Wall clock time and date at job start Wed Apr 1 2020 04:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.53000 * 109.47011 * 2 1 4 4 N 1.46898 * 109.47101 * 180.02562 * 3 2 1 5 5 C 1.46896 * 111.00125 * 293.95957 * 4 3 2 6 6 C 1.39831 * 111.00097 * 170.00325 * 4 3 2 7 7 C 1.38728 * 120.10802 * 60.27613 * 6 4 3 8 8 C 1.38202 * 119.99918 * 180.27882 * 7 6 4 9 9 C 1.38312 * 120.21459 * 359.72076 * 8 7 6 10 10 C 1.38198 * 120.20736 * 0.02562 * 9 8 7 11 11 C 1.38746 * 120.00074 * 0.02562 * 10 9 8 12 12 N 1.39885 * 120.10738 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99801 * 19.88351 * 12 11 10 14 14 O 1.21390 * 120.00318 * 5.69653 * 13 12 11 15 15 C 1.49326 * 119.99836 * 185.69359 * 13 12 11 16 16 O 1.21368 * 120.00208 * 359.97438 * 15 13 12 17 17 N 1.34780 * 119.99798 * 180.02562 * 15 13 12 18 18 C 1.46499 * 119.99957 * 180.02562 * 17 15 13 19 19 H 1.09007 * 109.47289 * 34.99578 * 18 17 15 20 20 C 1.50696 * 109.47246 * 154.99376 * 18 17 15 21 21 H 1.08000 * 120.00281 * 5.68796 * 20 18 17 22 22 C 1.37880 * 120.00298 * 185.68133 * 20 18 17 23 23 N 1.31513 * 120.00388 * 196.56099 * 22 20 18 24 24 Si 1.86806 * 119.99815 * 16.56180 * 22 20 18 25 25 H 1.48497 * 109.47132 * 179.97438 * 24 22 20 26 26 H 1.48505 * 109.46852 * 299.99949 * 24 22 20 27 27 H 1.48501 * 109.47044 * 59.99420 * 24 22 20 28 28 C 1.53003 * 109.47088 * 274.99858 * 18 17 15 29 29 C 1.52997 * 109.47239 * 66.17687 * 28 18 17 30 30 H 1.08998 * 109.46870 * 59.99625 * 1 2 3 31 31 H 1.08999 * 109.46625 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46568 * 299.99757 * 1 2 3 33 33 H 1.08997 * 109.46568 * 240.00243 * 2 1 3 34 34 H 1.08998 * 109.46870 * 120.00375 * 2 1 3 35 35 H 1.09003 * 109.46859 * 60.00476 * 3 2 1 36 36 H 1.08996 * 109.47366 * 300.00394 * 3 2 1 37 37 H 1.09003 * 109.47070 * 296.04516 * 5 4 3 38 38 H 1.09005 * 109.47771 * 56.04001 * 5 4 3 39 39 H 1.09002 * 109.47739 * 176.04752 * 5 4 3 40 40 H 1.07994 * 119.99456 * 359.97438 * 7 6 4 41 41 H 1.08006 * 119.89590 * 179.75203 * 8 7 6 42 42 H 1.08001 * 119.89436 * 180.02562 * 9 8 7 43 43 H 1.08003 * 120.00056 * 180.02562 * 10 9 8 44 44 H 0.96998 * 120.00381 * 199.88166 * 12 11 10 45 45 H 0.97001 * 120.00043 * 359.97438 * 17 15 13 46 46 H 0.96999 * 119.99570 * 354.92998 * 23 22 20 47 47 H 1.09002 * 109.46866 * 186.17741 * 28 18 17 48 48 H 1.09000 * 109.46839 * 306.17482 * 28 18 17 49 49 H 1.09006 * 109.47062 * 59.99836 * 29 28 18 50 50 H 1.08995 * 109.47491 * 180.02562 * 29 28 18 51 51 H 1.09002 * 109.47055 * 300.00350 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0361 0.8854 1.2523 6 6 4.0101 2.7282 -0.2273 7 6 3.7043 3.7588 0.6496 8 6 4.1960 5.0299 0.4203 9 6 4.9980 5.2782 -0.6789 10 6 5.3124 4.2568 -1.5551 11 6 4.8227 2.9776 -1.3339 12 7 5.1390 1.9422 -2.2197 13 6 6.2053 2.0562 -3.0362 14 8 6.9506 3.0087 -2.9321 15 6 6.4699 1.0106 -4.0690 16 8 5.7251 0.0579 -4.1729 17 7 7.5365 1.1243 -4.8851 18 6 7.7958 0.0988 -5.8987 19 1 6.8487 -0.2781 -6.2849 20 6 8.5953 0.6983 -7.0267 21 1 8.9602 1.7119 -6.9509 22 6 8.8611 -0.0473 -8.1557 23 7 9.8089 0.3306 -8.9853 24 14 7.8747 -1.5945 -8.5068 25 1 8.3513 -2.2089 -9.7719 26 1 8.0513 -2.5580 -7.3906 27 1 6.4371 -1.2460 -8.6371 28 6 8.5843 -1.0519 -5.2700 29 6 7.7130 -1.7586 -4.2297 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6768 1.9563 0.8901 36 1 1.6767 1.9564 -0.8899 37 1 3.7454 1.5257 2.0852 38 1 3.6305 -0.1149 1.4043 39 1 5.1234 0.8322 1.1974 40 1 3.0781 3.5688 1.5087 41 1 3.9536 5.8319 1.1019 42 1 5.3798 6.2733 -0.8528 43 1 5.9393 4.4543 -2.4121 44 1 4.5911 1.1423 -2.2464 45 1 8.1320 1.8854 -4.8019 46 1 10.2710 1.1715 -8.8431 47 1 8.8719 -1.7617 -6.0456 48 1 9.4790 -0.6583 -4.7877 49 1 6.8182 -2.1521 -4.7120 50 1 8.2748 -2.5780 -3.7814 51 1 7.4253 -1.0488 -3.4541 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599969572.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:47 Heat of formation + Delta-G solvation = -35.490877 kcal Electronic energy + Delta-G solvation = -31120.560203 eV Core-core repulsion = 27020.174423 eV Total energy + Delta-G solvation = -4100.385780 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.10798 -39.81987 -38.42737 -37.12305 -35.66265 -34.75568 -33.57906 -32.47133 -31.49832 -30.24150 -29.55473 -27.50840 -27.35174 -25.21542 -24.73996 -22.89880 -22.30996 -21.62108 -20.90560 -20.30619 -19.65742 -18.71924 -17.73983 -17.12152 -16.99766 -16.18436 -15.94199 -15.74193 -15.39003 -15.18158 -15.01538 -14.61269 -14.31566 -14.01797 -13.70959 -13.55613 -13.37450 -13.32076 -12.88919 -12.70997 -12.56605 -12.50714 -12.35517 -12.27712 -12.14949 -11.92070 -11.80119 -11.69254 -11.36217 -11.07778 -10.94851 -10.87194 -10.76461 -10.61750 -10.48881 -9.94775 -9.63921 -9.22040 -9.10909 -8.95547 -8.82586 -8.39192 -8.30613 -8.12880 -6.62946 -4.27208 0.94516 1.14514 1.87121 2.60629 3.34751 3.41226 3.43667 3.46431 3.56014 3.71160 4.02882 4.37784 4.55760 4.67471 4.72931 4.84129 4.90516 4.95891 5.02738 5.06364 5.11705 5.14033 5.17030 5.31960 5.38385 5.43168 5.44672 5.60676 5.68820 5.73838 5.87076 5.95040 5.99319 6.02186 6.02310 6.12371 6.17527 6.28171 6.38315 6.57114 6.57853 6.67929 6.70672 6.80340 6.91983 7.02129 7.15300 7.27472 7.28626 7.51750 7.82290 8.18066 8.26599 8.50061 8.76536 9.42212 10.78324 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013166 B = 0.002768 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.241701 B =10114.205593 C =11494.012779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.059 3.941 4 N -0.507 5.507 5 C 0.028 3.972 6 C 0.051 3.949 7 C -0.127 4.127 8 C -0.135 4.135 9 C -0.098 4.098 10 C -0.137 4.137 11 C 0.178 3.822 12 N -0.632 5.632 13 C 0.505 3.495 14 O -0.505 6.505 15 C 0.495 3.505 16 O -0.528 6.528 17 N -0.661 5.661 18 C 0.246 3.754 19 H 0.046 0.954 20 C -0.620 4.620 21 H 0.064 0.936 22 C 0.041 3.959 23 N -0.895 5.895 24 Si 1.040 2.960 25 H -0.282 1.282 26 H -0.268 1.268 27 H -0.279 1.279 28 C -0.140 4.140 29 C -0.145 4.145 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.038 0.962 36 H 0.076 0.924 37 H 0.030 0.970 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.158 0.842 44 H 0.430 0.570 45 H 0.406 0.594 46 H 0.270 0.730 47 H 0.073 0.927 48 H 0.054 0.946 49 H 0.053 0.947 50 H 0.034 0.966 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.415 4.063 21.633 26.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.067 4.067 4 N -0.228 5.228 5 C -0.119 4.119 6 C -0.045 4.045 7 C -0.147 4.147 8 C -0.155 4.155 9 C -0.117 4.117 10 C -0.157 4.157 11 C 0.081 3.919 12 N -0.277 5.277 13 C 0.288 3.712 14 O -0.379 6.379 15 C 0.274 3.726 16 O -0.406 6.406 17 N -0.310 5.310 18 C 0.143 3.857 19 H 0.064 0.936 20 C -0.658 4.658 21 H 0.083 0.917 22 C -0.166 4.166 23 N -0.527 5.527 24 Si 0.867 3.133 25 H -0.208 1.208 26 H -0.194 1.194 27 H -0.205 1.205 28 C -0.179 4.179 29 C -0.203 4.203 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.049 0.951 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.144 0.856 43 H 0.176 0.824 44 H 0.269 0.731 45 H 0.241 0.759 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.053 0.947 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.322 2.383 20.068 25.361 hybrid contribution -0.086 1.936 1.882 2.702 sum -15.408 4.319 21.950 27.164 Atomic orbital electron populations 1.21729 0.95458 1.01931 1.01758 1.21580 0.95534 0.95982 1.03075 1.22270 0.85562 0.97648 1.01265 1.59465 1.08285 1.18856 1.36181 1.22477 1.01051 0.99785 0.88541 1.18391 1.01657 0.89661 0.94820 1.21331 1.00868 0.93396 0.99120 1.20989 0.99330 0.96510 0.98636 1.21120 0.97215 0.99035 0.94288 1.21715 1.01734 0.90338 1.01923 1.17723 0.96730 0.87901 0.89574 1.43154 1.28686 1.20560 1.35272 1.20914 0.80618 0.87277 0.82376 1.90652 1.45924 1.32169 1.69190 1.19653 0.83725 0.86109 0.83148 1.90744 1.47402 1.31927 1.70574 1.46196 1.25020 1.26947 1.32855 1.19262 0.96235 0.84991 0.85207 0.93581 1.22075 1.38845 1.02613 1.02254 0.91749 1.25691 0.95077 1.03234 0.92645 1.70869 1.18621 1.22428 1.40822 0.84124 0.76344 0.75943 0.76897 1.20808 1.19431 1.20528 1.22382 0.98678 0.98472 0.98381 1.21902 0.99674 0.99308 0.99370 0.92534 0.92366 0.92983 0.90671 0.91820 0.94400 0.90550 0.95101 0.90530 0.91153 0.86175 0.86123 0.85552 0.82439 0.73060 0.75911 0.91953 0.90858 0.92751 0.92827 0.94729 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.12 -0.92 5.86 -26.72 -0.16 -1.08 16 3 C 0.06 0.49 4.55 -3.83 -0.02 0.47 16 4 N -0.51 -5.00 4.01 -178.76 -0.72 -5.71 16 5 C 0.03 0.24 9.19 60.06 0.55 0.79 16 6 C 0.05 0.57 4.70 -83.54 -0.39 0.18 16 7 C -0.13 -1.22 8.66 -39.41 -0.34 -1.56 16 8 C -0.14 -1.26 10.04 -39.57 -0.40 -1.66 16 9 C -0.10 -1.04 10.04 -39.57 -0.40 -1.43 16 10 C -0.14 -1.80 8.78 -39.41 -0.35 -2.15 16 11 C 0.18 2.36 6.52 -83.51 -0.54 1.82 16 12 N -0.63 -9.07 5.30 -10.16 -0.05 -9.12 16 13 C 0.50 8.43 7.73 -11.64 -0.09 8.34 16 14 O -0.50 -8.91 13.39 5.46 0.07 -8.84 16 15 C 0.49 9.40 6.51 -11.64 -0.08 9.32 16 16 O -0.53 -10.66 13.62 5.48 0.07 -10.59 16 17 N -0.66 -13.59 5.03 -55.40 -0.28 -13.86 16 18 C 0.25 5.73 1.81 -69.08 -0.13 5.61 16 19 H 0.05 1.14 6.25 -51.92 -0.32 0.82 16 20 C -0.62 -16.54 9.01 -34.44 -0.31 -16.85 16 21 H 0.06 1.82 7.96 -52.49 -0.42 1.40 16 22 C 0.04 1.12 5.31 -17.82 -0.09 1.03 16 23 N -0.89 -26.33 13.70 55.43 0.76 -25.57 16 24 Si 1.04 24.40 26.27 -169.99 -4.47 19.93 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.27 -5.82 5.70 56.52 0.32 -5.50 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 C -0.14 -3.05 5.27 -26.73 -0.14 -3.19 16 29 C -0.15 -2.81 8.54 37.16 0.32 -2.49 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.44 6.47 -51.93 -0.34 0.10 16 35 H 0.04 0.28 7.49 -51.93 -0.39 -0.10 16 36 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 37 H 0.03 0.23 7.33 -51.93 -0.38 -0.15 16 38 H 0.08 0.56 6.30 -51.93 -0.33 0.23 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.12 0.95 7.14 -52.49 -0.37 0.57 16 41 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 42 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 43 H 0.16 2.32 5.44 -52.48 -0.29 2.04 16 44 H 0.43 5.94 7.65 -40.82 -0.31 5.63 16 45 H 0.41 8.03 7.99 -40.82 -0.33 7.70 16 46 H 0.27 7.90 8.73 -40.82 -0.36 7.54 16 47 H 0.07 1.65 4.79 -51.93 -0.25 1.40 16 48 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.05 1.06 7.91 -51.93 -0.41 0.65 16 50 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.05 0.89 5.62 -51.93 -0.29 0.60 16 LS Contribution 401.88 15.07 6.06 6.06 Total: -1.00 -29.38 401.88 -8.62 -38.00 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -7.88 Total: 13.15 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -2.19 Total: -3.45 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.29 Total: -54.27 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: 0.15 Total: -19.43 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -4.47 Total: 19.93 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.38 -8.62 -38.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599969572.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.513 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds