Wall clock time and date at job start Wed Apr 1 2020 04:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99771 * 2 1 4 4 N 1.46498 * 109.46725 * 125.00226 * 3 2 1 5 5 C 1.46503 * 119.99991 * 269.99462 * 4 3 2 6 6 C 1.53001 * 109.47455 * 270.00498 * 5 4 3 7 7 C 1.50700 * 109.47243 * 179.97438 * 6 5 4 8 8 C 1.34510 * 125.79098 * 89.99633 * 7 6 5 9 9 C 1.41377 * 106.84202 * 180.02562 * 8 7 6 10 10 C 1.34507 * 106.84374 * 359.97438 * 9 8 7 11 11 O 1.34298 * 125.78647 * 269.69223 * 7 6 5 12 12 C 1.34778 * 120.00118 * 90.00037 * 4 3 2 13 13 O 1.21593 * 119.99912 * 180.02562 * 12 4 3 14 14 N 1.34767 * 120.00119 * 359.97438 * 12 4 3 15 15 C 1.46497 * 120.00147 * 180.02562 * 14 12 4 16 16 C 1.53349 * 109.42224 * 275.12789 * 15 14 12 17 17 C 1.53189 * 109.15350 * 178.67121 * 16 15 14 18 18 N 1.46931 * 108.89061 * 54.57922 * 17 16 15 19 19 C 1.36938 * 120.62972 * 126.29441 * 18 17 16 20 20 H 1.08005 * 120.00173 * 331.83979 * 19 18 17 21 21 C 1.38813 * 119.99936 * 151.83343 * 19 18 17 22 22 N 1.31618 * 120.00004 * 343.08512 * 21 19 18 23 23 Si 1.86806 * 119.99953 * 163.08402 * 21 19 18 24 24 H 1.48500 * 109.46925 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46793 * 120.00276 * 23 21 19 26 26 H 1.48498 * 109.46814 * 240.00176 * 23 21 19 27 27 C 1.46927 * 118.74004 * 306.32424 * 18 17 16 28 28 C 1.53047 * 109.46203 * 155.00199 * 15 14 12 29 29 H 1.08001 * 119.99908 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00060 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99908 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.47303 * 4.99781 * 3 2 1 33 33 H 1.09003 * 109.47179 * 244.99892 * 3 2 1 34 34 H 1.09001 * 109.46794 * 30.00693 * 5 4 3 35 35 H 1.09005 * 109.47371 * 149.99938 * 5 4 3 36 36 H 1.09002 * 109.46420 * 299.99579 * 6 5 4 37 37 H 1.08993 * 109.46986 * 59.99705 * 6 5 4 38 38 H 1.08004 * 126.57735 * 359.96653 * 8 7 6 39 39 H 1.08001 * 126.58109 * 179.97438 * 9 8 7 40 40 H 1.08000 * 125.79662 * 180.02562 * 10 9 8 41 41 H 0.97002 * 120.00429 * 0.02562 * 14 12 4 42 42 H 1.08997 * 109.46024 * 35.03189 * 15 14 12 43 43 H 1.09001 * 109.68292 * 58.70764 * 16 15 14 44 44 H 1.08994 * 109.47524 * 298.51588 * 16 15 14 45 45 H 1.09000 * 109.58714 * 294.72587 * 17 16 15 46 46 H 1.09003 * 109.58688 * 174.43867 * 17 16 15 47 47 H 0.96996 * 119.99787 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.58255 * 173.39566 * 27 18 17 49 49 H 1.09000 * 109.58150 * 293.67300 * 27 18 17 50 50 H 1.09000 * 109.49464 * 61.43529 * 28 15 14 51 51 H 1.08999 * 109.52117 * 301.35281 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5588 1.8649 2.4249 6 6 2.8486 3.3662 2.4813 7 6 2.4006 3.9146 3.8116 8 6 3.1536 3.9947 4.9233 9 6 2.3408 4.5675 5.9282 10 6 1.1398 4.8037 5.3705 11 8 1.1837 4.4115 4.0866 12 6 4.2497 0.8661 0.9824 13 8 5.0216 0.8879 1.9216 14 7 4.6496 0.3754 -0.2074 15 6 6.0146 -0.1314 -0.3692 16 6 6.9560 1.0344 -0.6956 17 6 8.3863 0.5027 -0.8308 18 7 8.3991 -0.5813 -1.8226 19 6 9.2613 -0.5439 -2.8858 20 1 9.5970 0.4057 -3.2758 21 6 9.7039 -1.7265 -3.4624 22 7 9.5793 -2.8633 -2.8108 23 14 10.4763 -1.7046 -5.1631 24 1 10.5002 -0.3119 -5.6779 25 1 11.8643 -2.2263 -5.0831 26 1 9.6787 -2.5581 -6.0799 27 6 7.4689 -1.7057 -1.6522 28 6 6.0477 -1.1526 -1.5087 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 1.4887 1.6965 2.5459 35 1 3.0989 1.3602 3.2260 36 1 3.9187 3.5344 2.3603 37 1 2.3085 3.8708 1.6802 38 1 4.1817 3.6806 5.0283 39 1 2.6288 4.7755 6.9481 40 1 0.2865 5.2393 5.8690 41 1 4.0338 0.3576 -0.9566 42 1 6.3367 -0.6092 0.5560 43 1 6.9166 1.7732 0.1048 44 1 6.6496 1.4971 -1.6337 45 1 8.7268 0.1212 0.1318 46 1 9.0453 1.3064 -1.1592 47 1 9.8882 -3.6897 -3.2138 48 1 7.5209 -2.3581 -2.5239 49 1 7.7363 -2.2688 -0.7580 50 1 5.7497 -0.6692 -2.4391 51 1 5.3604 -1.9688 -1.2863 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611523119.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:28 Heat of formation + Delta-G solvation = 32.733718 kcal Electronic energy + Delta-G solvation = -30658.997968 eV Core-core repulsion = 26561.570628 eV Total energy + Delta-G solvation = -4097.427339 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.77033 -40.33179 -37.73773 -36.38877 -34.81693 -33.98231 -33.15993 -32.46976 -31.71336 -30.09234 -29.37153 -28.10421 -26.31387 -25.07910 -23.70928 -22.21078 -21.96116 -21.75477 -20.63062 -20.56754 -19.76237 -19.17790 -17.95878 -17.62019 -16.88343 -16.58058 -16.10881 -15.65524 -15.17019 -14.85567 -14.77261 -14.52811 -14.28288 -13.90886 -13.64999 -13.51312 -13.33751 -13.08561 -13.02273 -12.92715 -12.78852 -12.51332 -12.45209 -12.39978 -12.25714 -11.63286 -11.43631 -11.21311 -11.10614 -10.80930 -10.72730 -10.46498 -10.25215 -10.13555 -10.03003 -9.97667 -9.81929 -9.72264 -9.51870 -9.09279 -8.69289 -8.50088 -8.39587 -6.67187 -5.78838 -3.20866 1.48410 1.83237 2.40287 2.63223 2.90483 3.31801 3.36980 3.45086 3.47323 3.96788 4.48529 4.50058 4.56305 4.66902 4.71945 4.82617 4.92427 4.97171 5.00263 5.19114 5.29193 5.35354 5.41120 5.50306 5.53570 5.58748 5.60850 5.62835 5.71804 5.80246 5.91722 5.93884 6.09442 6.16464 6.27210 6.29788 6.30929 6.37376 6.45475 6.54081 6.60527 6.62467 6.81503 6.87589 6.92645 7.00325 7.07735 7.33458 7.63065 7.80415 8.05362 8.45565 8.72390 9.21702 9.85015 10.42189 11.30107 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017035 B = 0.002147 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.233019 B =13036.453933 C =14144.928314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.175 4.175 3 C 0.136 3.864 4 N -0.630 5.630 5 C 0.141 3.859 6 C -0.055 4.055 7 C -0.007 4.007 8 C -0.205 4.205 9 C -0.212 4.212 10 C -0.048 4.048 11 O -0.178 6.178 12 C 0.704 3.296 13 O -0.585 6.585 14 N -0.737 5.737 15 C 0.168 3.832 16 C -0.138 4.138 17 C 0.147 3.853 18 N -0.593 5.593 19 C -0.250 4.250 20 H 0.066 0.934 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.175 3.825 28 C -0.145 4.145 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.201 0.799 41 H 0.391 0.609 42 H 0.081 0.919 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.020 0.980 46 H 0.055 0.945 47 H 0.253 0.747 48 H 0.091 0.909 49 H 0.021 0.979 50 H 0.058 0.942 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.978 11.668 10.770 27.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.195 4.195 3 C 0.013 3.987 4 N -0.366 5.366 5 C 0.018 3.982 6 C -0.094 4.094 7 C -0.057 4.057 8 C -0.224 4.224 9 C -0.231 4.231 10 C -0.116 4.116 11 O -0.075 6.075 12 C 0.405 3.595 13 O -0.462 6.462 14 N -0.392 5.392 15 C 0.064 3.936 16 C -0.179 4.179 17 C 0.020 3.980 18 N -0.316 5.316 19 C -0.380 4.380 20 H 0.084 0.916 21 C -0.198 4.198 22 N -0.548 5.548 23 Si 0.732 3.268 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.048 3.952 28 C -0.185 4.185 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.168 0.832 39 H 0.165 0.835 40 H 0.218 0.782 41 H 0.226 0.774 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.038 0.962 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.109 0.891 49 H 0.039 0.961 50 H 0.077 0.923 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.519 11.529 11.185 26.853 hybrid contribution 0.084 -0.046 -0.968 0.973 sum -21.435 11.483 10.217 26.376 Atomic orbital electron populations 1.23871 0.95709 1.02063 0.99842 1.23434 0.96420 0.99181 1.00439 1.20633 0.92601 0.95739 0.89752 1.47150 1.11144 1.66331 1.12024 1.21209 1.00071 0.91611 0.85359 1.20562 1.02779 0.96069 0.89990 1.22291 0.83273 1.02283 0.97873 1.21707 1.01800 1.06213 0.92696 1.21864 0.94229 1.05850 1.01168 1.23995 1.00537 1.04935 0.82091 1.84006 1.33139 1.61863 1.28461 1.15978 0.81442 0.78210 0.83826 1.90924 1.52959 1.62524 1.39838 1.45706 1.15790 1.66510 1.11176 1.20986 0.78665 0.94377 0.99604 1.22435 0.97869 0.97271 1.00310 1.20876 0.92718 0.91758 0.92617 1.44101 1.40330 1.21343 1.25795 1.19229 1.20866 0.92197 1.05661 0.91624 1.25061 0.99129 0.96268 0.99321 1.70035 1.50440 0.98173 1.36118 0.86231 0.78594 0.77526 0.84485 1.20275 1.21748 1.21598 1.20738 0.83415 0.89783 1.01275 1.22530 1.01947 0.97314 0.96752 0.88448 0.88248 0.86924 0.89707 0.89712 0.90495 0.89168 0.88158 0.90169 0.83242 0.83518 0.78243 0.77436 0.90069 0.92678 0.92522 0.96169 0.92650 0.93674 0.89070 0.96068 0.92286 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 14.32 29.01 0.42 -0.78 16 2 C -0.18 -1.40 9.85 -36.03 -0.35 -1.76 16 3 C 0.14 1.08 5.61 -5.20 -0.03 1.05 16 4 N -0.63 -6.84 2.46 -180.80 -0.44 -7.28 16 5 C 0.14 1.43 5.39 -4.04 -0.02 1.40 16 6 C -0.06 -0.53 6.07 -27.88 -0.17 -0.70 16 7 C -0.01 -0.07 6.57 -35.63 -0.23 -0.30 16 8 C -0.20 -2.14 10.81 -39.71 -0.43 -2.57 16 9 C -0.21 -1.88 10.91 -39.71 -0.43 -2.32 16 10 C -0.05 -0.39 12.09 29.41 0.36 -0.03 16 11 O -0.18 -1.79 10.65 5.69 0.06 -1.73 16 12 C 0.70 10.38 8.24 -86.93 -0.72 9.67 16 13 O -0.58 -10.94 15.58 5.28 0.08 -10.86 16 14 N -0.74 -10.41 4.94 -58.48 -0.29 -10.70 16 15 C 0.17 2.92 2.42 -67.73 -0.16 2.76 16 16 C -0.14 -2.54 5.68 -26.45 -0.15 -2.69 16 17 C 0.15 3.18 6.50 -3.71 -0.02 3.16 16 18 N -0.59 -14.79 2.99 -172.32 -0.52 -15.31 16 19 C -0.25 -6.81 9.58 -15.06 -0.14 -6.96 16 20 H 0.07 1.77 7.89 -52.48 -0.41 1.35 16 21 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 22 N -0.90 -26.04 11.20 55.49 0.62 -25.42 16 23 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.17 4.08 5.30 -3.71 -0.02 4.06 16 28 C -0.15 -2.65 5.55 -26.61 -0.15 -2.79 16 29 H 0.10 0.54 7.84 -52.49 -0.41 0.13 16 30 H 0.10 0.62 8.06 -52.49 -0.42 0.20 16 31 H 0.11 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.08 0.52 7.72 -51.93 -0.40 0.12 16 33 H 0.08 0.63 6.36 -51.93 -0.33 0.30 16 34 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 35 H 0.09 1.09 7.42 -51.93 -0.39 0.71 16 36 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.15 1.51 8.06 -52.48 -0.42 1.09 16 39 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.20 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.39 4.55 6.33 -40.82 -0.26 4.29 16 42 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.05 1.17 7.93 -51.93 -0.41 0.76 16 47 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 49 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 51 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 415.49 15.07 6.26 6.26 Total: -1.00 -32.55 415.49 -9.98 -42.53 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -8.37 Total: 4.89 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -2.35 Total: 1.14 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.63 Total: -58.71 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.14 Total: -12.59 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.55 -9.98 -42.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611523119.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.259 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds