Wall clock time and date at job start Wed Apr 1 2020 04:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47147 * 2 1 4 4 N 1.46905 * 109.46970 * 179.97438 * 3 2 1 5 5 C 1.46904 * 110.99947 * 293.94898 * 4 3 2 6 6 C 1.39834 * 110.99833 * 169.99962 * 4 3 2 7 7 C 1.38729 * 120.10457 * 60.27866 * 6 4 3 8 8 C 1.38218 * 119.99622 * 180.27694 * 7 6 4 9 9 C 1.38304 * 120.21261 * 359.71573 * 8 7 6 10 10 C 1.38201 * 120.21388 * 0.02562 * 9 8 7 11 11 C 1.38752 * 119.99155 * 359.97438 * 10 9 8 12 12 N 1.39901 * 120.10276 * 180.02562 * 11 10 9 13 13 C 1.34774 * 119.99660 * 34.72724 * 12 11 10 14 14 O 1.21391 * 120.00433 * 355.31560 * 13 12 11 15 15 C 1.49322 * 120.00124 * 175.32304 * 13 12 11 16 16 O 1.21366 * 119.99580 * 5.93634 * 15 13 12 17 17 N 1.34771 * 120.00670 * 185.93817 * 15 13 12 18 18 C 1.46499 * 119.99771 * 356.46092 * 17 15 13 19 19 C 1.46499 * 120.00448 * 176.45665 * 17 15 13 20 20 H 1.08994 * 109.46962 * 0.02562 * 19 17 15 21 21 C 1.52997 * 109.47519 * 240.00138 * 19 17 15 22 22 C 1.50702 * 109.47031 * 120.00223 * 19 17 15 23 23 H 1.07998 * 120.00046 * 0.02562 * 22 19 17 24 24 C 1.37879 * 119.99893 * 180.02562 * 22 19 17 25 25 N 1.31522 * 119.99958 * 0.02562 * 24 22 19 26 26 Si 1.86798 * 119.99919 * 179.97438 * 24 22 19 27 27 H 1.48499 * 109.47251 * 269.99835 * 26 24 22 28 28 H 1.48502 * 109.47109 * 30.00077 * 26 24 22 29 29 H 1.48501 * 109.46775 * 150.00257 * 26 24 22 30 30 H 1.08998 * 109.47077 * 300.00251 * 1 2 3 31 31 H 1.08997 * 109.47134 * 59.99964 * 1 2 3 32 32 H 1.08994 * 109.47259 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47077 * 239.99749 * 2 1 3 34 34 H 1.09007 * 109.46717 * 119.99664 * 2 1 3 35 35 H 1.08998 * 109.47338 * 59.99908 * 3 2 1 36 36 H 1.08997 * 109.47133 * 300.00037 * 3 2 1 37 37 H 1.08998 * 109.47145 * 296.04871 * 5 4 3 38 38 H 1.09006 * 109.46842 * 56.04895 * 5 4 3 39 39 H 1.08999 * 109.46940 * 176.04846 * 5 4 3 40 40 H 1.08000 * 120.00293 * 359.97438 * 7 6 4 41 41 H 1.07999 * 119.88989 * 179.74564 * 8 7 6 42 42 H 1.07997 * 119.89702 * 180.02562 * 9 8 7 43 43 H 1.07999 * 120.00559 * 180.02562 * 10 9 8 44 44 H 0.97000 * 119.99921 * 214.72140 * 12 11 10 45 45 H 1.09005 * 109.46810 * 275.97036 * 18 17 15 46 46 H 1.09004 * 109.47524 * 35.96959 * 18 17 15 47 47 H 1.08997 * 109.47476 * 155.97314 * 18 17 15 48 48 H 1.09010 * 109.47163 * 59.99399 * 21 19 17 49 49 H 1.08991 * 109.47978 * 179.97438 * 21 19 17 50 50 H 1.09005 * 109.47146 * 300.00503 * 21 19 17 51 51 H 0.96995 * 119.99849 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0349 0.8859 1.2543 6 6 4.0103 2.7280 -0.2261 7 6 3.7038 3.7589 0.6503 8 6 4.1957 5.0300 0.4209 9 6 4.9987 5.2778 -0.6776 10 6 5.3139 4.2562 -1.5533 11 6 4.8248 2.9769 -1.3314 12 7 5.1428 1.9408 -2.2160 13 6 6.3525 1.9090 -2.8094 14 8 7.1343 2.8226 -2.6432 15 6 6.7311 0.7499 -3.6713 16 8 5.9132 -0.1101 -3.9252 17 7 7.9809 0.6586 -4.1673 18 6 8.9453 1.7346 -3.9254 19 6 8.3752 -0.5165 -4.9482 20 1 7.5321 -1.2033 -5.0218 21 6 9.5464 -1.2182 -4.2578 22 6 8.7926 -0.0842 -6.3302 23 1 8.7672 0.9613 -6.5997 24 6 9.2070 -1.0235 -7.2506 25 7 9.2375 -2.2968 -6.9225 26 14 9.7237 -0.4878 -8.9639 27 1 8.5411 -0.4930 -9.8619 28 1 10.2934 0.8822 -8.9034 29 1 10.7476 -1.4270 -9.4883 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.7435 1.5264 2.0867 38 1 3.6292 -0.1144 1.4062 39 1 5.1223 0.8326 1.2002 40 1 3.0768 3.5693 1.5090 41 1 3.9526 5.8322 1.1020 42 1 5.3806 6.2729 -0.8516 43 1 5.9415 4.4534 -2.4097 44 1 4.4928 1.2454 -2.4023 45 1 8.8048 2.5217 -4.6663 46 1 8.7906 2.1436 -2.9269 47 1 9.9580 1.3391 -4.0031 48 1 9.2446 -1.5308 -3.2581 49 1 9.8395 -2.0927 -4.8385 50 1 10.3895 -0.5311 -4.1844 51 1 9.5293 -2.9576 -7.5698 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599969052.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:38 Heat of formation + Delta-G solvation = -17.803738 kcal Electronic energy + Delta-G solvation = -31223.147341 eV Core-core repulsion = 27123.528533 eV Total energy + Delta-G solvation = -4099.618808 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.98243 -39.74676 -38.10108 -37.07063 -35.81399 -34.56657 -33.52420 -32.73366 -30.21099 -29.58577 -29.35737 -27.29160 -26.26137 -25.31344 -25.08766 -24.57110 -22.78803 -21.64537 -20.84541 -20.50117 -19.17339 -17.80983 -17.11582 -16.88231 -16.37671 -15.98210 -15.76761 -15.70715 -15.36462 -15.10728 -14.92967 -14.55370 -14.24729 -14.05834 -13.72340 -13.39150 -13.25799 -13.14724 -12.75634 -12.60501 -12.49939 -12.40169 -12.18562 -12.08422 -11.87782 -11.72758 -11.58304 -11.48620 -11.23520 -11.07758 -10.85172 -10.80973 -10.78155 -10.65017 -10.34859 -10.20980 -10.17272 -9.22427 -8.96156 -8.83194 -8.65434 -8.45274 -8.17299 -7.69923 -6.10412 -4.18445 1.02921 1.18604 1.98627 2.76928 3.27279 3.33658 3.36597 3.51813 3.55198 3.79776 4.09186 4.38723 4.61716 4.73041 4.78437 4.81399 4.90883 4.99495 5.07541 5.12632 5.19422 5.21282 5.22683 5.35566 5.44163 5.48923 5.49570 5.66714 5.72324 5.79980 5.92990 6.02435 6.04388 6.10038 6.15844 6.23799 6.36298 6.41237 6.59071 6.65279 6.70565 6.74661 6.76588 6.97638 7.11413 7.25016 7.35017 7.43364 7.66669 7.89988 8.05156 8.11358 8.37484 8.64201 8.87440 9.47701 10.95078 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013510 B = 0.002686 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.107850 B =10420.713893 C =11617.301606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.059 3.941 4 N -0.506 5.506 5 C 0.029 3.971 6 C 0.060 3.940 7 C -0.131 4.131 8 C -0.130 4.130 9 C -0.103 4.103 10 C -0.118 4.118 11 C 0.174 3.826 12 N -0.637 5.637 13 C 0.508 3.492 14 O -0.505 6.505 15 C 0.493 3.507 16 O -0.534 6.534 17 N -0.552 5.552 18 C 0.073 3.927 19 C 0.255 3.745 20 H 0.067 0.933 21 C -0.148 4.148 22 C -0.526 4.526 23 H 0.061 0.939 24 C 0.066 3.934 25 N -0.888 5.888 26 Si 0.901 3.099 27 H -0.279 1.279 28 H -0.274 1.274 29 H -0.285 1.285 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.030 0.970 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.146 0.854 44 H 0.427 0.573 45 H 0.051 0.949 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.013 0.987 49 H 0.097 0.903 50 H 0.033 0.967 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.793 10.574 17.406 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.067 4.067 4 N -0.227 5.227 5 C -0.117 4.117 6 C -0.036 4.036 7 C -0.152 4.152 8 C -0.149 4.149 9 C -0.122 4.122 10 C -0.138 4.138 11 C 0.078 3.922 12 N -0.283 5.283 13 C 0.292 3.708 14 O -0.380 6.380 15 C 0.274 3.726 16 O -0.412 6.412 17 N -0.283 5.283 18 C -0.070 4.070 19 C 0.155 3.845 20 H 0.084 0.916 21 C -0.206 4.206 22 C -0.565 4.565 23 H 0.079 0.921 24 C -0.137 4.137 25 N -0.526 5.526 26 Si 0.728 3.272 27 H -0.205 1.205 28 H -0.198 1.198 29 H -0.211 1.211 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.048 0.952 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.144 0.856 43 H 0.163 0.837 44 H 0.266 0.734 45 H 0.070 0.930 46 H 0.106 0.894 47 H 0.088 0.912 48 H 0.032 0.968 49 H 0.115 0.885 50 H 0.053 0.947 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.374 10.164 16.859 23.252 hybrid contribution -0.200 0.479 -0.332 0.616 sum -12.574 10.643 16.526 23.335 Atomic orbital electron populations 1.21724 0.95501 1.01918 1.01693 1.21581 0.95465 0.95998 1.03177 1.22265 0.85639 0.97654 1.01162 1.59490 1.08162 1.18817 1.36189 1.22464 1.01111 0.99769 0.88387 1.18538 1.01228 0.89531 0.94343 1.21367 1.01114 0.93446 0.99260 1.20986 0.99023 0.96485 0.98415 1.21083 0.97600 0.99019 0.94449 1.21369 1.00866 0.90360 1.01226 1.17663 0.97153 0.87749 0.89665 1.43150 1.16071 1.26943 1.42163 1.20964 0.81389 0.87953 0.80486 1.90629 1.49235 1.37457 1.60670 1.19576 0.84366 0.86146 0.82522 1.90729 1.49274 1.41079 1.60150 1.48247 1.09466 1.22086 1.48452 1.22137 0.93123 0.89500 1.02265 1.19156 0.95182 0.81612 0.88517 0.91569 1.22115 0.98526 1.02528 0.97452 1.21285 1.45076 0.94146 0.95987 0.92051 1.24886 0.95225 0.94779 0.98809 1.69875 1.47129 1.00434 1.35143 0.86450 0.78357 0.78459 0.83889 1.20549 1.19839 1.21076 0.93033 0.92557 0.92374 0.90588 0.91815 0.94491 0.90587 0.95184 0.90522 0.91151 0.86193 0.86121 0.85594 0.83679 0.73377 0.93026 0.89438 0.91236 0.96793 0.88467 0.94749 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.12 -1.01 5.87 -26.73 -0.16 -1.17 16 3 C 0.06 0.52 4.55 -3.82 -0.02 0.51 16 4 N -0.51 -5.38 4.21 -178.75 -0.75 -6.13 16 5 C 0.03 0.27 9.19 60.07 0.55 0.83 16 6 C 0.06 0.69 4.70 -83.54 -0.39 0.30 16 7 C -0.13 -1.29 8.66 -39.41 -0.34 -1.63 16 8 C -0.13 -1.21 10.04 -39.56 -0.40 -1.61 16 9 C -0.10 -1.07 10.04 -39.57 -0.40 -1.47 16 10 C -0.12 -1.53 8.70 -39.40 -0.34 -1.87 16 11 C 0.17 2.36 6.33 -83.50 -0.53 1.84 16 12 N -0.64 -9.68 5.16 -10.16 -0.05 -9.73 16 13 C 0.51 9.02 7.62 -11.65 -0.09 8.93 16 14 O -0.50 -9.00 10.55 5.46 0.06 -8.95 16 15 C 0.49 10.49 7.73 -11.65 -0.09 10.40 16 16 O -0.53 -12.54 15.82 5.48 0.09 -12.45 16 17 N -0.55 -12.27 2.75 -175.82 -0.48 -12.76 16 18 C 0.07 1.39 8.75 59.85 0.52 1.91 16 19 C 0.25 6.51 2.62 -69.08 -0.18 6.33 16 20 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 21 C -0.15 -3.52 8.96 37.16 0.33 -3.19 16 22 C -0.53 -14.29 8.37 -34.44 -0.29 -14.58 16 23 H 0.06 1.66 7.65 -52.49 -0.40 1.26 16 24 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 25 N -0.89 -24.85 11.32 55.43 0.63 -24.23 16 26 Si 0.90 21.07 29.54 -169.99 -5.02 16.04 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.49 6.47 -51.92 -0.34 0.15 16 35 H 0.04 0.29 7.49 -51.93 -0.39 -0.10 16 36 H 0.08 0.71 8.06 -51.93 -0.42 0.29 16 37 H 0.03 0.25 7.33 -51.93 -0.38 -0.13 16 38 H 0.08 0.64 6.30 -51.93 -0.33 0.31 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.12 0.98 7.14 -52.49 -0.37 0.60 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 43 H 0.15 2.06 6.19 -52.49 -0.32 1.74 16 44 H 0.43 6.39 7.98 -40.82 -0.33 6.07 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.09 1.56 5.36 -51.93 -0.28 1.29 16 47 H 0.07 1.31 6.44 -51.93 -0.33 0.97 16 48 H 0.01 0.29 8.14 -51.92 -0.42 -0.13 16 49 H 0.10 2.52 6.07 -51.93 -0.32 2.20 16 50 H 0.03 0.76 6.67 -51.93 -0.35 0.41 16 51 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 LS Contribution 405.47 15.07 6.11 6.11 Total: -1.00 -29.78 405.47 -8.82 -38.59 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -7.85 Total: 6.96 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -1.54 Total: 6.54 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.66 Total: -52.85 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.14 Total: -21.40 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -29.78 -8.82 -38.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599969052.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.790 kcal (2) G-P(sol) polarization free energy of solvation -29.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds