Wall clock time and date at job start Wed Apr 1 2020 04:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99771 * 2 1 4 4 N 1.46498 * 109.46725 * 125.00226 * 3 2 1 5 5 C 1.46503 * 119.99991 * 269.99462 * 4 3 2 6 6 C 1.53001 * 109.47455 * 270.00498 * 5 4 3 7 7 C 1.50700 * 109.47243 * 179.97438 * 6 5 4 8 8 C 1.34510 * 125.79098 * 89.99633 * 7 6 5 9 9 C 1.41377 * 106.84202 * 180.02562 * 8 7 6 10 10 C 1.34507 * 106.84374 * 359.97438 * 9 8 7 11 11 O 1.34298 * 125.78647 * 269.69223 * 7 6 5 12 12 C 1.34778 * 120.00118 * 90.00037 * 4 3 2 13 13 O 1.21593 * 119.99912 * 180.02562 * 12 4 3 14 14 N 1.34767 * 120.00119 * 359.97438 * 12 4 3 15 15 C 1.46497 * 120.00147 * 180.02562 * 14 12 4 16 16 C 1.53349 * 109.42224 * 275.12789 * 15 14 12 17 17 C 1.53189 * 109.15350 * 178.67121 * 16 15 14 18 18 N 1.46931 * 108.89061 * 54.57922 * 17 16 15 19 19 C 1.36938 * 120.62972 * 126.29441 * 18 17 16 20 20 H 1.08005 * 120.00173 * 331.83979 * 19 18 17 21 21 C 1.38813 * 119.99936 * 151.83343 * 19 18 17 22 22 N 1.31618 * 120.00004 * 343.08512 * 21 19 18 23 23 Si 1.86806 * 119.99953 * 163.08402 * 21 19 18 24 24 H 1.48500 * 109.46925 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46793 * 120.00276 * 23 21 19 26 26 H 1.48498 * 109.46814 * 240.00176 * 23 21 19 27 27 C 1.46927 * 118.74004 * 306.32424 * 18 17 16 28 28 C 1.53047 * 109.46203 * 155.00199 * 15 14 12 29 29 H 1.08001 * 119.99908 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00060 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99908 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.47303 * 4.99781 * 3 2 1 33 33 H 1.09003 * 109.47179 * 244.99892 * 3 2 1 34 34 H 1.09001 * 109.46794 * 30.00693 * 5 4 3 35 35 H 1.09005 * 109.47371 * 149.99938 * 5 4 3 36 36 H 1.09002 * 109.46420 * 299.99579 * 6 5 4 37 37 H 1.08993 * 109.46986 * 59.99705 * 6 5 4 38 38 H 1.08004 * 126.57735 * 359.96653 * 8 7 6 39 39 H 1.08001 * 126.58109 * 179.97438 * 9 8 7 40 40 H 1.08000 * 125.79662 * 180.02562 * 10 9 8 41 41 H 0.97002 * 120.00429 * 0.02562 * 14 12 4 42 42 H 1.08997 * 109.46024 * 35.03189 * 15 14 12 43 43 H 1.09001 * 109.68292 * 58.70764 * 16 15 14 44 44 H 1.08994 * 109.47524 * 298.51588 * 16 15 14 45 45 H 1.09000 * 109.58714 * 294.72587 * 17 16 15 46 46 H 1.09003 * 109.58688 * 174.43867 * 17 16 15 47 47 H 0.96996 * 119.99787 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.58255 * 173.39566 * 27 18 17 49 49 H 1.09000 * 109.58150 * 293.67300 * 27 18 17 50 50 H 1.09000 * 109.49464 * 61.43529 * 28 15 14 51 51 H 1.08999 * 109.52117 * 301.35281 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5588 1.8649 2.4249 6 6 2.8486 3.3662 2.4813 7 6 2.4006 3.9146 3.8116 8 6 3.1536 3.9947 4.9233 9 6 2.3408 4.5675 5.9282 10 6 1.1398 4.8037 5.3705 11 8 1.1837 4.4115 4.0866 12 6 4.2497 0.8661 0.9824 13 8 5.0216 0.8879 1.9216 14 7 4.6496 0.3754 -0.2074 15 6 6.0146 -0.1314 -0.3692 16 6 6.9560 1.0344 -0.6956 17 6 8.3863 0.5027 -0.8308 18 7 8.3991 -0.5813 -1.8226 19 6 9.2613 -0.5439 -2.8858 20 1 9.5970 0.4057 -3.2758 21 6 9.7039 -1.7265 -3.4624 22 7 9.5793 -2.8633 -2.8108 23 14 10.4763 -1.7046 -5.1631 24 1 10.5002 -0.3119 -5.6779 25 1 11.8643 -2.2263 -5.0831 26 1 9.6787 -2.5581 -6.0799 27 6 7.4689 -1.7057 -1.6522 28 6 6.0477 -1.1526 -1.5087 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 1.4887 1.6965 2.5459 35 1 3.0989 1.3602 3.2260 36 1 3.9187 3.5344 2.3603 37 1 2.3085 3.8708 1.6802 38 1 4.1817 3.6806 5.0283 39 1 2.6288 4.7755 6.9481 40 1 0.2865 5.2393 5.8690 41 1 4.0338 0.3576 -0.9566 42 1 6.3367 -0.6092 0.5560 43 1 6.9166 1.7732 0.1048 44 1 6.6496 1.4971 -1.6337 45 1 8.7268 0.1212 0.1318 46 1 9.0453 1.3064 -1.1592 47 1 9.8882 -3.6897 -3.2138 48 1 7.5209 -2.3581 -2.5239 49 1 7.7363 -2.2688 -0.7580 50 1 5.7497 -0.6692 -2.4391 51 1 5.3604 -1.9688 -1.2863 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611523119.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:27 Heat of formation + Delta-G solvation = 14.648397 kcal Electronic energy + Delta-G solvation = -30659.782206 eV Core-core repulsion = 26561.570628 eV Total energy + Delta-G solvation = -4098.211578 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.47043 -41.46237 -39.25849 -37.46999 -36.14076 -34.98431 -33.93720 -33.84358 -32.87319 -31.73209 -31.04511 -28.92290 -27.18776 -26.71808 -24.83423 -23.88844 -23.31775 -22.66080 -21.39320 -21.30771 -21.14007 -20.44346 -19.13952 -18.49278 -18.31748 -17.72885 -16.95499 -16.83064 -16.48967 -16.08798 -15.85154 -15.63368 -15.38826 -15.35222 -15.12135 -14.78670 -14.57610 -14.34130 -14.14959 -13.91294 -13.75593 -13.70513 -13.44514 -13.23162 -13.15325 -13.07104 -12.99284 -12.61897 -12.47621 -12.22551 -12.19013 -11.99223 -11.97527 -11.85898 -11.54245 -11.36621 -11.14089 -10.85903 -10.56177 -10.37414 -10.17414 -9.71399 -9.26766 -8.70458 -7.87313 -5.33035 0.77978 1.20199 1.47969 1.49799 1.60679 1.68069 1.78552 2.10742 2.19357 2.52359 2.96487 3.28992 3.66691 3.79088 3.90284 3.95582 3.97282 4.06615 4.09895 4.14262 4.20689 4.30871 4.35171 4.40187 4.45564 4.47175 4.66052 4.68257 4.74342 4.83045 4.86426 4.90590 4.98123 5.01645 5.06433 5.07529 5.08166 5.16432 5.26334 5.30328 5.42287 5.47449 5.60152 5.61300 5.65327 5.70069 5.73227 5.86387 5.92480 6.21673 6.39670 6.98084 7.14927 7.58436 7.84374 8.37621 9.20021 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017035 B = 0.002147 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.233019 B =13036.453933 C =14144.928314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.194 4.194 3 C 0.133 3.867 4 N -0.619 5.619 5 C 0.145 3.855 6 C -0.045 4.045 7 C -0.019 4.019 8 C -0.227 4.227 9 C -0.230 4.230 10 C -0.038 4.038 11 O -0.185 6.185 12 C 0.701 3.299 13 O -0.630 6.630 14 N -0.725 5.725 15 C 0.181 3.819 16 C -0.122 4.122 17 C 0.145 3.855 18 N -0.609 5.609 19 C -0.261 4.261 20 H 0.068 0.932 21 C -0.052 4.052 22 N -0.936 5.936 23 Si 0.969 3.031 24 H -0.266 1.266 25 H -0.295 1.295 26 H -0.287 1.287 27 C 0.179 3.821 28 C -0.127 4.127 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.141 0.859 39 H 0.164 0.836 40 H 0.241 0.759 41 H 0.407 0.593 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.006 0.994 46 H 0.057 0.943 47 H 0.250 0.750 48 H 0.064 0.936 49 H -0.007 1.007 50 H 0.071 0.929 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.051 13.479 10.005 30.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.214 4.214 3 C 0.012 3.988 4 N -0.354 5.354 5 C 0.022 3.978 6 C -0.084 4.084 7 C -0.069 4.069 8 C -0.246 4.246 9 C -0.249 4.249 10 C -0.105 4.105 11 O -0.082 6.082 12 C 0.403 3.597 13 O -0.511 6.511 14 N -0.381 5.381 15 C 0.075 3.925 16 C -0.162 4.162 17 C 0.018 3.982 18 N -0.332 5.332 19 C -0.391 4.391 20 H 0.085 0.915 21 C -0.247 4.247 22 N -0.582 5.582 23 Si 0.797 3.203 24 H -0.190 1.190 25 H -0.222 1.222 26 H -0.214 1.214 27 C 0.053 3.947 28 C -0.166 4.166 29 H 0.134 0.866 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.130 0.870 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.159 0.841 39 H 0.181 0.819 40 H 0.257 0.743 41 H 0.244 0.756 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.024 0.976 46 H 0.076 0.924 47 H 0.060 0.940 48 H 0.082 0.918 49 H 0.012 0.988 50 H 0.089 0.911 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.661 13.373 10.406 29.921 hybrid contribution 0.982 -0.585 -0.609 1.295 sum -23.679 12.788 9.797 28.639 Atomic orbital electron populations 1.24066 0.95236 1.03172 0.97377 1.23303 0.96892 0.98468 1.02699 1.20886 0.92501 0.96790 0.88648 1.47137 1.10110 1.64973 1.13216 1.21216 1.00768 0.91668 0.84187 1.20404 1.01790 0.95665 0.90497 1.22316 0.83640 1.02975 0.98003 1.21897 1.01943 1.06942 0.93839 1.22150 0.94550 1.06346 1.01845 1.24784 1.01317 1.03210 0.81183 1.84003 1.32735 1.61950 1.29503 1.16118 0.82366 0.78114 0.83130 1.90901 1.54715 1.64242 1.41228 1.45295 1.14646 1.66337 1.11834 1.20549 0.80293 0.93720 0.97891 1.22220 0.95728 0.97397 1.00856 1.20963 0.95090 0.90970 0.91146 1.44356 1.40595 1.22158 1.26119 1.19548 1.20924 0.92347 1.06245 0.91454 1.25837 1.00147 0.95940 1.02762 1.70193 1.51792 0.98618 1.37609 0.85182 0.77160 0.77873 0.80057 1.19028 1.22217 1.21389 1.20557 0.86231 0.89276 0.98651 1.22239 0.98688 0.98101 0.97593 0.86612 0.87868 0.88582 0.87004 0.89014 0.88236 0.91824 0.90133 0.88260 0.84096 0.81870 0.74340 0.75555 0.92782 0.92307 0.91522 0.97638 0.92433 0.94038 0.91810 0.98842 0.91082 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 14.32 67.78 0.97 -0.68 16 2 C -0.19 -2.63 9.85 25.64 0.25 -2.38 16 3 C 0.13 1.73 5.61 85.63 0.48 2.21 16 4 N -0.62 -12.54 2.46 -844.19 -2.07 -14.61 16 5 C 0.15 2.78 5.39 86.38 0.47 3.24 16 6 C -0.05 -0.82 6.07 29.85 0.18 -0.64 16 7 C -0.02 -0.38 6.57 24.83 0.16 -0.21 16 8 C -0.23 -4.78 10.81 22.19 0.24 -4.54 16 9 C -0.23 -3.81 10.91 22.19 0.24 -3.57 16 10 C -0.04 -0.52 12.09 66.97 0.81 0.29 16 11 O -0.19 -3.34 10.65 -2.55 -0.03 -3.37 16 12 C 0.70 20.36 8.24 179.06 1.48 21.83 16 13 O -0.63 -24.15 15.58 -4.01 -0.06 -24.21 16 14 N -0.73 -19.64 4.94 -457.19 -2.26 -21.90 16 15 C 0.18 6.27 2.42 45.12 0.11 6.38 16 16 C -0.12 -4.41 5.68 30.77 0.17 -4.24 16 17 C 0.14 6.36 6.50 86.36 0.56 6.92 16 18 N -0.61 -30.96 2.99 -699.08 -2.09 -33.06 16 19 C -0.26 -14.34 9.58 84.03 0.81 -13.54 16 20 H 0.07 3.62 7.89 -2.91 -0.02 3.59 16 21 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 22 N -0.94 -55.44 11.20 21.65 0.24 -55.20 16 23 Si 0.97 44.60 29.59 68.60 2.03 46.63 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 26 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 27 C 0.18 8.62 5.30 86.36 0.46 9.08 16 28 C -0.13 -4.53 5.55 30.67 0.17 -4.36 16 29 H 0.12 0.78 7.84 -2.91 -0.02 0.76 16 30 H 0.10 1.00 8.06 -2.91 -0.02 0.97 16 31 H 0.10 1.64 8.06 -2.91 -0.02 1.61 16 32 H 0.11 0.90 7.72 -2.39 -0.02 0.88 16 33 H 0.09 1.08 6.36 -2.39 -0.02 1.06 16 34 H 0.10 1.47 8.07 -2.39 -0.02 1.45 16 35 H 0.06 1.58 7.42 -2.38 -0.02 1.56 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 39 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.24 1.04 8.06 -2.91 -0.02 1.01 16 41 H 0.41 8.55 6.33 -92.71 -0.59 7.96 16 42 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 43 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 46 H 0.06 2.46 7.93 -2.39 -0.02 2.44 16 47 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 48 H 0.06 3.42 6.06 -2.39 -0.01 3.40 16 49 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 50 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 51 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -73.06 415.49 4.06 -69.00 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.32 Total: 23.38 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 7.98 Total: 13.34 kcal Atomic # 7 Polarization: -118.59 SS G_CDS: -6.18 Total: -124.77 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.09 Total: -27.58 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -73.06 4.06 -69.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611523119.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.652 kcal (2) G-P(sol) polarization free energy of solvation -73.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds