Wall clock time and date at job start Wed Apr 1 2020 05:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47234 * 2 1 4 4 N 1.46496 * 109.46787 * 120.00276 * 2 1 3 5 5 C 1.46498 * 120.00070 * 120.28141 * 4 2 1 6 6 C 1.50701 * 109.47417 * 89.99566 * 5 4 2 7 7 O 1.21289 * 120.00054 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99765 * 179.97438 * 6 5 4 9 9 C 1.37103 * 119.99832 * 179.97438 * 8 6 5 10 10 H 1.07998 * 119.99833 * 0.02562 * 9 8 6 11 11 C 1.38947 * 119.99965 * 180.02562 * 9 8 6 12 12 N 1.31412 * 120.00293 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00082 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46942 * 59.99567 * 13 11 9 15 15 H 1.48501 * 109.47505 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.47007 * 300.00021 * 13 11 9 17 17 C 1.39672 * 120.00187 * 300.27223 * 4 2 1 18 18 C 1.38909 * 120.07326 * 358.68289 * 17 4 2 19 19 C 1.38105 * 119.92677 * 179.76426 * 18 17 4 20 20 C 1.38289 * 120.07393 * 0.51340 * 19 18 17 21 21 C 1.50702 * 119.92580 * 179.72039 * 20 19 18 22 22 C 1.50694 * 109.47117 * 270.01861 * 21 20 19 23 23 O 1.21282 * 119.99974 * 0.02562 * 22 21 20 24 24 N 1.34772 * 120.00272 * 180.02562 * 22 21 20 25 25 C 1.46505 * 120.00488 * 180.02562 * 24 22 21 26 26 C 1.46506 * 119.99740 * 359.97438 * 24 22 21 27 27 C 1.38286 * 120.14595 * 359.73878 * 20 19 18 28 28 C 1.38101 * 120.07821 * 0.02562 * 27 20 19 29 29 H 1.09004 * 109.47069 * 304.66099 * 1 2 3 30 30 H 1.09006 * 109.47054 * 64.66153 * 1 2 3 31 31 H 1.09003 * 109.47727 * 184.65776 * 1 2 3 32 32 H 1.09000 * 109.46855 * 239.99825 * 2 1 3 33 33 H 1.08993 * 109.46963 * 188.91596 * 3 2 1 34 34 H 1.09001 * 109.47413 * 308.91691 * 3 2 1 35 35 H 1.08999 * 109.46896 * 68.91438 * 3 2 1 36 36 H 1.09005 * 109.46949 * 209.99605 * 5 4 2 37 37 H 1.08997 * 109.47314 * 329.99149 * 5 4 2 38 38 H 0.97001 * 120.00282 * 0.02562 * 8 6 5 39 39 H 0.97001 * 120.00377 * 180.02562 * 12 11 9 40 40 H 1.08001 * 120.04233 * 0.02562 * 18 17 4 41 41 H 1.07998 * 119.96882 * 180.24965 * 19 18 17 42 42 H 1.08998 * 109.46944 * 30.02012 * 21 20 19 43 43 H 1.09005 * 109.46790 * 150.02164 * 21 20 19 44 44 H 1.08996 * 109.46980 * 89.99419 * 25 24 22 45 45 H 1.08998 * 109.46891 * 209.99377 * 25 24 22 46 46 H 1.08996 * 109.46619 * 329.99525 * 25 24 22 47 47 H 1.09006 * 109.46625 * 60.00836 * 26 24 22 48 48 H 1.09005 * 109.46913 * 179.97438 * 26 24 22 49 49 H 1.08998 * 109.47298 * 300.00631 * 26 24 22 50 50 H 1.08007 * 119.96267 * 180.02562 * 27 20 19 51 51 H 1.07998 * 120.03690 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 2.8655 -1.8782 1.0617 6 6 4.3129 -1.4605 1.0196 7 8 4.6077 -0.2864 1.0941 8 7 5.2797 -2.3918 0.8993 9 6 6.5964 -2.0118 0.8605 10 1 6.8589 -0.9663 0.9268 11 6 7.5932 -2.9718 0.7359 12 7 7.2739 -4.2440 0.6557 13 14 9.3873 -2.4541 0.6837 14 1 9.7327 -1.7389 1.9385 15 1 10.2462 -3.6579 0.5481 16 1 9.6092 -1.5538 -0.4763 17 6 1.6761 -0.2169 2.4647 18 6 0.8956 0.9249 2.5942 19 6 0.5550 1.3879 3.8499 20 6 0.9989 0.7223 4.9779 21 6 0.6305 1.2341 6.3466 22 6 1.6783 2.2098 6.8168 23 8 2.6301 2.4649 6.1099 24 7 1.5576 2.7990 8.0229 25 6 2.5758 3.7481 8.4799 26 6 0.4074 2.4913 8.8767 27 6 1.7804 -0.4117 4.8526 28 6 2.1206 -0.8829 3.5998 29 1 -0.3633 0.5845 0.8453 30 1 -0.3633 0.4398 -0.9289 31 1 -0.3635 -1.0243 0.0834 32 1 1.8933 -0.5139 -0.8900 33 1 3.1182 1.4466 -0.1593 34 1 1.5525 2.0003 -0.7996 35 1 1.8125 1.9082 0.9589 36 1 2.7026 -2.5390 1.9132 37 1 2.6119 -2.4031 0.1408 38 1 5.0439 -3.3308 0.8394 39 1 7.9697 -4.9142 0.5691 40 1 0.5519 1.4476 1.7138 41 1 -0.0551 2.2732 3.9513 42 1 -0.3367 1.7343 6.2993 43 1 0.5736 0.3981 7.0439 44 1 2.3023 4.7546 8.1637 45 1 2.6421 3.7142 9.5673 46 1 3.5406 3.4813 8.0485 47 1 0.3976 1.4249 9.1024 48 1 0.4819 3.0581 9.8048 49 1 -0.5125 2.7615 8.3583 50 1 2.1252 -0.9295 5.7356 51 1 2.7313 -1.7683 3.5028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799354400.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:42 Heat of formation + Delta-G solvation = -18.266527 kcal Electronic energy + Delta-G solvation = -31001.079571 eV Core-core repulsion = 26901.440695 eV Total energy + Delta-G solvation = -4099.638876 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.18590 -39.52446 -37.94082 -36.56944 -35.55214 -33.87540 -32.89964 -31.81044 -31.11932 -30.09216 -28.75621 -27.62042 -26.90880 -26.44949 -25.19085 -24.14124 -22.26543 -21.60116 -20.14856 -19.32443 -19.08842 -17.87697 -17.04163 -16.61376 -16.27807 -16.04551 -15.94597 -15.72153 -15.02083 -14.51971 -14.17403 -14.10825 -13.85281 -13.66898 -13.58777 -13.36758 -13.25208 -13.06950 -13.00846 -12.86933 -12.62014 -12.58088 -12.25662 -12.19655 -12.06068 -11.78750 -11.67306 -11.50056 -11.45584 -11.16467 -11.03917 -10.95606 -10.52336 -10.40897 -10.17956 -9.92801 -9.88910 -9.45819 -9.44166 -8.85340 -8.46107 -8.32014 -7.92363 -6.76914 -6.37340 -3.78446 1.87460 1.92711 2.64793 2.91625 3.22849 3.27951 3.32316 3.42692 3.93207 4.18475 4.23713 4.61363 4.79468 4.90987 4.94483 5.00703 5.08087 5.09634 5.19898 5.21478 5.27187 5.32936 5.35202 5.39186 5.42786 5.46395 5.49956 5.65218 5.70664 5.72971 5.76892 5.80248 5.93837 5.97570 6.08020 6.10771 6.19188 6.27259 6.32511 6.39366 6.45721 6.72481 6.73587 6.81507 7.01479 7.17364 7.28841 7.58732 7.68119 7.94877 8.10449 8.18049 8.65793 9.22349 9.57875 10.10069 10.79462 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009383 B = 0.002927 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2983.358962 B = 9562.850700 C =11563.991330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.155 3.845 3 C -0.180 4.180 4 N -0.595 5.595 5 C 0.109 3.891 6 C 0.419 3.581 7 O -0.575 6.575 8 N -0.565 5.565 9 C -0.297 4.297 10 H 0.101 0.899 11 C 0.023 3.977 12 N -0.903 5.903 13 Si 0.929 3.071 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.274 1.274 17 C 0.245 3.755 18 C -0.211 4.211 19 C -0.062 4.062 20 C -0.144 4.144 21 C -0.083 4.083 22 C 0.507 3.493 23 O -0.517 6.517 24 N -0.632 5.632 25 C 0.085 3.915 26 C 0.082 3.918 27 C -0.055 4.055 28 C -0.191 4.191 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.391 0.609 39 H 0.271 0.729 40 H 0.138 0.862 41 H 0.110 0.890 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.051 0.949 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.075 0.925 49 H 0.061 0.939 50 H 0.112 0.888 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.645 8.316 11.602 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.051 3.949 3 C -0.238 4.238 4 N -0.303 5.303 5 C -0.018 4.018 6 C 0.203 3.797 7 O -0.458 6.458 8 N -0.202 5.202 9 C -0.426 4.426 10 H 0.119 0.881 11 C -0.179 4.179 12 N -0.545 5.545 13 Si 0.756 3.244 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.200 1.200 17 C 0.142 3.858 18 C -0.232 4.232 19 C -0.081 4.081 20 C -0.147 4.147 21 C -0.122 4.122 22 C 0.295 3.705 23 O -0.391 6.391 24 N -0.369 5.369 25 C -0.058 4.058 26 C -0.062 4.062 27 C -0.074 4.074 28 C -0.213 4.213 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.224 0.776 39 H 0.081 0.919 40 H 0.155 0.845 41 H 0.128 0.872 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.080 0.920 48 H 0.094 0.906 49 H 0.079 0.921 50 H 0.130 0.870 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.741 9.008 11.044 23.544 hybrid contribution 1.024 -0.399 0.072 1.102 sum -17.717 8.609 11.115 22.618 Atomic orbital electron populations 1.22510 0.95943 1.02552 1.02491 1.20834 0.92921 0.93716 0.87396 1.22464 1.03224 0.95705 1.02371 1.46213 1.52025 1.29579 1.02443 1.21267 0.90021 0.87508 1.03041 1.20584 0.87179 0.87155 0.84791 1.90542 1.82936 1.17654 1.54672 1.41894 1.05797 1.08422 1.64086 1.19635 0.81087 0.94981 1.46921 0.88135 1.25229 1.00421 0.94824 0.97408 1.69599 1.34505 0.99956 1.50416 0.85949 0.81717 0.77684 0.79072 1.19911 1.20977 1.19967 1.17684 0.91489 0.91797 0.84800 1.21047 1.05764 0.98502 0.97929 1.20562 0.98254 0.97564 0.91730 1.18826 1.04674 0.98389 0.92766 1.20486 0.97659 0.98098 0.96001 1.20945 0.87649 0.81468 0.80444 1.90782 1.32394 1.62045 1.53835 1.47856 1.25094 1.45535 1.18409 1.21633 0.92720 0.92161 0.99255 1.21766 0.88276 1.01371 0.94766 1.20564 0.95282 0.95140 0.96448 1.20629 1.06075 1.03209 0.91410 0.90922 0.92049 0.92422 0.90057 0.90925 0.92794 0.90822 0.89262 0.89461 0.77561 0.91882 0.84511 0.87172 0.88805 0.88748 0.93031 0.91524 0.90491 0.92036 0.90645 0.92077 0.87022 0.86271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 8.98 37.16 0.33 -1.72 16 2 C 0.16 2.31 3.28 -67.93 -0.22 2.09 16 3 C -0.18 -2.83 8.97 37.16 0.33 -2.50 16 4 N -0.59 -10.22 2.02 -165.55 -0.33 -10.56 16 5 C 0.11 1.96 5.63 -5.19 -0.03 1.93 16 6 C 0.42 9.99 7.85 -10.99 -0.09 9.91 16 7 O -0.57 -15.95 15.53 5.55 0.09 -15.87 16 8 N -0.56 -14.45 5.29 -10.96 -0.06 -14.51 16 9 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 10 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 11 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 12 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 13 Si 0.93 21.67 29.55 -169.99 -5.02 16.64 16 14 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 C 0.25 4.29 6.14 -83.79 -0.51 3.78 16 18 C -0.21 -3.29 6.77 -39.38 -0.27 -3.56 16 19 C -0.06 -0.90 9.69 -39.61 -0.38 -1.29 16 20 C -0.14 -2.08 4.38 -104.58 -0.46 -2.53 16 21 C -0.08 -0.88 4.64 -29.04 -0.13 -1.02 16 22 C 0.51 6.74 7.67 -10.99 -0.08 6.66 16 23 O -0.52 -9.66 15.61 5.56 0.09 -9.57 16 24 N -0.63 -6.21 3.27 -189.51 -0.62 -6.83 16 25 C 0.09 0.76 10.41 59.85 0.62 1.39 16 26 C 0.08 0.44 9.74 59.85 0.58 1.02 16 27 C -0.06 -0.88 9.69 -39.61 -0.38 -1.27 16 28 C -0.19 -3.39 9.22 -39.38 -0.36 -3.75 16 29 H 0.07 0.84 4.80 -51.93 -0.25 0.59 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.20 7.79 -51.93 -0.40 0.79 16 33 H 0.07 1.41 7.66 -51.93 -0.40 1.01 16 34 H 0.05 0.69 8.12 -51.93 -0.42 0.26 16 35 H 0.07 1.20 4.65 -51.93 -0.24 0.96 16 36 H 0.09 1.46 6.16 -51.93 -0.32 1.15 16 37 H 0.09 1.35 7.92 -51.93 -0.41 0.94 16 38 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 39 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.14 1.93 3.40 -52.49 -0.18 1.75 16 41 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 42 H 0.09 0.75 7.81 -51.93 -0.41 0.35 16 43 H 0.09 0.80 7.81 -51.93 -0.41 0.39 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.41 7.92 -51.93 -0.41 0.00 16 46 H 0.08 0.87 7.42 -51.93 -0.39 0.49 16 47 H 0.06 0.28 7.85 -51.93 -0.41 -0.13 16 48 H 0.07 0.27 7.79 -51.93 -0.40 -0.13 16 49 H 0.06 0.26 7.85 -51.93 -0.41 -0.15 16 50 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 51 H 0.12 2.14 6.12 -52.49 -0.32 1.82 16 LS Contribution 408.86 15.07 6.16 6.16 Total: -1.00 -36.46 408.86 -7.99 -44.45 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -7.72 Total: 13.16 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -1.29 Total: 1.07 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.29 Total: -56.05 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: 0.17 Total: -25.44 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.46 -7.99 -44.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799354400.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.184 kcal (2) G-P(sol) polarization free energy of solvation -36.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds