 22 22 H 1.07996 * 119.99905 * 0.02562 * 21 20 19 23 23 C 1.37876 * 120.00280 * 179.97438 * 21 20 19 24 24 N 1.31515 * 119.99953 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00271 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47036 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47028 * 120.00306 * 25 23 21 28 28 H 1.48509 * 109.46980 * 240.00289 * 25 23 21 29 29 H 1.09005 * 109.46732 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47282 * 299.99796 * 1 2 3 31 31 H 1.09001 * 109.46966 * 60.00304 * 1 2 3 32 32 H 1.09000 * 109.46945 * 240.00438 * 2 1 3 33 33 H 1.08992 * 109.46907 * 119.99974 * 2 1 3 34 34 H 1.09001 * 109.47214 * 299.99544 * 3 2 1 35 35 H 1.08993 * 109.47659 * 60.00179 * 3 2 1 36 36 H 1.09001 * 109.47161 * 59.99277 * 5 4 3 37 37 H 1.08997 * 109.46911 * 179.97438 * 5 4 3 38 38 H 1.09002 * 109.46742 * 299.99915 * 5 4 3 39 39 H 1.08003 * 120.00160 * 359.97438 * 7 6 4 40 40 H 1.07999 * 119.89801 * 179.97438 * 8 7 6 41 41 H 1.08000 * 119.89405 * 179.97438 * 9 8 7 42 42 H 1.08000 * 119.99979 * 180.02562 * 10 9 8 43 43 H 0.96994 * 119.99909 * 145.34041 * 12 11 10 44 44 H 0.97007 * 119.99804 * 0.02562 * 17 15 13 45 45 H 1.09007 * 109.47438 * 300.00194 * 18 17 15 46 46 H 1.09006 * 109.47230 * 60.00167 * 18 17 15 47 47 H 1.08996 * 109.47241 * 300.00140 * 19 18 17 48 48 H 1.09006 * 109.46681 * 59.99880 * 19 18 17 49 49 H 1.08996 * 109.47141 * 300.00330 * 20 19 18 50 50 H 1.09000 * 109.47029 * 59.99948 * 20 19 18 51 51 H 0.96998 * 120.00619 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0360 0.8856 -1.2525 6 6 4.0099 2.7283 0.2273 7 6 3.6994 3.7601 -0.6464 8 6 4.1962 5.0299 -0.4205 9 6 5.0029 5.2769 0.6755 10 6 5.3178 4.2554 1.5514 11 6 4.8195 2.9786 1.3360 12 7 5.1316 1.9443 2.2247 13 6 6.3415 1.9073 2.8174 14 8 7.1304 2.8135 2.6438 15 6 6.7115 0.7516 3.6876 16 8 5.9230 -0.1545 3.8608 17 7 7.9212 0.7148 4.2808 18 6 8.2845 -0.4192 5.1341 19 6 9.6997 -0.2150 5.6786 20 6 10.0788 -1.3991 6.5703 21 6 11.4724 -1.1977 7.1071 22 1 12.0316 -0.3134 6.8394 23 6 12.0332 -2.1419 7.9408 24 7 11.3521 -3.2185 8.2672 25 14 13.7610 -1.8926 8.6056 26 1 14.3093 -0.6118 8.0914 27 1 13.7196 -1.8537 10.0895 28 1 14.6280 -3.0145 8.1638 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.6867 1.4863 -2.0923 37 1 5.1256 0.8979 -1.2256 38 1 3.6865 -0.1402 -1.3694 39 1 3.0701 3.5710 -1.5035 40 1 3.9537 5.8319 -1.1020 41 1 5.3887 6.2710 0.8468 42 1 5.9477 4.4522 2.4064 43 1 4.4774 1.2538 2.4143 44 1 8.5513 1.4393 4.1426 45 1 7.5818 -0.4888 5.9645 46 1 8.2494 -1.3391 4.5503 47 1 10.4021 -0.1457 4.8480 48 1 9.7352 0.7049 6.2622 49 1 9.3763 -1.4680 7.4008 50 1 10.0431 -2.3192 5.9870 51 1 11.7467 -3.8829 8.8534 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599946447.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:28 Heat of formation + Delta-G solvation = -68.238147 kcal Electronic energy + Delta-G solvation = -29607.763271 eV Core-core repulsion = 25505.957463 eV Total energy + Delta-G solvation = -4101.805808 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.23435 -40.94592 -39.65598 -37.95361 -37.23702 -36.01204 -35.15480 -34.20598 -33.05936 -31.14562 -30.43613 -28.95490 -27.98490 -26.48515 -25.69430 -24.71267 -23.39380 -22.40475 -22.34190 -21.63251 -21.16022 -19.74863 -18.71749 -18.37647 -17.91664 -17.42250 -17.28015 -16.73840 -16.47002 -16.42957 -16.24273 -16.00413 -15.81292 -15.42820 -15.19416 -14.91872 -14.74193 -14.30349 -14.28568 -13.89493 -13.77822 -13.64046 -13.51355 -13.22017 -13.15350 -12.84071 -12.78741 -12.65953 -12.57554 -12.47143 -12.37893 -12.34852 -11.95902 -11.70692 -11.58006 -11.50078 -11.41770 -11.21507 -10.74365 -10.55426 -10.33365 -9.79327 -9.55029 -9.19832 -8.19545 -6.30307 -0.11212 0.29308 0.54572 1.18814 1.41710 1.42275 1.55268 2.01090 2.41103 2.52126 2.71974 2.76946 3.14430 3.29605 3.89333 3.97995 4.07329 4.10004 4.15153 4.17921 4.22940 4.34599 4.41246 4.47140 4.47525 4.52213 4.54379 4.64539 4.75133 4.80579 4.84632 4.90725 4.91368 4.98067 5.13422 5.15664 5.21066 5.22143 5.24719 5.30204 5.39955 5.42683 5.51951 5.53670 5.70896 5.80614 5.84282 5.84714 5.91681 6.22108 6.26482 6.33342 6.63446 6.82338 6.86950 7.39057 8.92546 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.001788 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.204028 B =15659.223672 C =17011.476104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.062 3.938 4 N -0.520 5.520 5 C 0.030 3.970 6 C 0.063 3.937 7 C -0.131 4.131 8 C -0.116 4.116 9 C -0.106 4.106 10 C -0.131 4.131 11 C 0.138 3.862 12 N -0.622 5.622 13 C 0.514 3.486 14 O -0.519 6.519 15 C 0.506 3.494 16 O -0.542 6.542 17 N -0.683 5.683 18 C 0.127 3.873 19 C -0.106 4.106 20 C 0.024 3.976 21 C -0.541 4.541 22 H 0.064 0.936 23 C -0.003 4.003 24 N -0.933 5.933 25 Si 0.966 3.034 26 H -0.261 1.261 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.142 0.858 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.129 0.871 43 H 0.429 0.571 44 H 0.420 0.580 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.068 0.932 49 H -0.003 1.003 50 H -0.004 1.004 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.191 16.294 -22.937 35.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.064 4.064 4 N -0.241 5.241 5 C -0.116 4.116 6 C -0.033 4.033 7 C -0.151 4.151 8 C -0.135 4.135 9 C -0.125 4.125 10 C -0.152 4.152 11 C 0.043 3.957 12 N -0.267 5.267 13 C 0.296 3.704 14 O -0.395 6.395 15 C 0.286 3.714 16 O -0.420 6.420 17 N -0.335 5.335 18 C 0.004 3.996 19 C -0.144 4.144 20 C -0.013 4.013 21 C -0.579 4.579 22 H 0.082 0.918 23 C -0.200 4.200 24 N -0.573 5.573 25 Si 0.790 3.210 26 H -0.184 1.184 27 H -0.205 1.205 28 H -0.206 1.206 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.160 0.840 40 H 0.170 0.830 41 H 0.165 0.835 42 H 0.147 0.853 43 H 0.268 0.732 44 H 0.258 0.742 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.015 0.985 50 H 0.015 0.985 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.995 15.744 -22.422 35.133 hybrid contribution 0.689 -0.050 0.191 0.717 sum -21.305 15.693 -22.231 34.560 Atomic orbital electron populations 1.21706 0.94556 1.02230 1.02108 1.21534 0.96242 0.95497 1.02561 1.22276 0.84535 0.98047 1.01508 1.59498 1.09179 1.18428 1.37034 1.22456 0.99977 1.00737 0.88408 1.18659 1.00385 0.90443 0.93794 1.21664 1.00865 0.93154 0.99463 1.21402 0.96997 0.97179 0.97891 1.21368 0.97496 0.99398 0.94193 1.21348 1.01126 0.91087 1.01594 1.17851 0.99654 0.87522 0.90675 1.42911 1.14832 1.27539 1.41418 1.20114 0.82532 0.86642 0.81144 1.90755 1.50443 1.37443 1.60839 1.20014 0.83166 0.86756 0.81449 1.90773 1.50502 1.38582 1.62174 1.45847 1.15727 1.25052 1.46903 1.21504 0.97097 0.87801 0.93158 1.21643 0.93309 0.99974 0.99448 1.18939 0.95351 0.93192 0.93858 1.21708 1.01226 1.06198 1.28765 0.91752 1.25988 1.02348 0.94908 0.96784 1.70102 1.39341 1.10955 1.36935 0.85389 0.79126 0.78499 0.77959 1.18443 1.20532 1.20565 0.92183 0.92707 0.92064 0.91374 0.92240 0.93077 0.91209 0.93679 0.92679 0.89705 0.83994 0.82983 0.83465 0.85300 0.73185 0.74236 0.91556 0.91684 0.91443 0.91363 0.98477 0.98520 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 71.98 0.71 -0.66 16 2 C -0.12 -1.39 5.86 30.60 0.18 -1.21 16 3 C 0.06 0.76 4.54 86.30 0.39 1.15 16 4 N -0.52 -8.17 4.22 -719.45 -3.04 -11.20 16 5 C 0.03 0.41 9.05 127.69 1.16 1.57 16 6 C 0.06 1.10 4.69 38.29 0.18 1.28 16 7 C -0.13 -1.74 8.70 22.38 0.19 -1.54 16 8 C -0.12 -1.39 10.04 22.28 0.22 -1.16 16 9 C -0.11 -1.59 10.04 22.28 0.22 -1.37 16 10 C -0.13 -2.73 8.70 22.38 0.19 -2.53 16 11 C 0.14 2.96 6.33 38.29 0.24 3.21 16 12 N -0.62 -14.58 5.15 -304.38 -1.57 -16.15 16 13 C 0.51 13.84 7.73 87.23 0.67 14.51 16 14 O -0.52 -15.06 13.89 -3.40 -0.05 -15.11 16 15 C 0.51 15.15 7.88 87.23 0.69 15.84 16 16 O -0.54 -18.65 16.48 -3.28 -0.05 -18.70 16 17 N -0.68 -20.02 5.55 -464.54 -2.58 -22.59 16 18 C 0.13 4.35 5.67 86.38 0.49 4.84 16 19 C -0.11 -4.06 5.27 30.59 0.16 -3.90 16 20 C 0.02 1.25 4.97 29.85 0.15 1.39 16 21 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 22 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 23 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 24 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 25 Si 0.97 43.97 29.54 68.60 2.03 45.99 16 26 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 28 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 29 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.73 6.55 -2.39 -0.02 0.71 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 0.50 7.48 -2.39 -0.02 0.48 16 35 H 0.07 0.94 8.06 -2.39 -0.02 0.92 16 36 H 0.04 0.48 7.48 -2.39 -0.02 0.46 16 37 H 0.05 0.91 8.12 -2.39 -0.02 0.89 16 38 H 0.08 1.00 6.47 -2.39 -0.02 0.99 16 39 H 0.14 1.30 7.16 -2.91 -0.02 1.28 16 40 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 41 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.13 3.04 6.19 -2.91 -0.02 3.02 16 43 H 0.43 9.73 7.99 -92.71 -0.74 8.99 16 44 H 0.42 10.93 7.94 -92.70 -0.74 10.20 16 45 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 46 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 47 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 48 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 49 H 0.00 -0.18 8.14 -2.39 -0.02 -0.19 16 50 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 51 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -67.94 420.43 1.05 -66.89 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: -0.53 Total: 25.35 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 6.56 Total: 1.81 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -6.90 Total: -106.23 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -0.10 Total: -33.81 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -67.94 1.05 -66.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599946447.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.352 kcal (2) G-P(sol) polarization free energy of solvation -67.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds