Wall clock time and date at job start Wed Apr 1 2020 05:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47088 * 2 1 4 4 N 1.46501 * 109.46805 * 180.02562 * 3 2 1 5 5 C 1.34780 * 119.99792 * 180.02562 * 4 3 2 6 6 O 1.21603 * 120.00142 * 359.97438 * 5 4 3 7 7 C 1.47432 * 120.00036 * 179.97438 * 5 4 3 8 8 C 1.39732 * 120.20548 * 354.11248 * 7 5 4 9 9 C 1.37747 * 119.92395 * 179.97438 * 8 7 5 10 10 C 1.38608 * 120.35704 * 359.97438 * 9 8 7 11 11 C 1.37962 * 120.42058 * 0.02562 * 10 9 8 12 12 C 1.38956 * 120.05915 * 359.97438 * 11 10 9 13 13 N 1.38879 * 120.17046 * 179.97438 * 12 11 10 14 14 C 1.46495 * 120.00025 * 5.56074 * 13 12 11 15 15 C 1.50703 * 109.47186 * 179.97438 * 14 13 12 16 16 O 1.21285 * 119.99543 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00255 * 180.02562 * 15 14 13 18 18 C 1.46503 * 119.99923 * 0.02562 * 17 15 14 19 19 C 1.52996 * 109.47240 * 89.99962 * 18 17 15 20 20 C 1.46498 * 119.99982 * 180.02562 * 17 15 14 21 21 C 1.50704 * 109.47168 * 89.99869 * 20 17 15 22 22 H 1.07996 * 120.00292 * 0.02562 * 21 20 17 23 23 C 1.37875 * 119.99864 * 179.97438 * 21 20 17 24 24 N 1.31514 * 120.00168 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00038 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47247 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47232 * 119.99997 * 25 23 21 28 28 H 1.48493 * 109.47570 * 240.00190 * 25 23 21 29 29 H 1.09009 * 109.47062 * 300.00090 * 1 2 3 30 30 H 1.09000 * 109.47437 * 60.00021 * 1 2 3 31 31 H 1.08997 * 109.47768 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46608 * 239.99920 * 2 1 3 33 33 H 1.08999 * 109.46943 * 120.00165 * 2 1 3 34 34 H 1.09001 * 109.47355 * 59.99752 * 3 2 1 35 35 H 1.08999 * 109.47363 * 299.99908 * 3 2 1 36 36 H 0.96994 * 120.00112 * 359.97438 * 4 3 2 37 37 H 1.08001 * 120.04030 * 359.97270 * 8 7 5 38 38 H 1.08003 * 119.82108 * 180.02562 * 9 8 7 39 39 H 1.07997 * 119.78994 * 180.02562 * 10 9 8 40 40 H 1.07997 * 119.96847 * 179.72142 * 11 10 9 41 41 H 0.97003 * 119.99981 * 185.56052 * 13 12 11 42 42 H 1.08996 * 109.47525 * 299.99844 * 14 13 12 43 43 H 1.08998 * 109.47256 * 60.00378 * 14 13 12 44 44 H 1.09001 * 109.46847 * 210.00452 * 18 17 15 45 45 H 1.09002 * 109.47083 * 329.99741 * 18 17 15 46 46 H 1.08995 * 109.47507 * 180.02562 * 19 18 17 47 47 H 1.09003 * 109.46901 * 300.00278 * 19 18 17 48 48 H 1.08997 * 109.46814 * 59.99996 * 19 18 17 49 49 H 1.09005 * 109.47004 * 209.99976 * 20 17 15 50 50 H 1.09000 * 109.47169 * 329.99556 * 20 17 15 51 51 H 0.97001 * 120.00535 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1789 2.6096 -0.0002 6 8 3.5709 3.6628 0.0002 7 6 5.6532 2.6096 -0.0003 8 6 6.3562 1.4083 0.1231 9 6 7.7337 1.4150 0.1219 10 6 8.4283 2.6081 -0.0018 11 6 7.7489 3.8025 -0.1245 12 6 6.3594 3.8160 -0.1253 13 7 5.6731 5.0171 -0.2482 14 6 6.4088 6.2587 -0.4994 15 6 5.4383 7.4080 -0.5906 16 8 4.2491 7.2095 -0.4583 17 7 5.8917 8.6564 -0.8192 18 6 7.3281 8.8961 -0.9795 19 6 7.7055 8.7639 -2.4563 20 6 4.9483 9.7737 -0.9073 21 6 4.7456 10.3692 0.4622 22 1 5.2676 9.9570 1.3130 23 6 3.8944 11.4411 0.6287 24 7 3.2591 11.9434 -0.4075 25 14 3.6426 12.1788 2.3262 26 1 4.4653 11.4372 3.3153 27 1 4.0536 13.6058 2.3118 28 1 2.2091 12.0804 2.7011 29 1 -0.3634 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9899 0.6024 -0.0006 37 1 5.8202 0.4757 0.2194 38 1 8.2754 0.4855 0.2169 39 1 9.5082 2.6026 -0.0021 40 1 8.2974 4.7283 -0.2159 41 1 4.7065 5.0338 -0.1677 42 1 7.1088 6.4378 0.3167 43 1 6.9581 6.1723 -1.4368 44 1 7.5700 9.9002 -0.6311 45 1 7.8860 8.1646 -0.3950 46 1 8.7742 8.9418 -2.5756 47 1 7.4635 7.7598 -2.8046 48 1 7.1475 9.4955 -3.0407 49 1 5.3473 10.5341 -1.5788 50 1 3.9940 9.4140 -1.2920 51 1 2.6600 12.6973 -0.2903 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610675778.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:40 Heat of formation + Delta-G solvation = -72.774031 kcal Electronic energy + Delta-G solvation = -30445.371080 eV Core-core repulsion = 26343.368582 eV Total energy + Delta-G solvation = -4102.002499 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.56713 -40.80806 -39.35662 -37.25839 -36.95228 -36.13532 -34.93502 -33.78838 -31.98806 -31.70275 -31.02268 -29.37073 -27.76975 -26.96014 -24.89377 -24.53824 -24.08030 -22.79343 -22.16869 -21.71812 -20.02820 -19.05941 -18.66217 -18.30521 -17.61291 -17.23575 -17.04717 -16.83603 -16.65725 -16.60138 -16.02352 -15.73431 -15.50475 -15.08724 -14.93100 -14.76714 -14.64819 -14.37580 -14.22187 -14.01258 -13.82231 -13.64928 -13.54105 -13.32224 -13.21317 -13.07450 -12.99749 -12.78199 -12.71581 -12.53389 -12.21370 -12.12873 -12.01105 -11.93883 -11.79307 -11.73749 -11.12276 -10.89468 -10.74262 -10.69011 -10.28908 -9.82782 -9.53731 -8.40802 -8.26749 -6.41578 0.03978 0.73230 1.32085 1.35468 1.46860 1.66178 1.90042 2.03045 2.16935 2.35160 2.66823 3.02868 3.03979 3.51624 3.79436 3.86844 3.95790 4.02990 4.04487 4.20098 4.24477 4.27530 4.30390 4.41855 4.53717 4.57155 4.60912 4.62461 4.68390 4.72940 4.84148 4.90680 4.95859 5.02177 5.04779 5.10143 5.16590 5.20424 5.22225 5.31080 5.38095 5.44879 5.50442 5.52715 5.68910 5.78347 5.96272 6.01230 6.29992 6.53454 6.62832 6.68451 6.78011 7.21030 7.29865 7.36107 8.80891 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009125 B = 0.002769 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.675783 B =10109.406063 C =12279.878086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C 0.114 3.886 4 N -0.711 5.711 5 C 0.552 3.448 6 O -0.591 6.591 7 C -0.256 4.256 8 C -0.030 4.030 9 C -0.191 4.191 10 C -0.032 4.032 11 C -0.223 4.223 12 C 0.252 3.748 13 N -0.735 5.735 14 C 0.112 3.888 15 C 0.486 3.514 16 O -0.592 6.592 17 N -0.596 5.596 18 C 0.095 3.905 19 C -0.162 4.162 20 C 0.262 3.738 21 C -0.542 4.542 22 H 0.053 0.947 23 C 0.006 3.994 24 N -0.928 5.928 25 Si 0.969 3.031 26 H -0.267 1.267 27 H -0.265 1.265 28 H -0.284 1.284 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.416 0.584 37 H 0.152 0.848 38 H 0.157 0.843 39 H 0.159 0.841 40 H 0.142 0.858 41 H 0.414 0.586 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.078 0.922 45 H 0.105 0.895 46 H 0.101 0.899 47 H 0.058 0.942 48 H 0.037 0.963 49 H 0.028 0.972 50 H -0.008 1.008 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.036 -28.117 -0.621 30.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.010 4.010 4 N -0.364 5.364 5 C 0.344 3.656 6 O -0.473 6.473 7 C -0.265 4.265 8 C -0.049 4.049 9 C -0.211 4.211 10 C -0.051 4.051 11 C -0.246 4.246 12 C 0.142 3.858 13 N -0.374 5.374 14 C -0.016 4.016 15 C 0.274 3.726 16 O -0.473 6.473 17 N -0.327 5.327 18 C -0.027 4.027 19 C -0.220 4.220 20 C 0.140 3.860 21 C -0.581 4.581 22 H 0.071 0.929 23 C -0.193 4.193 24 N -0.568 5.568 25 Si 0.793 3.207 26 H -0.192 1.192 27 H -0.189 1.189 28 H -0.210 1.210 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.255 0.745 37 H 0.170 0.830 38 H 0.175 0.825 39 H 0.177 0.823 40 H 0.160 0.840 41 H 0.262 0.738 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.096 0.904 45 H 0.123 0.877 46 H 0.120 0.880 47 H 0.077 0.923 48 H 0.057 0.943 49 H 0.046 0.954 50 H 0.010 0.990 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.883 -27.135 -0.657 29.630 hybrid contribution -1.246 0.967 0.597 1.687 sum 10.637 -26.168 -0.061 28.247 Atomic orbital electron populations 1.21712 0.94383 1.02992 1.01935 1.21674 0.97048 0.93128 1.04105 1.21476 0.79177 0.99389 1.00956 1.45669 1.07443 1.08190 1.75075 1.18750 0.88183 0.83663 0.75041 1.90551 1.70712 1.32656 1.53429 1.19359 0.91130 0.94623 1.21370 1.21302 0.95287 0.95266 0.93032 1.21220 0.93323 0.99536 1.07019 1.21514 1.01423 0.91022 0.91168 1.20991 0.90371 1.01118 1.12093 1.18255 0.92650 0.84532 0.90384 1.45690 1.12280 1.03778 1.75676 1.21275 0.93344 0.82408 1.04554 1.21191 0.89390 0.85246 0.76750 1.90688 1.19762 1.84616 1.52234 1.48232 1.09244 1.06646 1.68593 1.21871 0.78614 1.03795 0.98403 1.22169 1.03152 1.01775 0.94889 1.18739 0.87626 0.83429 0.96167 1.21715 1.26890 1.14878 0.94599 0.92907 1.25886 0.94845 0.97172 1.01378 1.70060 1.29388 1.25471 1.31896 0.85345 0.77839 0.78539 0.78940 1.19166 1.18949 1.20952 0.92939 0.92984 0.90409 0.89772 0.89684 0.93275 0.93401 0.74496 0.83034 0.82493 0.82350 0.84039 0.73764 0.86929 0.86559 0.90389 0.87688 0.88007 0.92307 0.94346 0.95409 0.98998 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 71.98 0.71 -1.14 16 2 C -0.12 -1.46 6.05 30.59 0.19 -1.27 16 3 C 0.11 2.41 5.67 86.38 0.49 2.90 16 4 N -0.71 -15.03 5.50 -466.36 -2.57 -17.60 16 5 C 0.55 17.16 7.75 86.66 0.67 17.83 16 6 O -0.59 -25.35 13.65 -4.04 -0.06 -25.41 16 7 C -0.26 -6.73 5.89 -19.98 -0.12 -6.85 16 8 C -0.03 -0.48 9.52 22.51 0.21 -0.27 16 9 C -0.19 -2.41 10.02 22.24 0.22 -2.19 16 10 C -0.03 -0.45 10.03 22.29 0.22 -0.23 16 11 C -0.22 -4.54 9.30 22.38 0.21 -4.33 16 12 C 0.25 7.26 6.65 38.71 0.26 7.52 16 13 N -0.74 -26.88 5.56 -342.55 -1.90 -28.78 16 14 C 0.11 3.59 3.97 85.64 0.34 3.93 16 15 C 0.49 22.18 7.74 87.66 0.68 22.86 16 16 O -0.59 -34.48 15.25 -3.04 -0.05 -34.53 16 17 N -0.60 -26.40 2.46 -826.14 -2.03 -28.43 16 18 C 0.09 2.88 5.93 86.38 0.51 3.39 16 19 C -0.16 -3.96 10.24 71.98 0.74 -3.22 16 20 C 0.26 14.80 5.16 85.63 0.44 15.24 16 21 C -0.54 -32.58 9.39 25.60 0.24 -32.34 16 22 H 0.05 3.15 7.81 -2.91 -0.02 3.12 16 23 C 0.01 0.36 5.46 84.65 0.46 0.83 16 24 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16 25 Si 0.97 46.71 29.54 68.60 2.03 48.74 16 26 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 27 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 28 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 29 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.42 5.21 6.54 -92.71 -0.61 4.61 16 37 H 0.15 1.30 6.45 -2.91 -0.02 1.28 16 38 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 39 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 40 H 0.14 2.35 6.72 -2.91 -0.02 2.33 16 41 H 0.41 18.79 3.95 -94.61 -0.37 18.42 16 42 H 0.11 2.94 6.99 -2.39 -0.02 2.92 16 43 H 0.12 2.94 7.17 -2.39 -0.02 2.92 16 44 H 0.08 2.49 8.07 -2.39 -0.02 2.47 16 45 H 0.11 2.34 6.44 -2.39 -0.02 2.33 16 46 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.06 1.35 7.22 -2.39 -0.02 1.34 16 48 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.03 1.58 8.07 -2.38 -0.02 1.56 16 50 H -0.01 -0.54 7.42 -2.39 -0.02 -0.55 16 51 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -90.98 415.78 2.16 -88.82 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: -0.03 Total: 32.36 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: 6.48 Total: 22.66 kcal Atomic # 7 Polarization: -126.43 SS G_CDS: -6.22 Total: -132.65 kcal Atomic # 8 Polarization: -59.83 SS G_CDS: -0.10 Total: -59.93 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -90.98 2.16 -88.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610675778.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.047 kcal (2) G-P(sol) polarization free energy of solvation -90.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds