Wall clock time and date at job start Wed Apr 1 2020 05:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46603 * 2 1 4 4 N 1.46904 * 109.46849 * 180.47960 * 3 2 1 5 5 C 1.46895 * 110.99981 * 298.70802 * 4 3 2 6 6 C 1.50703 * 109.46971 * 292.58872 * 5 4 3 7 7 O 1.21279 * 120.00125 * 354.47449 * 6 5 4 8 8 N 1.34781 * 120.00143 * 174.47472 * 6 5 4 9 9 C 1.46492 * 120.00128 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.46841 * 180.02562 * 9 8 6 11 11 H 1.07991 * 120.00299 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99407 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00295 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99567 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47310 * 89.99629 * 14 12 10 16 16 H 1.48494 * 109.46621 * 209.99630 * 14 12 10 17 17 H 1.48501 * 109.46994 * 329.99503 * 14 12 10 18 18 C 1.46904 * 110.99979 * 62.66114 * 4 3 2 19 19 H 1.08999 * 109.46772 * 296.43319 * 18 4 3 20 20 C 1.52999 * 109.47315 * 176.43356 * 18 4 3 21 21 C 1.50692 * 109.47119 * 56.43320 * 18 4 3 22 22 O 1.21285 * 120.00298 * 29.68510 * 21 18 4 23 23 N 1.34776 * 119.99836 * 209.68903 * 21 18 4 24 24 C 1.39932 * 119.99890 * 184.35403 * 23 21 18 25 25 C 1.38871 * 120.06664 * 215.97932 * 24 23 21 26 26 C 1.38116 * 119.92693 * 179.78770 * 25 24 23 27 27 C 1.38278 * 120.07141 * 0.48763 * 26 25 24 28 28 C 1.38291 * 120.13998 * 359.74486 * 27 26 25 29 29 C 1.38114 * 120.06577 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.47400 * 299.99976 * 1 2 3 31 31 H 1.08996 * 109.47211 * 60.00055 * 1 2 3 32 32 H 1.09007 * 109.46960 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47136 * 240.00497 * 2 1 3 34 34 H 1.08996 * 109.47211 * 119.99945 * 2 1 3 35 35 H 1.08999 * 109.47288 * 60.48591 * 3 2 1 36 36 H 1.08996 * 109.47421 * 300.47641 * 3 2 1 37 37 H 1.08998 * 109.47514 * 52.58653 * 5 4 3 38 38 H 1.09005 * 109.46962 * 172.59124 * 5 4 3 39 39 H 0.97006 * 119.99510 * 0.02562 * 8 6 5 40 40 H 1.08998 * 109.47287 * 299.99854 * 9 8 6 41 41 H 1.09000 * 109.47466 * 60.00039 * 9 8 6 42 42 H 0.97005 * 119.99471 * 180.02562 * 13 12 10 43 43 H 1.09009 * 109.47051 * 59.99567 * 20 18 4 44 44 H 1.08995 * 109.47195 * 179.97438 * 20 18 4 45 45 H 1.08999 * 109.46764 * 300.00379 * 20 18 4 46 46 H 0.96997 * 120.00668 * 4.34742 * 23 21 18 47 47 H 1.07996 * 120.03881 * 0.02562 * 25 24 23 48 48 H 1.08001 * 119.96688 * 180.22801 * 26 25 24 49 49 H 1.08003 * 119.93310 * 179.72028 * 27 26 25 50 50 H 1.07997 * 119.96369 * 180.02562 * 28 27 26 51 51 H 1.08000 * 120.02901 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 -0.0116 5 6 4.0448 0.7805 1.1852 6 6 3.7248 1.6085 2.4030 7 8 3.2002 2.6947 2.2772 8 7 4.0217 1.1420 3.6322 9 6 3.7102 1.9466 4.8161 10 6 4.1399 1.2042 6.0552 11 1 4.5986 0.2304 5.9694 12 6 3.9462 1.7681 7.2985 13 7 3.3870 2.9538 7.4029 14 14 4.4794 0.8482 8.8345 15 1 5.8820 1.2071 9.1645 16 1 3.5936 1.2204 9.9667 17 1 4.3863 -0.6141 8.5930 18 6 4.0257 0.8162 -1.2358 19 1 3.7286 -0.2323 -1.2606 20 6 5.5524 0.9142 -1.2534 21 6 3.4628 1.5265 -2.4397 22 8 3.1799 2.7039 -2.3718 23 7 3.2736 0.8533 -3.5918 24 6 2.8373 1.5319 -4.7352 25 6 1.9671 0.9123 -5.6224 26 6 1.5348 1.5864 -6.7477 27 6 1.9756 2.8733 -6.9966 28 6 2.8460 3.4913 -6.1174 29 6 3.2782 2.8242 -4.9879 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6836 1.9538 0.8943 36 1 1.6696 1.9588 -0.8856 37 1 3.5930 -0.2061 1.2877 38 1 5.1257 0.6771 1.0899 39 1 4.4417 0.2734 3.7328 40 1 4.2414 2.8967 4.7597 41 1 2.6369 2.1323 4.8571 42 1 3.2512 3.3505 8.2777 43 1 5.9596 0.4005 -0.3825 44 1 5.9359 0.4491 -2.1615 45 1 5.8494 1.9627 -1.2284 46 1 3.4400 -0.1016 -3.6287 47 1 1.6257 -0.0942 -5.4308 48 1 0.8552 1.1065 -7.4363 49 1 1.6397 3.3967 -7.8796 50 1 3.1881 4.4965 -6.3143 51 1 3.9582 3.3073 -4.3020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749395318.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:39 Heat of formation + Delta-G solvation = -35.655127 kcal Electronic energy + Delta-G solvation = -30671.160279 eV Core-core repulsion = 26570.767376 eV Total energy + Delta-G solvation = -4100.392902 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.03687 -39.54380 -38.57738 -37.04834 -34.98824 -34.10585 -33.61618 -32.30703 -31.18478 -31.14385 -29.55099 -28.54464 -26.66920 -25.02094 -24.15486 -23.10256 -22.50599 -22.26921 -21.26442 -19.99356 -19.34577 -18.03760 -17.49970 -16.95925 -16.62884 -16.18378 -15.89041 -15.56707 -15.36822 -14.96801 -14.63186 -14.52346 -14.39667 -14.17880 -13.90333 -13.85233 -13.60753 -13.52340 -13.11857 -12.76821 -12.62942 -12.54700 -12.12183 -12.02039 -11.96223 -11.88477 -11.63668 -11.58083 -11.51436 -11.47024 -11.19560 -10.97062 -10.87327 -10.63899 -10.37523 -10.29980 -9.88008 -9.38248 -9.19815 -8.97696 -8.71705 -8.42876 -8.18401 -7.82474 -6.15423 -4.22406 0.99051 1.13325 2.36027 2.63379 3.24280 3.30237 3.32500 3.42605 3.55187 3.64086 4.21952 4.30928 4.41774 4.62548 4.67774 4.71229 4.77695 4.88333 4.92192 4.99150 5.12985 5.13970 5.20367 5.20508 5.27188 5.30385 5.31015 5.38897 5.52152 5.62086 5.67106 5.72968 5.73904 5.81791 5.95347 6.02518 6.04964 6.08620 6.10003 6.22642 6.29107 6.40345 6.75424 6.86661 6.94859 7.14117 7.35077 7.48266 7.54944 7.69229 7.91869 7.98932 8.66311 8.81328 9.16716 9.44464 10.94680 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023874 B = 0.001965 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.525845 B =14245.916642 C =14482.458556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.166 4.166 3 C 0.044 3.956 4 N -0.491 5.491 5 C 0.026 3.974 6 C 0.499 3.501 7 O -0.532 6.532 8 N -0.716 5.716 9 C 0.252 3.748 10 C -0.543 4.543 11 H 0.062 0.938 12 C 0.063 3.937 13 N -0.884 5.884 14 Si 0.903 3.097 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.067 3.933 19 H 0.062 0.938 20 C -0.146 4.146 21 C 0.519 3.481 22 O -0.487 6.487 23 N -0.680 5.680 24 C 0.151 3.849 25 C -0.147 4.147 26 C -0.103 4.103 27 C -0.138 4.138 28 C -0.100 4.100 29 C -0.119 4.119 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.104 0.896 39 H 0.388 0.612 40 H 0.026 0.974 41 H 0.025 0.975 42 H 0.266 0.734 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.408 0.592 47 H 0.124 0.876 48 H 0.124 0.876 49 H 0.122 0.878 50 H 0.125 0.875 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.123 -10.107 -28.314 30.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C -0.083 4.083 4 N -0.215 5.215 5 C -0.105 4.105 6 C 0.282 3.718 7 O -0.409 6.409 8 N -0.366 5.366 9 C 0.131 3.869 10 C -0.582 4.582 11 H 0.081 0.919 12 C -0.141 4.141 13 N -0.522 5.522 14 Si 0.731 3.269 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.045 4.045 19 H 0.080 0.920 20 C -0.204 4.204 21 C 0.305 3.695 22 O -0.358 6.358 23 N -0.327 5.327 24 C 0.057 3.943 25 C -0.168 4.168 26 C -0.121 4.121 27 C -0.157 4.157 28 C -0.119 4.119 29 C -0.139 4.139 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.122 0.878 39 H 0.220 0.780 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.244 0.756 47 H 0.142 0.858 48 H 0.142 0.858 49 H 0.140 0.860 50 H 0.143 0.857 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.571 -7.781 -28.092 29.155 hybrid contribution 0.237 -2.273 0.963 2.480 sum -0.335 -10.054 -27.128 28.933 Atomic orbital electron populations 1.21634 0.95064 1.01414 1.02217 1.22244 0.97402 0.99434 1.01386 1.22526 0.85626 0.94842 1.05329 1.61686 1.08489 1.52715 0.98604 1.22201 1.01959 0.96244 0.90049 1.20178 0.80079 0.87204 0.84292 1.90674 1.42697 1.21380 1.86149 1.46437 1.61322 1.22210 1.06605 1.19067 0.96667 0.91063 0.80060 1.21228 1.41888 1.04261 0.90782 0.91949 1.24959 0.94870 0.94985 0.99243 1.69979 1.42082 1.15452 1.24666 0.86424 0.78533 0.79832 0.82158 1.20469 1.21026 1.19803 1.21577 0.97135 0.96352 0.89454 0.92030 1.21878 0.91441 1.04430 1.02617 1.20667 0.77475 0.87887 0.83425 1.90776 1.46548 1.15512 1.82964 1.43660 1.67808 1.12375 1.08895 1.17735 0.95752 0.93444 0.87349 1.20910 0.98403 1.01068 0.96403 1.20938 0.99491 0.94845 0.96850 1.21146 0.99070 0.95444 1.00016 1.21079 0.97229 0.99796 0.93798 1.21173 1.00829 0.94299 0.97597 0.92131 0.92897 0.92902 0.92808 0.91531 0.88143 0.90205 0.91936 0.87829 0.77958 0.95564 0.95658 0.92457 0.90636 0.91684 0.90468 0.75608 0.85837 0.85784 0.86032 0.85698 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 37.16 0.37 -1.24 16 2 C -0.17 -1.91 5.26 -26.73 -0.14 -2.05 16 3 C 0.04 0.66 4.63 -3.82 -0.02 0.64 16 4 N -0.49 -7.07 4.01 -229.48 -0.92 -7.99 16 5 C 0.03 0.37 5.07 -4.98 -0.03 0.34 16 6 C 0.50 9.87 7.43 -10.98 -0.08 9.79 16 7 O -0.53 -13.00 14.71 5.56 0.08 -12.92 16 8 N -0.72 -14.83 5.55 -61.47 -0.34 -15.17 16 9 C 0.25 6.69 5.43 -5.20 -0.03 6.66 16 10 C -0.54 -14.69 9.28 -34.44 -0.32 -15.01 16 11 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 13 N -0.88 -26.18 13.29 55.43 0.74 -25.44 16 14 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 C 0.07 0.70 2.03 -68.87 -0.14 0.56 16 19 H 0.06 0.49 6.54 -51.93 -0.34 0.15 16 20 C -0.15 -1.29 8.96 37.16 0.33 -0.96 16 21 C 0.52 6.10 5.61 -10.99 -0.06 6.03 16 22 O -0.49 -7.88 13.28 5.55 0.07 -7.80 16 23 N -0.68 -5.90 5.33 -9.87 -0.05 -5.95 16 24 C 0.15 1.49 6.23 -83.69 -0.52 0.97 16 25 C -0.15 -1.19 9.97 -39.39 -0.39 -1.58 16 26 C -0.10 -0.77 10.04 -39.61 -0.40 -1.17 16 27 C -0.14 -1.09 10.04 -39.55 -0.40 -1.49 16 28 C -0.10 -0.92 10.04 -39.61 -0.40 -1.32 16 29 C -0.12 -1.30 8.65 -39.40 -0.34 -1.64 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.05 0.52 6.52 -51.93 -0.34 0.18 16 34 H 0.07 0.79 6.30 -51.93 -0.33 0.46 16 35 H 0.10 1.86 6.18 -51.93 -0.32 1.54 16 36 H 0.08 1.27 6.11 -51.93 -0.32 0.96 16 37 H 0.06 0.73 5.99 -51.93 -0.31 0.42 16 38 H 0.10 1.20 5.76 -51.93 -0.30 0.90 16 39 H 0.39 6.77 8.32 -40.82 -0.34 6.43 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.07 0.59 6.17 -51.92 -0.32 0.27 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.41 2.14 8.82 -40.82 -0.36 1.78 16 47 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 48 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 49 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 50 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 51 H 0.13 1.65 6.61 -52.49 -0.35 1.30 16 LS Contribution 409.52 15.07 6.17 6.17 Total: -1.00 -35.64 409.52 -9.73 -45.37 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -7.80 Total: 7.74 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -2.66 Total: 0.20 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.58 Total: -54.56 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: 0.16 Total: -20.72 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.64 -9.73 -45.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749395318.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.719 kcal (2) G-P(sol) polarization free energy of solvation -35.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds