Wall clock time and date at job start Wed Apr 1 2020 04:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.53000 * 109.47011 * 2 1 4 4 N 1.46898 * 109.47101 * 180.02562 * 3 2 1 5 5 C 1.46896 * 111.00125 * 293.95957 * 4 3 2 6 6 C 1.39831 * 111.00097 * 170.00325 * 4 3 2 7 7 C 1.38728 * 120.10802 * 60.27613 * 6 4 3 8 8 C 1.38202 * 119.99918 * 180.27882 * 7 6 4 9 9 C 1.38312 * 120.21459 * 359.72076 * 8 7 6 10 10 C 1.38198 * 120.20736 * 0.02562 * 9 8 7 11 11 C 1.38746 * 120.00074 * 0.02562 * 10 9 8 12 12 N 1.39885 * 120.10738 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99801 * 19.88351 * 12 11 10 14 14 O 1.21390 * 120.00318 * 5.69653 * 13 12 11 15 15 C 1.49326 * 119.99836 * 185.69359 * 13 12 11 16 16 O 1.21368 * 120.00208 * 359.97438 * 15 13 12 17 17 N 1.34780 * 119.99798 * 180.02562 * 15 13 12 18 18 C 1.46499 * 119.99957 * 180.02562 * 17 15 13 19 19 H 1.09007 * 109.47289 * 34.99578 * 18 17 15 20 20 C 1.50696 * 109.47246 * 154.99376 * 18 17 15 21 21 H 1.08000 * 120.00281 * 5.68796 * 20 18 17 22 22 C 1.37880 * 120.00298 * 185.68133 * 20 18 17 23 23 N 1.31513 * 120.00388 * 196.56099 * 22 20 18 24 24 Si 1.86806 * 119.99815 * 16.56180 * 22 20 18 25 25 H 1.48497 * 109.47132 * 179.97438 * 24 22 20 26 26 H 1.48505 * 109.46852 * 299.99949 * 24 22 20 27 27 H 1.48501 * 109.47044 * 59.99420 * 24 22 20 28 28 C 1.53003 * 109.47088 * 274.99858 * 18 17 15 29 29 C 1.52997 * 109.47239 * 66.17687 * 28 18 17 30 30 H 1.08998 * 109.46870 * 59.99625 * 1 2 3 31 31 H 1.08999 * 109.46625 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46568 * 299.99757 * 1 2 3 33 33 H 1.08997 * 109.46568 * 240.00243 * 2 1 3 34 34 H 1.08998 * 109.46870 * 120.00375 * 2 1 3 35 35 H 1.09003 * 109.46859 * 60.00476 * 3 2 1 36 36 H 1.08996 * 109.47366 * 300.00394 * 3 2 1 37 37 H 1.09003 * 109.47070 * 296.04516 * 5 4 3 38 38 H 1.09005 * 109.47771 * 56.04001 * 5 4 3 39 39 H 1.09002 * 109.47739 * 176.04752 * 5 4 3 40 40 H 1.07994 * 119.99456 * 359.97438 * 7 6 4 41 41 H 1.08006 * 119.89590 * 179.75203 * 8 7 6 42 42 H 1.08001 * 119.89436 * 180.02562 * 9 8 7 43 43 H 1.08003 * 120.00056 * 180.02562 * 10 9 8 44 44 H 0.96998 * 120.00381 * 199.88166 * 12 11 10 45 45 H 0.97001 * 120.00043 * 359.97438 * 17 15 13 46 46 H 0.96999 * 119.99570 * 354.92998 * 23 22 20 47 47 H 1.09002 * 109.46866 * 186.17741 * 28 18 17 48 48 H 1.09000 * 109.46839 * 306.17482 * 28 18 17 49 49 H 1.09006 * 109.47062 * 59.99836 * 29 28 18 50 50 H 1.08995 * 109.47491 * 180.02562 * 29 28 18 51 51 H 1.09002 * 109.47055 * 300.00350 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0361 0.8854 1.2523 6 6 4.0101 2.7282 -0.2273 7 6 3.7043 3.7588 0.6496 8 6 4.1960 5.0299 0.4203 9 6 4.9980 5.2782 -0.6789 10 6 5.3124 4.2568 -1.5551 11 6 4.8227 2.9776 -1.3339 12 7 5.1390 1.9422 -2.2197 13 6 6.2053 2.0562 -3.0362 14 8 6.9506 3.0087 -2.9321 15 6 6.4699 1.0106 -4.0690 16 8 5.7251 0.0579 -4.1729 17 7 7.5365 1.1243 -4.8851 18 6 7.7958 0.0988 -5.8987 19 1 6.8487 -0.2781 -6.2849 20 6 8.5953 0.6983 -7.0267 21 1 8.9602 1.7119 -6.9509 22 6 8.8611 -0.0473 -8.1557 23 7 9.8089 0.3306 -8.9853 24 14 7.8747 -1.5945 -8.5068 25 1 8.3513 -2.2089 -9.7719 26 1 8.0513 -2.5580 -7.3906 27 1 6.4371 -1.2460 -8.6371 28 6 8.5843 -1.0519 -5.2700 29 6 7.7130 -1.7586 -4.2297 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6768 1.9563 0.8901 36 1 1.6767 1.9564 -0.8899 37 1 3.7454 1.5257 2.0852 38 1 3.6305 -0.1149 1.4043 39 1 5.1234 0.8322 1.1974 40 1 3.0781 3.5688 1.5087 41 1 3.9536 5.8319 1.1019 42 1 5.3798 6.2733 -0.8528 43 1 5.9393 4.4543 -2.4121 44 1 4.5911 1.1423 -2.2464 45 1 8.1320 1.8854 -4.8019 46 1 10.2710 1.1715 -8.8431 47 1 8.8719 -1.7617 -6.0456 48 1 9.4790 -0.6583 -4.7877 49 1 6.8182 -2.1521 -4.7120 50 1 8.2748 -2.5780 -3.7814 51 1 7.4253 -1.0488 -3.4541 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599969572.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:45 Heat of formation + Delta-G solvation = -54.512921 kcal Electronic energy + Delta-G solvation = -31121.385061 eV Core-core repulsion = 27020.174423 eV Total energy + Delta-G solvation = -4101.210638 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.29123 -40.97871 -39.76096 -37.93265 -37.34277 -35.98733 -34.48858 -34.19607 -33.19142 -31.13614 -30.42503 -29.33663 -27.97742 -26.36270 -25.68279 -24.35238 -23.69177 -22.52083 -21.87580 -21.54481 -21.27265 -20.23855 -19.24682 -18.48786 -17.98004 -17.46090 -17.29081 -16.81420 -16.36131 -16.33338 -15.89041 -15.73174 -15.47492 -15.30619 -15.05719 -14.82227 -14.53523 -14.46245 -14.31378 -14.07776 -13.89801 -13.72245 -13.57074 -13.23604 -13.15535 -12.82674 -12.69439 -12.63282 -12.53890 -12.41799 -12.32359 -12.19822 -11.96739 -11.79259 -11.66090 -11.45102 -11.40740 -11.13386 -10.60208 -10.49695 -10.03365 -9.79581 -9.55352 -9.10167 -8.83242 -6.48106 -0.12717 0.28836 0.66937 1.27316 1.46969 1.52654 1.71523 2.08545 2.42404 2.62773 2.75788 2.77835 2.99372 3.38913 3.88649 3.98385 4.10142 4.13613 4.22845 4.28659 4.35911 4.37078 4.40954 4.45993 4.47855 4.49160 4.55384 4.64649 4.75651 4.78329 4.80995 4.91275 4.99366 5.07737 5.12342 5.13316 5.22437 5.23118 5.26072 5.30779 5.37403 5.41828 5.43299 5.50144 5.54441 5.59864 5.81128 5.92837 5.95156 6.00814 6.33106 6.44091 6.48870 6.70095 6.97054 7.29247 8.56936 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013166 B = 0.002768 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.241701 B =10114.205593 C =11494.012779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.062 3.938 4 N -0.521 5.521 5 C 0.029 3.971 6 C 0.056 3.944 7 C -0.125 4.125 8 C -0.122 4.122 9 C -0.103 4.103 10 C -0.155 4.155 11 C 0.145 3.855 12 N -0.618 5.618 13 C 0.510 3.490 14 O -0.519 6.519 15 C 0.499 3.501 16 O -0.538 6.538 17 N -0.669 5.669 18 C 0.251 3.749 19 H 0.037 0.963 20 C -0.619 4.619 21 H 0.036 0.964 22 C -0.004 4.004 23 N -0.925 5.925 24 Si 1.072 2.928 25 H -0.283 1.283 26 H -0.238 1.238 27 H -0.270 1.270 28 C -0.138 4.138 29 C -0.136 4.136 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.088 0.912 39 H 0.056 0.944 40 H 0.146 0.854 41 H 0.153 0.847 42 H 0.145 0.855 43 H 0.135 0.865 44 H 0.431 0.569 45 H 0.407 0.593 46 H 0.257 0.743 47 H 0.067 0.933 48 H 0.053 0.947 49 H 0.050 0.950 50 H 0.060 0.940 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.667 3.572 24.767 30.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.064 4.064 4 N -0.243 5.243 5 C -0.117 4.117 6 C -0.040 4.040 7 C -0.145 4.145 8 C -0.142 4.142 9 C -0.121 4.121 10 C -0.176 4.176 11 C 0.049 3.951 12 N -0.262 5.262 13 C 0.292 3.708 14 O -0.396 6.396 15 C 0.279 3.721 16 O -0.416 6.416 17 N -0.318 5.318 18 C 0.147 3.853 19 H 0.055 0.945 20 C -0.657 4.657 21 H 0.054 0.946 22 C -0.205 4.205 23 N -0.560 5.560 24 Si 0.893 3.107 25 H -0.209 1.209 26 H -0.162 1.162 27 H -0.195 1.195 28 C -0.177 4.177 29 C -0.193 4.193 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.163 0.837 41 H 0.171 0.829 42 H 0.163 0.837 43 H 0.153 0.847 44 H 0.271 0.729 45 H 0.243 0.757 46 H 0.066 0.934 47 H 0.085 0.915 48 H 0.071 0.929 49 H 0.069 0.931 50 H 0.079 0.921 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.605 1.911 23.259 29.233 hybrid contribution 0.542 2.229 1.027 2.513 sum -17.063 4.140 24.286 29.968 Atomic orbital electron populations 1.21709 0.94589 1.02284 1.02044 1.21543 0.96227 0.95342 1.02671 1.22267 0.84524 0.98196 1.01384 1.59440 1.09247 1.18346 1.37232 1.22494 1.00226 1.00712 0.88287 1.18512 1.00635 0.90763 0.94120 1.21641 1.00592 0.92994 0.99271 1.21378 0.97455 0.97292 0.98030 1.21364 0.97356 0.99207 0.94189 1.21649 1.02386 0.91341 1.02198 1.17955 0.98821 0.87594 0.90699 1.42981 1.27590 1.20915 1.34757 1.20343 0.81450 0.86500 0.82498 1.90664 1.46710 1.32435 1.69769 1.19954 0.82716 0.86395 0.83065 1.90725 1.47474 1.32530 1.70901 1.46032 1.25988 1.26725 1.33084 1.19007 0.95271 0.85887 0.85129 0.94522 1.22250 1.38419 1.01446 1.03603 0.94592 1.26944 0.95081 1.05961 0.92495 1.70981 1.20425 1.22440 1.42141 0.83739 0.75469 0.73741 0.77757 1.20897 1.16190 1.19504 1.22279 0.98816 0.97759 0.98809 1.21799 0.99286 0.99782 0.98476 0.92963 0.92015 0.91973 0.92278 0.91001 0.92926 0.91652 0.93688 0.89336 0.92530 0.83675 0.82886 0.83721 0.84732 0.72885 0.75734 0.93358 0.91495 0.92866 0.93132 0.92107 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 71.99 0.71 -0.87 16 2 C -0.12 -1.55 5.86 30.60 0.18 -1.37 16 3 C 0.06 0.90 4.55 86.30 0.39 1.29 16 4 N -0.52 -9.32 4.01 -719.47 -2.88 -12.20 16 5 C 0.03 0.42 9.19 127.69 1.17 1.60 16 6 C 0.06 1.15 4.70 38.30 0.18 1.33 16 7 C -0.12 -1.99 8.66 22.38 0.19 -1.80 16 8 C -0.12 -1.87 10.04 22.28 0.22 -1.64 16 9 C -0.10 -1.99 10.04 22.28 0.22 -1.77 16 10 C -0.16 -4.07 8.78 22.38 0.20 -3.87 16 11 C 0.15 3.79 6.52 38.29 0.25 4.04 16 12 N -0.62 -17.79 5.30 -304.39 -1.61 -19.40 16 13 C 0.51 17.30 7.73 87.23 0.67 17.97 16 14 O -0.52 -18.90 13.39 -3.37 -0.05 -18.95 16 15 C 0.50 19.06 6.51 87.23 0.57 19.63 16 16 O -0.54 -21.50 13.62 -3.30 -0.04 -21.55 16 17 N -0.67 -27.97 5.03 -447.54 -2.25 -30.22 16 18 C 0.25 11.74 1.81 44.25 0.08 11.82 16 19 H 0.04 1.81 6.25 -2.38 -0.01 1.80 16 20 C -0.62 -33.93 9.01 25.60 0.23 -33.70 16 21 H 0.04 2.13 7.96 -2.91 -0.02 2.10 16 22 C 0.00 -0.23 5.31 84.66 0.45 0.22 16 23 N -0.93 -56.03 13.70 21.45 0.29 -55.74 16 24 Si 1.07 48.84 26.27 68.60 1.80 50.64 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 26 H -0.24 -9.63 5.70 99.48 0.57 -9.06 16 27 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 28 C -0.14 -5.87 5.27 30.59 0.16 -5.71 16 29 C -0.14 -5.01 8.54 71.98 0.61 -4.39 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 0.81 6.47 -2.39 -0.02 0.80 16 35 H 0.05 0.61 7.49 -2.39 -0.02 0.59 16 36 H 0.06 1.09 8.06 -2.39 -0.02 1.07 16 37 H 0.04 0.53 7.33 -2.39 -0.02 0.51 16 38 H 0.09 1.07 6.30 -2.38 -0.02 1.05 16 39 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.15 1.61 7.14 -2.91 -0.02 1.59 16 41 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 43 H 0.14 4.13 5.44 -2.91 -0.02 4.12 16 44 H 0.43 11.88 7.65 -92.71 -0.71 11.17 16 45 H 0.41 16.72 7.99 -92.71 -0.74 15.97 16 46 H 0.26 15.72 8.73 -92.71 -0.81 14.91 16 47 H 0.07 2.92 4.79 -2.39 -0.01 2.91 16 48 H 0.05 2.24 8.14 -2.39 -0.02 2.23 16 49 H 0.05 1.88 7.91 -2.38 -0.02 1.86 16 50 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.04 1.63 5.62 -2.39 -0.01 1.62 16 Total: -1.00 -64.79 401.88 1.10 -63.69 By element: Atomic # 1 Polarization: 41.61 SS G_CDS: -0.66 Total: 40.95 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 6.50 Total: 2.77 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -6.45 Total: -117.55 kcal Atomic # 8 Polarization: -40.40 SS G_CDS: -0.09 Total: -40.49 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 1.80 Total: 50.64 kcal Total: -64.79 1.10 -63.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599969572.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.177 kcal (2) G-P(sol) polarization free energy of solvation -64.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds