Wall clock time and date at job start Wed Apr 1 2020 04:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47147 * 2 1 4 4 N 1.46905 * 109.46970 * 179.97438 * 3 2 1 5 5 C 1.46904 * 110.99947 * 293.94898 * 4 3 2 6 6 C 1.39834 * 110.99833 * 169.99962 * 4 3 2 7 7 C 1.38729 * 120.10457 * 60.27866 * 6 4 3 8 8 C 1.38218 * 119.99622 * 180.27694 * 7 6 4 9 9 C 1.38304 * 120.21261 * 359.71573 * 8 7 6 10 10 C 1.38201 * 120.21388 * 0.02562 * 9 8 7 11 11 C 1.38752 * 119.99155 * 359.97438 * 10 9 8 12 12 N 1.39901 * 120.10276 * 180.02562 * 11 10 9 13 13 C 1.34774 * 119.99660 * 34.72724 * 12 11 10 14 14 O 1.21391 * 120.00433 * 355.31560 * 13 12 11 15 15 C 1.49322 * 120.00124 * 175.32304 * 13 12 11 16 16 O 1.21366 * 119.99580 * 5.93634 * 15 13 12 17 17 N 1.34771 * 120.00670 * 185.93817 * 15 13 12 18 18 C 1.46499 * 119.99771 * 356.46092 * 17 15 13 19 19 C 1.46499 * 120.00448 * 176.45665 * 17 15 13 20 20 H 1.08994 * 109.46962 * 0.02562 * 19 17 15 21 21 C 1.52997 * 109.47519 * 240.00138 * 19 17 15 22 22 C 1.50702 * 109.47031 * 120.00223 * 19 17 15 23 23 H 1.07998 * 120.00046 * 0.02562 * 22 19 17 24 24 C 1.37879 * 119.99893 * 180.02562 * 22 19 17 25 25 N 1.31522 * 119.99958 * 0.02562 * 24 22 19 26 26 Si 1.86798 * 119.99919 * 179.97438 * 24 22 19 27 27 H 1.48499 * 109.47251 * 269.99835 * 26 24 22 28 28 H 1.48502 * 109.47109 * 30.00077 * 26 24 22 29 29 H 1.48501 * 109.46775 * 150.00257 * 26 24 22 30 30 H 1.08998 * 109.47077 * 300.00251 * 1 2 3 31 31 H 1.08997 * 109.47134 * 59.99964 * 1 2 3 32 32 H 1.08994 * 109.47259 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47077 * 239.99749 * 2 1 3 34 34 H 1.09007 * 109.46717 * 119.99664 * 2 1 3 35 35 H 1.08998 * 109.47338 * 59.99908 * 3 2 1 36 36 H 1.08997 * 109.47133 * 300.00037 * 3 2 1 37 37 H 1.08998 * 109.47145 * 296.04871 * 5 4 3 38 38 H 1.09006 * 109.46842 * 56.04895 * 5 4 3 39 39 H 1.08999 * 109.46940 * 176.04846 * 5 4 3 40 40 H 1.08000 * 120.00293 * 359.97438 * 7 6 4 41 41 H 1.07999 * 119.88989 * 179.74564 * 8 7 6 42 42 H 1.07997 * 119.89702 * 180.02562 * 9 8 7 43 43 H 1.07999 * 120.00559 * 180.02562 * 10 9 8 44 44 H 0.97000 * 119.99921 * 214.72140 * 12 11 10 45 45 H 1.09005 * 109.46810 * 275.97036 * 18 17 15 46 46 H 1.09004 * 109.47524 * 35.96959 * 18 17 15 47 47 H 1.08997 * 109.47476 * 155.97314 * 18 17 15 48 48 H 1.09010 * 109.47163 * 59.99399 * 21 19 17 49 49 H 1.08991 * 109.47978 * 179.97438 * 21 19 17 50 50 H 1.09005 * 109.47146 * 300.00503 * 21 19 17 51 51 H 0.96995 * 119.99849 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0349 0.8859 1.2543 6 6 4.0103 2.7280 -0.2261 7 6 3.7038 3.7589 0.6503 8 6 4.1957 5.0300 0.4209 9 6 4.9987 5.2778 -0.6776 10 6 5.3139 4.2562 -1.5533 11 6 4.8248 2.9769 -1.3314 12 7 5.1428 1.9408 -2.2160 13 6 6.3525 1.9090 -2.8094 14 8 7.1343 2.8226 -2.6432 15 6 6.7311 0.7499 -3.6713 16 8 5.9132 -0.1101 -3.9252 17 7 7.9809 0.6586 -4.1673 18 6 8.9453 1.7346 -3.9254 19 6 8.3752 -0.5165 -4.9482 20 1 7.5321 -1.2033 -5.0218 21 6 9.5464 -1.2182 -4.2578 22 6 8.7926 -0.0842 -6.3302 23 1 8.7672 0.9613 -6.5997 24 6 9.2070 -1.0235 -7.2506 25 7 9.2375 -2.2968 -6.9225 26 14 9.7237 -0.4878 -8.9639 27 1 8.5411 -0.4930 -9.8619 28 1 10.2934 0.8822 -8.9034 29 1 10.7476 -1.4270 -9.4883 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.7435 1.5264 2.0867 38 1 3.6292 -0.1144 1.4062 39 1 5.1223 0.8326 1.2002 40 1 3.0768 3.5693 1.5090 41 1 3.9526 5.8322 1.1020 42 1 5.3806 6.2729 -0.8516 43 1 5.9415 4.4534 -2.4097 44 1 4.4928 1.2454 -2.4023 45 1 8.8048 2.5217 -4.6663 46 1 8.7906 2.1436 -2.9269 47 1 9.9580 1.3391 -4.0031 48 1 9.2446 -1.5308 -3.2581 49 1 9.8395 -2.0927 -4.8385 50 1 10.3895 -0.5311 -4.1844 51 1 9.5293 -2.9576 -7.5698 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599969052.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:37 Heat of formation + Delta-G solvation = -35.072296 kcal Electronic energy + Delta-G solvation = -31223.896162 eV Core-core repulsion = 27123.528533 eV Total energy + Delta-G solvation = -4100.367629 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.23761 -40.93878 -39.55435 -37.95278 -37.52967 -35.89741 -34.69060 -34.19646 -31.51390 -31.03371 -30.36664 -27.98680 -27.86990 -27.34428 -26.27484 -25.63827 -23.91292 -22.65483 -21.98121 -21.54970 -20.70249 -19.06158 -18.65335 -18.24061 -17.90273 -17.41706 -17.13870 -16.89362 -16.47193 -16.32294 -15.98356 -15.85782 -15.37603 -15.15918 -15.00898 -14.69289 -14.49207 -14.28592 -14.05950 -13.89494 -13.68211 -13.52728 -13.43129 -13.18196 -12.99813 -12.84585 -12.76998 -12.75961 -12.67712 -12.53581 -12.34897 -12.28166 -12.19711 -12.04713 -11.94626 -11.48908 -11.38924 -11.23965 -10.57655 -10.30654 -9.76064 -9.54771 -9.51257 -9.13700 -8.17794 -6.34263 -0.02970 0.32171 0.64774 1.34297 1.41884 1.43555 1.53590 2.12051 2.39067 2.61394 2.75382 2.79400 3.10558 3.30299 3.91119 3.98953 4.10697 4.17097 4.24258 4.36071 4.40869 4.43625 4.47401 4.48978 4.55358 4.64993 4.70978 4.71870 4.77981 4.81551 4.85365 4.91250 4.98405 4.98573 5.03492 5.19883 5.21959 5.28154 5.33016 5.37142 5.40041 5.42828 5.47489 5.56496 5.60724 5.83957 5.88256 5.94408 6.05030 6.09055 6.36653 6.49366 6.66368 6.76813 6.99200 7.36465 8.86933 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013510 B = 0.002686 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.107850 B =10420.713893 C =11617.301606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.063 3.937 4 N -0.524 5.524 5 C 0.031 3.969 6 C 0.061 3.939 7 C -0.129 4.129 8 C -0.116 4.116 9 C -0.104 4.104 10 C -0.132 4.132 11 C 0.139 3.861 12 N -0.624 5.624 13 C 0.517 3.483 14 O -0.508 6.508 15 C 0.486 3.514 16 O -0.565 6.565 17 N -0.561 5.561 18 C 0.079 3.921 19 C 0.259 3.741 20 H 0.022 0.978 21 C -0.135 4.135 22 C -0.543 4.543 23 H 0.058 0.942 24 C 0.020 3.980 25 N -0.913 5.913 26 Si 0.965 3.035 27 H -0.280 1.280 28 H -0.265 1.265 29 H -0.277 1.277 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.047 0.953 38 H 0.085 0.915 39 H 0.053 0.947 40 H 0.144 0.856 41 H 0.155 0.845 42 H 0.149 0.851 43 H 0.127 0.873 44 H 0.426 0.574 45 H 0.052 0.948 46 H 0.103 0.897 47 H 0.072 0.928 48 H 0.024 0.976 49 H 0.075 0.925 50 H 0.048 0.952 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.520 12.780 19.204 26.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.062 4.062 4 N -0.246 5.246 5 C -0.115 4.115 6 C -0.035 4.035 7 C -0.150 4.150 8 C -0.135 4.135 9 C -0.123 4.123 10 C -0.153 4.153 11 C 0.044 3.956 12 N -0.269 5.269 13 C 0.300 3.700 14 O -0.384 6.384 15 C 0.268 3.732 16 O -0.445 6.445 17 N -0.291 5.291 18 C -0.063 4.063 19 C 0.158 3.842 20 H 0.040 0.960 21 C -0.193 4.193 22 C -0.582 4.582 23 H 0.076 0.924 24 C -0.180 4.180 25 N -0.552 5.552 26 Si 0.790 3.210 27 H -0.206 1.206 28 H -0.190 1.190 29 H -0.202 1.202 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.162 0.838 41 H 0.173 0.827 42 H 0.166 0.834 43 H 0.145 0.855 44 H 0.264 0.736 45 H 0.071 0.929 46 H 0.121 0.879 47 H 0.091 0.909 48 H 0.043 0.957 49 H 0.094 0.906 50 H 0.067 0.933 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.118 12.405 18.696 25.991 hybrid contribution -0.089 -0.174 -0.791 0.815 sum -13.207 12.231 17.904 25.389 Atomic orbital electron populations 1.21697 0.94378 1.02259 1.02158 1.21549 0.96395 0.95550 1.02456 1.22255 0.84508 0.98001 1.01483 1.59447 1.09271 1.18707 1.37153 1.22458 1.00059 1.00628 0.88384 1.18655 1.00441 0.90492 0.93889 1.21654 1.00903 0.93099 0.99318 1.21395 0.97086 0.97116 0.97894 1.21358 0.97485 0.99291 0.94126 1.21349 1.01315 0.91022 1.01586 1.17925 0.99476 0.87470 0.90683 1.42964 1.14798 1.27319 1.41860 1.20111 0.82439 0.86781 0.80706 1.90615 1.49627 1.37044 1.61109 1.20219 0.83694 0.86886 0.82363 1.90697 1.50050 1.42575 1.61207 1.48227 1.10546 1.22000 1.48372 1.22223 0.92465 0.88507 1.03124 1.18811 0.93956 0.82320 0.89106 0.95969 1.21917 0.98302 1.01730 0.97360 1.21502 1.45494 0.94082 0.97079 0.92405 1.25684 0.95087 0.94768 1.02474 1.69997 1.47458 1.01347 1.36382 0.85450 0.77960 0.78490 0.79107 1.20601 1.18956 1.20226 0.91811 0.92809 0.92142 0.92640 0.91214 0.92804 0.91434 0.93470 0.89678 0.92845 0.83825 0.82748 0.83352 0.85516 0.73559 0.92908 0.87931 0.90922 0.95677 0.90622 0.93334 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 71.98 0.71 -1.10 16 2 C -0.12 -1.87 5.87 30.59 0.18 -1.69 16 3 C 0.06 1.02 4.55 86.30 0.39 1.42 16 4 N -0.52 -10.62 4.21 -719.45 -3.03 -13.65 16 5 C 0.03 0.54 9.19 127.69 1.17 1.71 16 6 C 0.06 1.33 4.70 38.29 0.18 1.51 16 7 C -0.13 -2.13 8.66 22.38 0.19 -1.93 16 8 C -0.12 -1.72 10.04 22.28 0.22 -1.49 16 9 C -0.10 -1.91 10.04 22.28 0.22 -1.68 16 10 C -0.13 -3.35 8.70 22.38 0.19 -3.15 16 11 C 0.14 3.74 6.33 38.29 0.24 3.98 16 12 N -0.62 -19.47 5.16 -304.39 -1.57 -21.05 16 13 C 0.52 18.81 7.62 87.23 0.66 19.47 16 14 O -0.51 -18.24 10.55 -3.37 -0.04 -18.28 16 15 C 0.49 21.48 7.73 87.23 0.67 22.16 16 16 O -0.56 -27.98 15.82 -3.30 -0.05 -28.03 16 17 N -0.56 -25.64 2.75 -828.54 -2.28 -27.92 16 18 C 0.08 3.01 8.75 127.77 1.12 4.12 16 19 C 0.26 13.70 2.62 44.25 0.12 13.82 16 20 H 0.02 1.37 6.90 -2.39 -0.02 1.35 16 21 C -0.13 -6.55 8.96 71.98 0.64 -5.90 16 22 C -0.54 -30.09 8.37 25.60 0.21 -29.87 16 23 H 0.06 3.17 7.65 -2.91 -0.02 3.15 16 24 C 0.02 1.10 5.30 84.65 0.45 1.55 16 25 N -0.91 -52.17 11.32 21.45 0.24 -51.93 16 26 Si 0.97 43.36 29.54 68.60 2.03 45.39 16 27 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 28 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 29 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 0.98 6.47 -2.38 -0.02 0.96 16 35 H 0.05 0.69 7.49 -2.39 -0.02 0.67 16 36 H 0.07 1.20 8.06 -2.39 -0.02 1.18 16 37 H 0.05 0.64 7.33 -2.39 -0.02 0.63 16 38 H 0.08 1.30 6.30 -2.38 -0.02 1.28 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.14 1.69 7.14 -2.91 -0.02 1.67 16 41 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 42 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 43 H 0.13 3.64 6.19 -2.91 -0.02 3.62 16 44 H 0.43 13.33 7.98 -92.71 -0.74 12.59 16 45 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 46 H 0.10 3.63 5.36 -2.47 -0.01 3.61 16 47 H 0.07 2.70 6.44 -2.39 -0.02 2.68 16 48 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 49 H 0.08 4.02 6.07 -2.39 -0.01 4.01 16 50 H 0.05 2.17 6.67 -2.38 -0.02 2.15 16 51 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -65.99 405.47 3.10 -62.89 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 0.21 Total: 29.67 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: 7.60 Total: 22.91 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -6.64 Total: -114.55 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: -0.09 Total: -46.31 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -65.99 3.10 -62.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599969052.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.817 kcal (2) G-P(sol) polarization free energy of solvation -65.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds