Wall clock time and date at job start Wed Apr 1 2020 05:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47088 * 2 1 4 4 N 1.46501 * 109.46805 * 180.02562 * 3 2 1 5 5 C 1.34780 * 119.99792 * 180.02562 * 4 3 2 6 6 O 1.21603 * 120.00142 * 359.97438 * 5 4 3 7 7 C 1.47432 * 120.00036 * 179.97438 * 5 4 3 8 8 C 1.39732 * 120.20548 * 354.11248 * 7 5 4 9 9 C 1.37747 * 119.92395 * 179.97438 * 8 7 5 10 10 C 1.38608 * 120.35704 * 359.97438 * 9 8 7 11 11 C 1.37962 * 120.42058 * 0.02562 * 10 9 8 12 12 C 1.38956 * 120.05915 * 359.97438 * 11 10 9 13 13 N 1.38879 * 120.17046 * 179.97438 * 12 11 10 14 14 C 1.46495 * 120.00025 * 5.56074 * 13 12 11 15 15 C 1.50703 * 109.47186 * 179.97438 * 14 13 12 16 16 O 1.21285 * 119.99543 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00255 * 180.02562 * 15 14 13 18 18 C 1.46503 * 119.99923 * 0.02562 * 17 15 14 19 19 C 1.52996 * 109.47240 * 89.99962 * 18 17 15 20 20 C 1.46498 * 119.99982 * 180.02562 * 17 15 14 21 21 C 1.50704 * 109.47168 * 89.99869 * 20 17 15 22 22 H 1.07996 * 120.00292 * 0.02562 * 21 20 17 23 23 C 1.37875 * 119.99864 * 179.97438 * 21 20 17 24 24 N 1.31514 * 120.00168 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00038 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47247 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47232 * 119.99997 * 25 23 21 28 28 H 1.48493 * 109.47570 * 240.00190 * 25 23 21 29 29 H 1.09009 * 109.47062 * 300.00090 * 1 2 3 30 30 H 1.09000 * 109.47437 * 60.00021 * 1 2 3 31 31 H 1.08997 * 109.47768 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46608 * 239.99920 * 2 1 3 33 33 H 1.08999 * 109.46943 * 120.00165 * 2 1 3 34 34 H 1.09001 * 109.47355 * 59.99752 * 3 2 1 35 35 H 1.08999 * 109.47363 * 299.99908 * 3 2 1 36 36 H 0.96994 * 120.00112 * 359.97438 * 4 3 2 37 37 H 1.08001 * 120.04030 * 359.97270 * 8 7 5 38 38 H 1.08003 * 119.82108 * 180.02562 * 9 8 7 39 39 H 1.07997 * 119.78994 * 180.02562 * 10 9 8 40 40 H 1.07997 * 119.96847 * 179.72142 * 11 10 9 41 41 H 0.97003 * 119.99981 * 185.56052 * 13 12 11 42 42 H 1.08996 * 109.47525 * 299.99844 * 14 13 12 43 43 H 1.08998 * 109.47256 * 60.00378 * 14 13 12 44 44 H 1.09001 * 109.46847 * 210.00452 * 18 17 15 45 45 H 1.09002 * 109.47083 * 329.99741 * 18 17 15 46 46 H 1.08995 * 109.47507 * 180.02562 * 19 18 17 47 47 H 1.09003 * 109.46901 * 300.00278 * 19 18 17 48 48 H 1.08997 * 109.46814 * 59.99996 * 19 18 17 49 49 H 1.09005 * 109.47004 * 209.99976 * 20 17 15 50 50 H 1.09000 * 109.47169 * 329.99556 * 20 17 15 51 51 H 0.97001 * 120.00535 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1789 2.6096 -0.0002 6 8 3.5709 3.6628 0.0002 7 6 5.6532 2.6096 -0.0003 8 6 6.3562 1.4083 0.1231 9 6 7.7337 1.4150 0.1219 10 6 8.4283 2.6081 -0.0018 11 6 7.7489 3.8025 -0.1245 12 6 6.3594 3.8160 -0.1253 13 7 5.6731 5.0171 -0.2482 14 6 6.4088 6.2587 -0.4994 15 6 5.4383 7.4080 -0.5906 16 8 4.2491 7.2095 -0.4583 17 7 5.8917 8.6564 -0.8192 18 6 7.3281 8.8961 -0.9795 19 6 7.7055 8.7639 -2.4563 20 6 4.9483 9.7737 -0.9073 21 6 4.7456 10.3692 0.4622 22 1 5.2676 9.9570 1.3130 23 6 3.8944 11.4411 0.6287 24 7 3.2591 11.9434 -0.4075 25 14 3.6426 12.1788 2.3262 26 1 4.4653 11.4372 3.3153 27 1 4.0536 13.6058 2.3118 28 1 2.2091 12.0804 2.7011 29 1 -0.3634 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9899 0.6024 -0.0006 37 1 5.8202 0.4757 0.2194 38 1 8.2754 0.4855 0.2169 39 1 9.5082 2.6026 -0.0021 40 1 8.2974 4.7283 -0.2159 41 1 4.7065 5.0338 -0.1677 42 1 7.1088 6.4378 0.3167 43 1 6.9581 6.1723 -1.4368 44 1 7.5700 9.9002 -0.6311 45 1 7.8860 8.1646 -0.3950 46 1 8.7742 8.9418 -2.5756 47 1 7.4635 7.7598 -2.8046 48 1 7.1475 9.4955 -3.0407 49 1 5.3473 10.5341 -1.5788 50 1 3.9940 9.4140 -1.2920 51 1 2.6600 12.6973 -0.2903 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610675778.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:41 Heat of formation + Delta-G solvation = -46.767333 kcal Electronic energy + Delta-G solvation = -30444.243345 eV Core-core repulsion = 26343.368582 eV Total energy + Delta-G solvation = -4100.874764 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.51382 -39.22465 -38.36940 -36.14549 -35.53258 -34.95061 -32.96326 -32.78959 -31.14089 -30.20745 -29.92070 -27.78723 -26.62734 -25.73922 -23.72669 -23.05946 -22.68863 -22.00054 -21.25646 -20.68447 -18.51666 -18.02481 -17.20170 -16.44935 -16.34378 -16.01773 -15.96765 -15.79293 -15.29287 -15.11647 -14.88294 -14.56661 -14.20254 -14.11798 -13.73794 -13.52570 -13.45871 -13.30253 -13.06355 -12.86807 -12.64630 -12.43268 -12.34824 -12.07899 -12.00896 -11.98297 -11.61084 -11.48635 -11.30334 -11.21523 -11.19021 -10.90093 -10.77782 -10.55359 -10.16801 -10.11991 -9.76351 -9.61997 -9.28117 -9.02442 -9.00275 -8.42963 -7.71379 -7.39716 -6.03693 -4.08266 0.89423 1.55393 2.89524 3.06232 3.30510 3.31171 3.38796 3.39141 3.44512 3.89715 4.03736 4.45886 4.49324 4.64815 4.68001 4.69576 4.89039 4.94490 4.95698 5.20970 5.26704 5.31065 5.31360 5.32378 5.33680 5.38195 5.47325 5.48486 5.55426 5.61990 5.70090 5.76104 5.78863 5.80664 5.90239 6.00136 6.06721 6.20687 6.22973 6.32074 6.44600 6.46126 6.70197 7.00881 7.27539 7.42553 7.44864 7.52622 7.92551 7.95572 8.23301 8.33173 8.44057 8.87938 9.03035 9.56741 11.04536 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009125 B = 0.002769 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.675783 B =10109.406063 C =12279.878086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.116 3.884 4 N -0.731 5.731 5 C 0.564 3.436 6 O -0.532 6.532 7 C -0.234 4.234 8 C -0.033 4.033 9 C -0.202 4.202 10 C -0.039 4.039 11 C -0.216 4.216 12 C 0.285 3.715 13 N -0.705 5.705 14 C 0.093 3.907 15 C 0.498 3.502 16 O -0.527 6.527 17 N -0.593 5.593 18 C 0.104 3.896 19 C -0.170 4.170 20 C 0.246 3.754 21 C -0.526 4.526 22 H 0.058 0.942 23 C 0.061 3.939 24 N -0.894 5.894 25 Si 0.898 3.102 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.283 1.283 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.398 0.602 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.432 0.568 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.050 0.950 48 H 0.062 0.938 49 H 0.034 0.966 50 H 0.044 0.956 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.175 -25.050 -1.603 26.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C -0.007 4.007 4 N -0.383 5.383 5 C 0.354 3.646 6 O -0.410 6.410 7 C -0.243 4.243 8 C -0.052 4.052 9 C -0.223 4.223 10 C -0.059 4.059 11 C -0.239 4.239 12 C 0.171 3.829 13 N -0.344 5.344 14 C -0.036 4.036 15 C 0.283 3.717 16 O -0.403 6.403 17 N -0.325 5.325 18 C -0.020 4.020 19 C -0.229 4.229 20 C 0.127 3.873 21 C -0.564 4.564 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.533 5.533 25 Si 0.726 3.274 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.209 1.209 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.233 0.767 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.146 0.854 41 H 0.285 0.715 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.052 0.948 50 H 0.062 0.938 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.912 -23.984 -1.626 25.307 hybrid contribution -0.097 0.150 0.938 0.954 sum 7.815 -23.834 -0.689 25.092 Atomic orbital electron populations 1.21683 0.94486 1.02059 1.02595 1.21730 0.97096 0.95876 1.02558 1.21426 0.79347 0.97027 1.02900 1.45797 1.07271 1.08409 1.76869 1.18231 0.87058 0.83619 0.75690 1.90568 1.69455 1.30443 1.50497 1.19181 0.91998 0.93259 1.19869 1.20931 0.94459 0.95549 0.94300 1.20708 0.93727 0.98133 1.09722 1.21038 0.99608 0.91873 0.93339 1.20724 0.91746 0.99280 1.12148 1.17816 0.91261 0.85247 0.88533 1.45638 1.12911 1.02508 1.73308 1.21327 0.95107 0.85020 1.02134 1.20125 0.89163 0.84041 0.78371 1.90724 1.16578 1.83522 1.49501 1.48213 1.07447 1.07830 1.69059 1.21466 0.81953 1.02872 0.95744 1.22233 1.01072 1.02037 0.97510 1.19311 0.88393 0.82225 0.97348 1.21458 1.26496 1.14491 0.94000 0.92411 1.24936 0.95359 0.96732 0.97098 1.69941 1.28885 1.24930 1.29590 0.86437 0.78151 0.78638 0.84164 1.19806 1.20966 1.20858 0.92233 0.92218 0.92245 0.91365 0.91377 0.91264 0.91261 0.76698 0.86266 0.86133 0.85883 0.85437 0.71528 0.89576 0.89611 0.89636 0.91725 0.91997 0.93075 0.91913 0.94796 0.93822 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.13 -0.88 6.05 -26.73 -0.16 -1.04 16 3 C 0.12 1.17 5.67 -4.04 -0.02 1.14 16 4 N -0.73 -7.68 5.50 -61.38 -0.34 -8.02 16 5 C 0.56 8.34 7.75 -12.51 -0.10 8.24 16 6 O -0.53 -10.37 13.65 5.27 0.07 -10.30 16 7 C -0.23 -3.13 5.89 -104.80 -0.62 -3.75 16 8 C -0.03 -0.32 9.52 -39.20 -0.37 -0.69 16 9 C -0.20 -1.78 10.02 -39.62 -0.40 -2.18 16 10 C -0.04 -0.37 10.03 -39.55 -0.40 -0.76 16 11 C -0.22 -2.51 9.30 -39.42 -0.37 -2.87 16 12 C 0.29 4.16 6.65 -83.61 -0.56 3.61 16 13 N -0.71 -12.38 5.56 -59.62 -0.33 -12.71 16 14 C 0.09 1.50 3.97 -5.19 -0.02 1.47 16 15 C 0.50 10.80 7.74 -10.99 -0.09 10.71 16 16 O -0.53 -14.08 15.25 5.55 0.08 -14.00 16 17 N -0.59 -12.63 2.46 -175.05 -0.43 -13.06 16 18 C 0.10 1.63 5.93 -4.04 -0.02 1.60 16 19 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16 20 C 0.25 6.52 5.16 -5.19 -0.03 6.49 16 21 C -0.53 -15.14 9.39 -34.44 -0.32 -15.46 16 22 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 23 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 25 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 29 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.40 2.86 6.54 -40.82 -0.27 2.59 16 37 H 0.12 0.76 6.45 -52.49 -0.34 0.42 16 38 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.13 1.29 6.72 -52.49 -0.35 0.94 16 41 H 0.43 9.03 3.95 -40.94 -0.16 8.87 16 42 H 0.09 1.20 6.99 -51.93 -0.36 0.84 16 43 H 0.09 1.16 7.17 -51.93 -0.37 0.79 16 44 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 45 H 0.06 0.82 6.44 -51.93 -0.33 0.48 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.64 7.22 -51.93 -0.37 0.26 16 48 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 50 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 51 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 415.78 15.07 6.27 6.27 Total: -1.00 -36.75 415.78 -9.76 -46.52 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -7.98 Total: 8.51 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -2.82 Total: 5.76 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -0.36 Total: -60.03 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: 0.16 Total: -24.30 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -36.75 -9.76 -46.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610675778.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.252 kcal (2) G-P(sol) polarization free energy of solvation -36.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds